Wall clock time and date at job start Wed Apr 1 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 120.00347 * 2 1 4 4 H 1.07998 * 120.00144 * 203.29793 * 3 2 1 5 5 C 1.38812 * 119.99715 * 23.29595 * 3 2 1 6 6 N 1.31621 * 119.99878 * 13.96133 * 5 3 2 7 7 Si 1.86797 * 119.99952 * 193.96445 * 5 3 2 8 8 H 1.48501 * 109.47159 * 90.00279 * 7 5 3 9 9 H 1.48503 * 109.47185 * 209.99883 * 7 5 3 10 10 H 1.48494 * 109.47400 * 329.99912 * 7 5 3 11 11 C 1.46501 * 120.00027 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.89072 * 182.42913 * 11 2 1 13 13 C 1.55158 * 111.00242 * 58.54849 * 11 2 1 14 14 C 1.54329 * 102.93980 * 206.38459 * 13 11 2 15 15 N 1.47017 * 107.27240 * 22.19282 * 14 13 11 16 16 C 1.34781 * 125.64857 * 181.01873 * 15 14 13 17 17 O 1.21274 * 119.99924 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99824 * 0.02799 * 16 15 14 19 19 N 1.46499 * 109.46770 * 179.97438 * 18 16 15 20 20 C 1.39531 * 123.87982 * 90.00180 * 19 18 16 21 21 C 1.39372 * 130.82347 * 359.97438 * 20 19 18 22 22 C 1.37933 * 120.13299 * 180.02562 * 21 20 19 23 23 C 1.38302 * 120.37262 * 0.25009 * 22 21 20 24 24 C 1.38389 * 119.82650 * 359.47559 * 23 22 21 25 25 C 1.37671 * 119.91677 * 0.54217 * 24 23 22 26 26 C 1.51139 * 132.85647 * 179.73139 * 25 24 23 27 27 C 1.34367 * 123.87582 * 269.99751 * 19 18 16 28 28 O 1.21291 * 126.44660 * 0.02562 * 27 19 18 29 29 C 1.47419 * 108.70472 * 1.28822 * 15 14 13 30 30 H 1.09001 * 109.47298 * 275.16782 * 1 2 3 31 31 H 1.08994 * 109.46942 * 35.17289 * 1 2 3 32 32 H 1.09003 * 109.46705 * 155.16950 * 1 2 3 33 33 H 0.97006 * 119.99786 * 180.02562 * 6 5 3 34 34 H 1.09003 * 110.71747 * 88.02631 * 13 11 2 35 35 H 1.08996 * 110.87343 * 324.82088 * 13 11 2 36 36 H 1.08995 * 109.88357 * 262.77410 * 14 13 11 37 37 H 1.09000 * 110.00585 * 141.68416 * 14 13 11 38 38 H 1.08996 * 109.47409 * 60.00121 * 18 16 15 39 39 H 1.09004 * 109.47134 * 299.99557 * 18 16 15 40 40 H 1.08000 * 119.92950 * 0.02562 * 21 20 19 41 41 H 1.07997 * 119.81163 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.08109 * 179.72145 * 23 22 21 43 43 H 1.08005 * 120.04202 * 180.24992 * 24 23 22 44 44 H 1.09005 * 110.50994 * 61.33450 * 26 25 24 45 45 H 1.08999 * 110.62595 * 298.68314 * 26 25 24 46 46 H 1.09001 * 110.36839 * 94.47990 * 29 15 14 47 47 H 1.09000 * 110.37061 * 216.80674 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1637 1.2240 -0.3699 5 6 1.5406 2.3390 0.4754 6 7 0.4270 2.2557 1.1722 7 14 2.3012 4.0090 0.1264 8 1 1.7567 4.5445 -1.1472 9 1 1.9763 4.9424 1.2348 10 1 3.7751 3.8680 0.0141 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0966 0.0437 13 6 1.8210 -2.1288 -1.2347 14 6 2.0905 -3.5685 -0.7486 15 7 2.0434 -3.5491 0.7207 16 6 2.2485 -4.6093 1.5273 17 8 2.1843 -4.4767 2.7310 18 6 2.5577 -5.9593 0.9332 19 7 2.7376 -6.9367 2.0095 20 6 1.7013 -7.7004 2.5479 21 6 0.3426 -7.7387 2.2397 22 6 -0.4986 -8.5918 2.9231 23 6 -0.0035 -9.4110 3.9214 24 6 1.3454 -9.3827 4.2291 25 6 2.1872 -8.5319 3.5489 26 6 3.6711 -8.2607 3.6437 27 6 3.9195 -7.2008 2.5916 28 8 4.9851 -6.6868 2.3243 29 6 1.7283 -2.1794 1.1656 30 1 -0.3634 0.0926 1.0235 31 1 -0.3633 0.8400 -0.5920 32 1 -0.3633 -0.9327 -0.4316 33 1 0.0011 3.0616 1.5041 34 1 2.4582 -1.8830 -2.0843 35 1 0.7699 -1.9991 -1.4924 36 1 3.0751 -3.8947 -1.0836 37 1 1.3256 -4.2420 -1.1352 38 1 3.4724 -5.8960 0.3438 39 1 1.7332 -6.2717 0.2923 40 1 -0.0522 -7.0991 1.4642 41 1 -1.5506 -8.6169 2.6804 42 1 -0.6672 -10.0740 4.4565 43 1 1.7365 -10.0239 5.0053 44 1 4.2394 -9.1633 3.4189 45 1 3.9301 -7.8840 4.6332 46 1 0.6559 -2.0703 1.3271 47 1 2.2763 -1.9410 2.0771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972425293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:28 Heat of formation + Delta-G solvation = 10.952899 kcal Electronic energy + Delta-G solvation = -29809.781063 eV Core-core repulsion = 25766.032194 eV Total energy + Delta-G solvation = -4043.748870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.83032 -39.72767 -38.60475 -37.49780 -35.96566 -34.85799 -33.34512 -31.77026 -30.67591 -29.83425 -28.67575 -28.17338 -26.95899 -26.08266 -23.64314 -22.72593 -22.39559 -21.98855 -20.77493 -19.37978 -19.17032 -17.55308 -17.34267 -17.06283 -17.04064 -16.10017 -16.01448 -15.93544 -15.13421 -14.90120 -14.53909 -14.38190 -14.15278 -13.95621 -13.46359 -13.35680 -13.33324 -13.30638 -12.88774 -12.75775 -12.54648 -12.42064 -12.18412 -12.12847 -11.96447 -11.54605 -11.24843 -11.00636 -10.93501 -10.84090 -10.54532 -10.52071 -10.32994 -10.29903 -9.93872 -9.88269 -9.71775 -9.15668 -8.63577 -8.40712 -8.17728 -6.84675 -5.79828 -3.28059 0.92863 1.04278 2.14076 2.42230 2.65470 3.17199 3.35526 3.42075 3.43480 3.52938 3.87073 4.09243 4.42156 4.47376 4.51979 4.62900 4.74025 4.88465 4.91944 4.95396 5.05023 5.11650 5.17461 5.20360 5.26463 5.42331 5.43436 5.54838 5.57448 5.71976 5.76806 5.84284 5.95146 6.05924 6.20331 6.25401 6.26651 6.31735 6.44454 6.47692 6.57320 6.71662 6.82160 6.82672 7.27341 7.62476 7.65279 7.71099 7.74921 8.22718 8.31968 9.14726 9.76860 10.25568 11.24474 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.002347 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.515326 B =11927.495344 C =12343.871426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.100 3.900 15 N -0.611 5.611 16 C 0.507 3.493 17 O -0.532 6.532 18 C 0.094 3.906 19 N -0.534 5.534 20 C 0.156 3.844 21 C -0.136 4.136 22 C -0.083 4.083 23 C -0.144 4.144 24 C -0.067 4.067 25 C -0.143 4.143 26 C -0.110 4.110 27 C 0.532 3.468 28 O -0.498 6.498 29 C 0.088 3.912 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.002 0.998 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.069 0.931 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -26.080 -0.482 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.024 4.024 15 N -0.346 5.346 16 C 0.293 3.707 17 O -0.408 6.408 18 C -0.031 4.031 19 N -0.255 5.255 20 C 0.061 3.939 21 C -0.156 4.156 22 C -0.102 4.102 23 C -0.163 4.163 24 C -0.085 4.085 25 C -0.145 4.145 26 C -0.149 4.149 27 C 0.321 3.679 28 O -0.372 6.372 29 C -0.036 4.036 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.087 0.913 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.183 -25.491 0.054 25.492 hybrid contribution 0.128 1.155 -0.232 1.185 sum -0.056 -24.337 -0.177 24.337 Atomic orbital electron populations 1.20819 0.82463 0.95616 0.99709 1.43867 1.01874 0.99859 1.84783 1.19222 0.98859 0.85155 1.35975 0.91153 1.25075 0.97978 0.98745 0.97581 1.70074 1.20122 1.27495 1.36979 0.86207 0.78783 0.83826 0.77420 1.21392 1.21698 1.20392 1.21513 0.96475 0.85740 0.90047 0.90292 1.23209 1.02935 0.92541 1.00605 1.22108 1.00805 0.99556 0.79912 1.48530 1.69015 1.09772 1.07274 1.20443 0.77938 0.85334 0.87004 1.90733 1.51328 1.84549 1.14206 1.21469 1.05511 0.86787 0.89369 1.45422 1.08104 1.36567 1.35424 1.18137 0.89428 0.92008 0.94374 1.20379 0.90033 1.02120 1.03117 1.20880 0.99464 0.94745 0.95118 1.21046 0.94991 1.01067 0.99189 1.20245 0.92708 0.97144 0.98404 1.19777 0.95221 1.00367 0.99176 1.21027 0.93855 0.99410 1.00604 1.20645 0.82578 0.82747 0.81907 1.90798 1.26176 1.54766 1.65418 1.23174 1.01007 0.78894 1.00503 0.94861 0.93886 0.97916 0.93573 0.90439 0.90407 0.91657 0.91947 0.86309 0.86888 0.85895 0.85214 0.85369 0.85372 0.85959 0.85801 0.91294 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 7.60 59.85 0.45 4.19 16 2 N -0.58 -14.06 2.96 -170.89 -0.51 -14.57 16 3 C -0.26 -7.04 9.60 -15.06 -0.14 -7.18 16 4 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 5 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 6 N -0.90 -25.99 10.78 55.49 0.60 -25.39 16 7 Si 0.91 21.60 29.58 -169.99 -5.03 16.58 16 8 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.40 3.55 -65.66 -0.23 3.17 16 12 H 0.08 1.60 7.95 -51.93 -0.41 1.18 16 13 C -0.15 -2.30 6.48 -24.89 -0.16 -2.46 16 14 C 0.10 1.23 6.48 -3.06 -0.02 1.21 16 15 N -0.61 -9.75 3.32 -170.38 -0.57 -10.32 16 16 C 0.51 8.30 7.92 -10.98 -0.09 8.22 16 17 O -0.53 -11.04 16.68 5.56 0.09 -10.94 16 18 C 0.09 1.12 5.41 -5.19 -0.03 1.10 16 19 N -0.53 -6.83 2.22 -114.53 -0.25 -7.08 16 20 C 0.16 1.79 6.69 -83.69 -0.56 1.23 16 21 C -0.14 -1.35 9.74 -39.27 -0.38 -1.73 16 22 C -0.08 -0.67 10.01 -39.67 -0.40 -1.07 16 23 C -0.14 -1.05 10.07 -39.50 -0.40 -1.45 16 24 C -0.07 -0.52 10.03 -39.73 -0.40 -0.92 16 25 C -0.14 -1.40 6.35 -104.37 -0.66 -2.06 16 26 C -0.11 -1.03 6.88 -28.48 -0.20 -1.23 16 27 C 0.53 7.21 8.23 -10.83 -0.09 7.12 16 28 O -0.50 -8.37 17.67 5.55 0.10 -8.27 16 29 C 0.09 1.72 6.47 -2.41 -0.02 1.70 16 30 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 31 H 0.04 1.09 7.39 -51.93 -0.38 0.70 16 32 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.21 6.38 -51.93 -0.33 0.88 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 1.29 7.95 -51.93 -0.41 0.88 16 39 H 0.11 0.97 7.62 -51.93 -0.40 0.57 16 40 H 0.12 1.11 7.70 -52.49 -0.40 0.70 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 43 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 44 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.07 1.42 7.06 -51.93 -0.37 1.05 16 47 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -35.03 385.94 -9.92 -44.95 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.76 Total: -0.65 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -3.41 Total: 9.89 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.73 Total: -57.36 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.19 Total: -19.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.03 -9.92 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972425293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.902 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds