Wall clock time and date at job start Wed Apr 1 2020 02:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 119.99620 * 2 1 4 4 O 1.21287 * 119.99913 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00234 * 359.97438 * 3 2 1 6 6 N 1.46502 * 109.47397 * 180.02562 * 5 3 2 7 7 C 1.46736 * 125.62367 * 269.72357 * 6 5 3 8 8 C 1.50824 * 106.24937 * 179.84814 * 7 6 5 9 9 C 1.37581 * 133.23962 * 180.13901 * 8 7 6 10 10 C 1.38467 * 119.95706 * 180.29294 * 9 8 7 11 11 C 1.38380 * 120.19023 * 0.02562 * 10 9 8 12 12 C 1.37941 * 120.32051 * 359.97147 * 11 10 9 13 13 C 1.39623 * 119.82519 * 0.02562 * 12 11 10 14 14 C 1.34424 * 125.62556 * 90.02244 * 6 5 3 15 15 O 1.21547 * 124.85090 * 0.02988 * 14 6 5 16 16 C 1.46494 * 120.00464 * 179.97438 * 2 1 3 17 17 C 1.53777 * 113.61559 * 60.00266 * 16 2 1 18 18 C 1.53785 * 87.08470 * 220.02288 * 17 16 2 19 19 N 1.46494 * 113.61317 * 139.98223 * 18 17 16 20 20 C 1.36945 * 119.99612 * 155.00188 * 19 18 17 21 21 H 1.07999 * 120.00077 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99637 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00227 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99854 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47057 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47102 * 119.99824 * 24 22 20 27 27 H 1.48500 * 109.47389 * 240.00173 * 24 22 20 28 28 C 1.53775 * 87.07923 * 25.42792 * 18 17 16 29 29 H 1.08997 * 109.47385 * 269.99955 * 1 2 3 30 30 H 1.08999 * 109.47440 * 30.00871 * 1 2 3 31 31 H 1.09005 * 109.46969 * 150.00203 * 1 2 3 32 32 H 1.08997 * 109.47192 * 300.00349 * 5 3 2 33 33 H 1.09000 * 109.47009 * 60.00759 * 5 3 2 34 34 H 1.08998 * 110.09951 * 299.19631 * 7 6 5 35 35 H 1.09001 * 110.09771 * 60.79926 * 7 6 5 36 36 H 1.08002 * 120.02140 * 0.31136 * 9 8 7 37 37 H 1.08001 * 119.90567 * 180.02562 * 10 9 8 38 38 H 1.08005 * 119.84047 * 179.97438 * 11 10 9 39 39 H 1.07997 * 120.08567 * 180.02562 * 12 11 10 40 40 H 1.08999 * 112.91113 * 191.25568 * 16 2 1 41 41 H 1.08998 * 113.61780 * 105.46965 * 17 16 2 42 42 H 1.09009 * 113.61210 * 334.56781 * 17 16 2 43 43 H 1.08999 * 113.60657 * 270.79722 * 18 17 16 44 44 H 0.96995 * 120.00290 * 335.27079 * 19 18 17 45 45 H 0.97005 * 120.00046 * 179.97438 * 23 22 20 46 46 H 1.09002 * 113.61195 * 89.11597 * 28 18 17 47 47 H 1.08997 * 113.61743 * 220.01629 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 7 2.3372 3.5859 -0.0011 7 6 2.8882 4.2399 1.1914 8 6 3.8174 5.3171 0.6906 9 6 4.6120 6.2453 1.3230 10 6 5.3698 7.1309 0.5755 11 6 5.3302 7.0858 -0.8070 12 6 4.5370 6.1591 -1.4511 13 6 3.7700 5.2627 -0.7042 14 6 2.8456 4.1809 -1.0940 15 8 2.5810 3.8722 -2.2394 16 6 2.1975 -1.2686 0.0006 17 6 1.8956 -2.1549 -1.2193 18 6 1.9130 -3.3526 -0.2548 19 7 0.8719 -4.3450 -0.5327 20 6 1.0458 -5.6467 -0.1446 21 1 1.9507 -5.9418 0.3658 22 6 0.0590 -6.5870 -0.4074 23 7 -1.0435 -6.2275 -1.0299 24 14 0.2965 -8.3628 0.1212 25 1 1.6111 -8.5066 0.7966 26 1 -0.7870 -8.7487 1.0606 27 1 0.2538 -9.2447 -1.0728 28 6 1.5375 -2.3608 0.8587 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 0.7589 2.5298 -0.8908 33 1 0.7584 2.5303 0.8892 34 1 2.0848 4.6799 1.7822 35 1 3.4432 3.5187 1.7913 36 1 4.6449 6.2830 2.4019 37 1 5.9935 7.8589 1.0728 38 1 5.9232 7.7795 -1.3846 39 1 4.5092 6.1270 -2.5303 40 1 3.2625 -1.1436 0.1965 41 1 2.6999 -2.1746 -1.9546 42 1 0.9184 -1.9670 -1.6643 43 1 2.9000 -3.7981 -0.1300 44 1 0.0611 -4.0809 -0.9949 45 1 -1.7330 -6.8846 -1.2139 46 1 0.4625 -2.2291 0.9818 47 1 2.0527 -2.5467 1.8010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999714607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:05 Heat of formation + Delta-G solvation = 22.649522 kcal Electronic energy + Delta-G solvation = -28984.965886 eV Core-core repulsion = 24941.724220 eV Total energy + Delta-G solvation = -4043.241666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50649 -40.09211 -38.51719 -37.86882 -36.25119 -34.84114 -33.21767 -32.29048 -31.48860 -30.04733 -28.30655 -27.03466 -27.02384 -25.15765 -24.59205 -23.57166 -22.21861 -22.04900 -20.42680 -19.38988 -18.81656 -17.52075 -17.35528 -17.14198 -17.00499 -16.51438 -16.05014 -15.60546 -15.56681 -14.85718 -14.66816 -14.52846 -14.39844 -13.95008 -13.67618 -13.59683 -13.52536 -13.28419 -13.04170 -12.87495 -12.74480 -12.47495 -12.27562 -12.20191 -11.96620 -11.80329 -11.48118 -11.26934 -10.92957 -10.61150 -10.50163 -10.28285 -10.18812 -10.12274 -9.96519 -9.64487 -9.44954 -9.29210 -8.94681 -8.89707 -8.48571 -7.01136 -5.82511 -3.11397 0.41699 0.87562 2.25750 2.52959 2.55466 3.10463 3.40465 3.46638 3.47472 3.48638 3.70427 4.05191 4.37761 4.45650 4.56173 4.56318 4.70042 4.81893 4.86570 4.96161 5.04641 5.05255 5.07357 5.11484 5.17690 5.29986 5.36220 5.41987 5.50059 5.51488 5.67879 5.73645 5.83725 5.86580 5.93758 5.96756 6.11476 6.15385 6.26767 6.32866 6.39051 6.41802 6.53746 6.65154 6.76976 7.00541 7.44705 7.67270 7.85961 8.14027 8.35907 9.47448 10.03955 10.38690 11.39869 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.033284 B = 0.001815 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.038829 B =15424.203749 C =15531.346476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.492 3.508 4 O -0.534 6.534 5 C 0.119 3.881 6 N -0.599 5.599 7 C 0.143 3.857 8 C -0.078 4.078 9 C -0.104 4.104 10 C -0.089 4.089 11 C -0.129 4.129 12 C -0.046 4.046 13 C -0.152 4.152 14 C 0.565 3.435 15 O -0.521 6.521 16 C 0.117 3.883 17 C -0.163 4.163 18 C 0.169 3.831 19 N -0.710 5.710 20 C -0.244 4.244 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.173 4.173 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.083 0.917 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 29.950 6.598 31.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.329 5.329 3 C 0.278 3.722 4 O -0.411 6.411 5 C -0.006 4.006 6 N -0.331 5.331 7 C 0.020 3.980 8 C -0.080 4.080 9 C -0.122 4.122 10 C -0.107 4.107 11 C -0.147 4.147 12 C -0.065 4.065 13 C -0.155 4.155 14 C 0.354 3.646 15 O -0.397 6.397 16 C 0.013 3.987 17 C -0.203 4.203 18 C 0.057 3.943 19 N -0.347 5.347 20 C -0.375 4.375 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.215 4.215 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.631 29.470 6.040 31.036 hybrid contribution -0.330 -1.006 0.183 1.074 sum 7.301 28.464 6.223 30.037 Atomic orbital electron populations 1.21862 0.79418 1.03776 1.02180 1.47886 1.07002 1.05797 1.72175 1.21066 0.88598 0.85705 0.76839 1.90700 1.13758 1.87150 1.49495 1.21266 0.90379 0.83066 1.05874 1.47341 1.45570 1.32948 1.07280 1.20495 0.96153 0.93261 0.88044 1.20451 0.96966 0.96081 0.94455 1.20305 0.96636 0.94938 1.00331 1.21330 0.97550 0.97823 0.94036 1.21144 0.99591 0.99131 0.94793 1.20895 0.92939 0.92207 1.00450 1.20373 1.01215 0.99027 0.94905 1.18233 0.80107 0.81795 0.84499 1.90791 1.61814 1.67233 1.19864 1.22612 0.97188 0.80166 0.98696 1.23930 1.01905 0.97210 0.97274 1.21337 0.93731 0.87307 0.91962 1.42359 1.18606 1.05283 1.68493 1.19365 1.02041 0.85238 1.30857 0.90937 1.24766 0.96660 0.98305 1.01148 1.69666 1.08251 1.33588 1.46524 0.86108 0.77275 0.85011 0.77734 1.20497 1.21852 1.21827 1.24312 1.01021 0.96564 0.99572 0.92112 0.91347 0.89681 0.86555 0.86831 0.88437 0.88291 0.85035 0.84951 0.84957 0.84978 0.86971 0.91768 0.90026 0.90295 0.78108 0.93495 0.89818 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 8.84 59.84 0.53 1.25 16 2 N -0.60 -7.95 3.08 -173.01 -0.53 -8.49 16 3 C 0.49 6.86 7.74 -10.99 -0.09 6.78 16 4 O -0.53 -9.58 15.91 5.55 0.09 -9.49 16 5 C 0.12 1.19 5.09 -5.19 -0.03 1.17 16 6 N -0.60 -6.74 2.45 -177.52 -0.44 -7.18 16 7 C 0.14 1.14 7.38 -5.00 -0.04 1.11 16 8 C -0.08 -0.68 6.38 -104.27 -0.66 -1.34 16 9 C -0.10 -0.66 10.03 -39.74 -0.40 -1.06 16 10 C -0.09 -0.51 10.05 -39.44 -0.40 -0.91 16 11 C -0.13 -0.85 10.02 -39.64 -0.40 -1.25 16 12 C -0.05 -0.43 10.10 -39.17 -0.40 -0.82 16 13 C -0.15 -1.71 6.26 -105.05 -0.66 -2.37 16 14 C 0.56 7.89 7.97 -12.63 -0.10 7.79 16 15 O -0.52 -9.15 17.71 5.32 0.09 -9.05 16 16 C 0.12 1.81 4.20 -67.12 -0.28 1.53 16 17 C -0.16 -2.78 7.37 -25.92 -0.19 -2.97 16 18 C 0.17 3.31 4.48 -67.12 -0.30 3.01 16 19 N -0.71 -17.36 5.40 -52.64 -0.28 -17.65 16 20 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 24 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 C -0.17 -2.88 7.30 -25.92 -0.19 -3.06 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 31 H 0.08 0.99 6.34 -51.93 -0.33 0.66 16 32 H 0.12 1.12 7.26 -51.93 -0.38 0.74 16 33 H 0.11 0.69 8.11 -51.93 -0.42 0.27 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.11 1.86 7.24 -51.93 -0.38 1.49 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.39 6.89 -51.92 -0.36 1.03 16 43 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 44 H 0.38 9.92 7.92 -40.82 -0.32 9.59 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.08 1.41 6.72 -51.93 -0.35 1.06 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -36.64 391.29 -9.95 -46.59 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.64 Total: 7.59 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -3.84 Total: 1.58 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.53 Total: -60.24 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.18 Total: -18.54 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.64 -9.95 -46.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999714607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.240 kcal (2) G-P(sol) polarization free energy of solvation -36.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds