Wall clock time and date at job start Wed Apr 1 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46504 * 119.99881 * 270.00232 * 3 2 1 5 5 C 1.53001 * 109.47293 * 89.99716 * 4 3 2 6 6 N 1.46901 * 109.47040 * 179.97438 * 5 4 3 7 7 C 1.46902 * 110.99930 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.39836 * 325.17693 * 7 6 5 9 9 C 1.53068 * 109.40007 * 205.43314 * 7 6 5 10 10 C 1.53350 * 108.43381 * 190.98929 * 9 7 6 11 11 C 1.52920 * 108.66398 * 67.53221 * 10 9 7 12 12 N 1.45755 * 110.48363 * 309.22722 * 11 10 9 13 13 C 1.46500 * 117.94652 * 199.07885 * 12 11 10 14 14 C 1.33359 * 124.11007 * 19.10214 * 12 11 10 15 15 O 1.21278 * 118.24652 * 177.75325 * 14 12 11 16 16 C 1.34773 * 120.00149 * 89.99434 * 3 2 1 17 17 O 1.21280 * 120.00194 * 180.02562 * 16 3 2 18 18 C 1.50705 * 119.99746 * 0.02562 * 16 3 2 19 19 S 1.80999 * 109.46997 * 179.97438 * 18 16 3 20 20 C 1.76195 * 99.99987 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00198 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00300 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99348 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00430 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46864 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47472 * 119.99918 * 24 22 20 27 27 H 1.48498 * 109.47183 * 240.00518 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.00226 * 1 2 3 30 30 H 1.09000 * 109.47050 * 60.00054 * 1 2 3 31 31 H 1.09000 * 109.47050 * 119.99945 * 2 1 3 32 32 H 1.09001 * 109.46801 * 240.00058 * 2 1 3 33 33 H 1.09003 * 109.46763 * 209.99449 * 4 3 2 34 34 H 1.08995 * 109.47081 * 329.99868 * 4 3 2 35 35 H 1.08995 * 109.47243 * 300.00194 * 5 4 3 36 36 H 1.09009 * 109.46781 * 60.00186 * 5 4 3 37 37 H 1.00901 * 111.00408 * 303.95882 * 6 5 4 38 38 H 1.09005 * 109.67004 * 310.70251 * 9 7 6 39 39 H 1.08995 * 109.67825 * 71.23734 * 9 7 6 40 40 H 1.09000 * 109.61851 * 307.76438 * 10 9 7 41 41 H 1.09004 * 109.72666 * 187.35775 * 10 9 7 42 42 H 1.08999 * 109.29552 * 188.92141 * 11 10 9 43 43 H 1.08991 * 109.30249 * 69.54188 * 11 10 9 44 44 H 1.08996 * 109.47582 * 180.02562 * 13 12 11 45 45 H 1.09004 * 109.46905 * 300.02483 * 13 12 11 46 46 H 1.08997 * 109.47120 * 60.02134 * 13 12 11 47 47 H 1.09002 * 109.47098 * 299.98994 * 18 16 3 48 48 H 1.08999 * 109.47069 * 59.99832 * 18 16 3 49 49 H 0.97006 * 119.99405 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 0.9874 2.7930 -1.7105 6 7 1.2324 3.4860 -2.9824 7 6 0.0273 4.1918 -3.4380 8 1 -0.8558 3.6157 -3.1618 9 6 0.0746 4.3483 -4.9599 10 6 -1.0369 5.3166 -5.3826 11 6 -0.6973 6.7114 -4.8559 12 7 -0.3821 6.6569 -3.4339 13 6 -0.4501 7.9035 -2.6673 14 6 -0.0352 5.5436 -2.7869 15 8 0.2452 5.6273 -1.6099 16 6 2.2429 2.0166 1.1672 17 8 2.6467 3.1602 1.1672 18 6 1.9921 1.3060 2.4723 19 16 2.3846 2.4148 3.8480 20 6 2.0110 1.3589 5.2081 21 1 1.6560 0.3545 5.0305 22 6 2.1740 1.8175 6.5081 23 7 2.6081 3.0412 6.7246 24 14 1.7786 0.6979 7.9500 25 1 1.3123 -0.6174 7.4421 26 1 2.9973 0.5060 8.7766 27 1 0.7111 1.3149 8.7777 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.0643 2.7986 -1.1384 34 1 2.5505 1.3452 -2.0284 35 1 0.1856 2.0664 -1.8408 36 1 0.6993 3.5198 -0.9508 37 1 2.0142 4.1191 -2.9045 38 1 1.0433 4.7498 -5.2575 39 1 -0.0828 3.3794 -5.4336 40 1 -1.9876 4.9883 -4.9623 41 1 -1.1077 5.3434 -6.4700 42 1 -1.5501 7.3724 -5.0108 43 1 0.1617 7.1029 -5.4006 44 1 -0.1897 7.7054 -1.6276 45 1 0.2503 8.6262 -3.0859 46 1 -1.4616 8.3065 -2.7180 47 1 0.9442 1.0116 2.5302 48 1 2.6227 0.4188 2.5299 49 1 2.7217 3.3618 7.6331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715720607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:12 Heat of formation + Delta-G solvation = -64.819007 kcal Electronic energy + Delta-G solvation = -28211.332658 eV Core-core repulsion = 24299.742023 eV Total energy + Delta-G solvation = -3911.590635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94529 -39.50444 -36.80949 -36.67031 -35.56752 -33.28109 -32.37881 -31.12692 -29.83393 -28.97506 -27.38281 -26.71719 -25.41661 -23.62605 -23.21052 -22.66078 -22.13744 -19.29114 -18.87653 -17.66568 -17.35553 -16.79419 -16.64323 -16.24775 -15.81623 -15.60056 -14.82761 -14.76035 -14.66605 -14.63944 -14.00133 -13.88645 -13.75567 -13.53152 -13.43264 -13.18851 -12.97111 -12.92542 -12.53023 -12.43797 -12.28772 -12.07439 -11.87164 -11.75903 -11.65202 -11.48706 -11.28679 -11.22951 -11.03699 -10.95837 -10.77402 -10.68566 -10.21016 -9.74142 -9.25035 -9.02841 -9.02617 -8.63540 -8.44561 -8.14294 -6.43537 -6.16701 -3.86451 2.35557 2.70193 2.97668 3.17526 3.24564 3.29091 3.34088 3.62850 3.96095 4.16675 4.25026 4.27492 4.40471 4.52340 4.82495 4.89176 4.95778 4.99692 5.08753 5.11506 5.13684 5.17990 5.19635 5.23013 5.31104 5.33651 5.38489 5.41573 5.54904 5.58786 5.63133 5.68676 5.73002 5.75181 5.84816 6.00905 6.04189 6.05985 6.12805 6.16501 6.30133 6.58569 6.81710 7.01951 7.15340 7.63957 7.66136 7.92277 8.40330 8.68553 9.28424 10.90793 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.002341 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.343181 B =11958.025498 C =13072.070304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 N -0.619 5.619 4 C 0.124 3.876 5 C 0.032 3.968 6 N -0.659 5.659 7 C 0.080 3.920 8 H 0.107 0.893 9 C -0.109 4.109 10 C -0.137 4.137 11 C 0.113 3.887 12 N -0.608 5.608 13 C 0.067 3.933 14 C 0.479 3.521 15 O -0.534 6.534 16 C 0.532 3.468 17 O -0.510 6.510 18 C -0.149 4.149 19 S -0.063 6.063 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.072 3.928 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.346 0.654 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 0.816 -29.138 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.016 4.016 3 N -0.355 5.355 4 C 0.000 4.000 5 C -0.098 4.098 6 N -0.289 5.289 7 C -0.034 4.034 8 H 0.125 0.875 9 C -0.147 4.147 10 C -0.175 4.175 11 C -0.010 4.010 12 N -0.342 5.342 13 C -0.076 4.076 14 C 0.266 3.734 15 O -0.410 6.410 16 C 0.320 3.680 17 O -0.384 6.384 18 C -0.299 4.299 19 S 0.164 5.836 20 C -0.681 4.681 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.164 0.836 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.518 2.095 -28.749 29.790 hybrid contribution -0.939 -1.176 1.454 2.092 sum -8.456 0.919 -27.295 28.590 Atomic orbital electron populations 1.22303 0.96189 1.02079 1.02708 1.21541 0.94383 0.82480 1.03151 1.47934 1.67956 1.14153 1.05490 1.21211 0.97061 0.96976 0.84739 1.22632 0.98694 0.98082 0.90354 1.60832 1.05004 1.31759 1.31323 1.21601 0.96305 0.89876 0.95637 0.87537 1.21642 0.99231 1.00524 0.93339 1.21906 0.99556 0.94069 1.01993 1.21400 1.00928 0.98271 0.80383 1.47333 1.68199 1.08883 1.09827 1.21790 1.01251 0.85296 0.99291 1.21507 0.77044 0.87148 0.87750 1.90820 1.47944 1.86172 1.16015 1.20347 0.76541 0.86521 0.84627 1.90715 1.43620 1.17312 1.86743 1.23571 1.04663 1.04409 0.97299 1.85442 1.86751 1.18048 0.93376 1.22901 1.51486 1.01468 0.92234 0.90938 1.25001 0.94762 0.95546 0.98379 1.70044 1.43106 1.15676 1.21468 0.86121 0.78138 0.80088 0.81170 1.19627 1.20589 1.20609 0.91676 0.91974 0.92422 0.89984 0.90585 0.90145 0.90335 0.91034 0.91848 0.83604 0.90795 0.89833 0.90900 0.89332 0.90698 0.91640 0.88801 0.92267 0.92290 0.89327 0.89371 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.24 37.16 0.38 -1.49 16 2 C 0.11 1.24 5.98 -4.04 -0.02 1.21 16 3 N -0.62 -9.37 2.47 -173.68 -0.43 -9.80 16 4 C 0.12 1.65 5.71 -4.04 -0.02 1.63 16 5 C 0.03 0.42 5.69 -3.82 -0.02 0.40 16 6 N -0.66 -7.06 6.15 -108.18 -0.67 -7.72 16 7 C 0.08 0.75 2.73 -69.08 -0.19 0.56 16 8 H 0.11 1.00 7.79 -51.93 -0.40 0.59 16 9 C -0.11 -0.65 5.64 -26.52 -0.15 -0.80 16 10 C -0.14 -0.59 6.02 -26.59 -0.16 -0.75 16 11 C 0.11 0.61 6.40 -4.48 -0.03 0.58 16 12 N -0.61 -5.67 3.21 -182.86 -0.59 -6.25 16 13 C 0.07 0.60 10.47 59.85 0.63 1.23 16 14 C 0.48 5.83 6.93 -11.87 -0.08 5.75 16 15 O -0.53 -9.22 13.87 5.56 0.08 -9.14 16 16 C 0.53 10.85 7.69 -10.98 -0.08 10.76 16 17 O -0.51 -12.56 15.44 5.56 0.09 -12.47 16 18 C -0.15 -3.20 4.71 36.01 0.17 -3.03 16 19 S -0.06 -1.78 20.57 -107.50 -2.21 -4.00 16 20 C -0.53 -15.58 9.50 30.94 0.29 -15.29 16 21 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.84 13.22 55.49 0.73 -26.11 16 24 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.80 7.22 -51.93 -0.38 0.43 16 30 H 0.06 0.59 6.26 -51.93 -0.33 0.26 16 31 H 0.08 0.96 6.44 -51.93 -0.33 0.63 16 32 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 33 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.08 0.84 7.89 -51.93 -0.41 0.43 16 35 H 0.07 0.85 6.17 -51.93 -0.32 0.53 16 36 H 0.06 1.12 6.47 -51.92 -0.34 0.78 16 37 H 0.35 4.00 8.46 -39.29 -0.33 3.66 16 38 H 0.07 0.46 8.13 -51.93 -0.42 0.03 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.30 8.10 -51.93 -0.42 -0.13 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 1.14 6.59 -51.93 -0.34 0.80 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 1.78 7.19 -51.92 -0.37 1.41 16 48 H 0.09 1.74 7.40 -51.92 -0.38 1.36 16 49 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -37.98 401.55 -9.44 -47.42 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.08 Total: 2.39 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 0.61 Total: 2.78 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.95 Total: -49.89 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.16 Total: -21.62 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -4.00 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.98 -9.44 -47.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715720607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.403 kcal (2) G-P(sol) polarization free energy of solvation -37.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds