Wall clock time and date at job start Wed Apr 1 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99957 * 2 1 4 4 C 1.53000 * 109.47473 * 264.42640 * 3 2 1 5 5 H 1.08998 * 112.96886 * 292.75987 * 4 3 2 6 6 C 1.53949 * 113.76524 * 64.43506 * 4 3 2 7 7 C 1.53943 * 86.28817 * 137.90472 * 6 4 3 8 8 N 1.47573 * 113.76886 * 161.07342 * 4 3 2 9 9 C 1.36943 * 134.49002 * 41.07428 * 8 4 3 10 10 H 1.07996 * 120.00337 * 4.71848 * 9 8 4 11 11 C 1.38820 * 119.99533 * 184.72052 * 9 8 4 12 12 N 1.31612 * 120.00532 * 5.52324 * 11 9 8 13 13 Si 1.86802 * 119.99484 * 185.52674 * 11 9 8 14 14 H 1.48489 * 109.47402 * 64.99728 * 13 11 9 15 15 H 1.48498 * 109.46777 * 185.00060 * 13 11 9 16 16 H 1.48501 * 109.46872 * 304.99319 * 13 11 9 17 17 C 1.34777 * 119.99804 * 180.02562 * 2 1 3 18 18 O 1.21279 * 119.99928 * 186.41480 * 17 2 1 19 19 C 1.50695 * 120.00200 * 6.41161 * 17 2 1 20 20 H 1.09003 * 109.25509 * 306.49457 * 19 17 2 21 21 C 1.52658 * 109.36589 * 66.16586 * 19 17 2 22 22 N 1.46126 * 110.98376 * 69.65874 * 21 19 17 23 23 C 1.34670 * 121.06548 * 40.11693 * 22 21 19 24 24 O 1.21551 * 120.33216 * 172.12384 * 23 22 21 25 25 C 1.47822 * 119.33552 * 352.10343 * 23 22 21 26 26 C 1.39312 * 120.94488 * 167.28940 * 25 23 22 27 27 C 1.38070 * 119.60474 * 181.23050 * 26 25 23 28 28 C 1.38375 * 120.16881 * 359.45078 * 27 26 25 29 29 C 1.38417 * 120.41921 * 359.96639 * 28 27 26 30 30 C 1.37832 * 119.96275 * 0.03479 * 29 28 27 31 31 H 1.09004 * 109.46515 * 265.05867 * 1 2 3 32 32 H 1.09000 * 109.46741 * 25.05398 * 1 2 3 33 33 H 1.08992 * 109.47144 * 145.05847 * 1 2 3 34 34 H 1.08994 * 109.47339 * 24.43644 * 3 2 1 35 35 H 1.09009 * 109.46815 * 144.43184 * 3 2 1 36 36 H 1.09000 * 113.74147 * 252.25767 * 6 4 3 37 37 H 1.09001 * 113.73897 * 23.45427 * 6 4 3 38 38 H 1.09002 * 113.76588 * 90.69641 * 7 6 4 39 39 H 1.09004 * 113.76930 * 221.97667 * 7 6 4 40 40 H 0.96999 * 120.00123 * 180.02562 * 12 11 9 41 41 H 1.08997 * 109.17746 * 309.27569 * 21 19 17 42 42 H 1.08998 * 109.17638 * 190.04967 * 21 19 17 43 43 H 0.96996 * 119.46581 * 220.09585 * 22 21 19 44 44 H 1.07998 * 120.20230 * 0.98564 * 26 25 23 45 45 H 1.08002 * 119.91074 * 179.73260 * 27 26 25 46 46 H 1.08004 * 119.79118 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.01760 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5739 1.6404 -1.4356 5 1 3.3040 0.9600 -1.8737 6 6 1.3614 1.9174 -2.3430 7 6 2.1704 3.1064 -2.8920 8 7 2.9090 3.0667 -1.6124 9 6 3.6183 3.9834 -0.8830 10 1 4.1397 3.6753 0.0111 11 6 3.6670 5.3087 -1.2931 12 7 2.9452 5.7072 -2.3190 13 14 4.7572 6.5266 -0.3889 14 1 6.1807 6.1423 -0.5648 15 1 4.5405 7.8886 -0.9395 16 1 4.4169 6.5172 1.0566 17 6 2.1389 -1.1672 -0.0005 18 8 3.3460 -1.1706 0.1168 19 6 1.3925 -2.4681 -0.1468 20 1 0.6060 -2.5180 0.6063 21 6 0.7667 -2.5391 -1.5375 22 7 1.7931 -2.6950 -2.5658 23 6 2.8548 -3.5004 -2.3715 24 8 3.6241 -3.7327 -3.2834 25 6 3.0754 -4.0987 -1.0379 26 6 3.9935 -5.1311 -0.8589 27 6 4.1592 -5.6870 0.3941 28 6 3.4256 -5.2134 1.4675 29 6 2.5211 -4.1797 1.2966 30 6 2.3467 -3.6164 0.0508 31 1 -0.3632 -0.0885 1.0239 32 1 -0.3633 0.9310 -0.4352 33 1 -0.3633 -0.8423 -0.5885 34 1 1.5690 2.0512 0.4251 35 1 3.1032 1.1654 0.5978 36 1 1.1764 1.1351 -3.0791 37 1 0.4635 2.2094 -1.7984 38 1 2.7830 2.8581 -3.7587 39 1 1.5798 4.0115 -3.0340 40 1 2.9796 6.6332 -2.6057 41 1 0.2077 -1.6225 -1.7258 42 1 0.0849 -3.3884 -1.5804 43 1 1.7082 -2.2109 -3.4020 44 1 4.5695 -5.4972 -1.6959 45 1 4.8664 -6.4905 0.5375 46 1 3.5597 -5.6530 2.4449 47 1 1.9522 -3.8148 2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:50 Heat of formation + Delta-G solvation = 31.468029 kcal Electronic energy + Delta-G solvation = -30862.898797 eV Core-core repulsion = 26820.039531 eV Total energy + Delta-G solvation = -4042.859267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34352 -39.53475 -38.30851 -37.80994 -36.14452 -35.25998 -32.48779 -32.11617 -31.24266 -30.00320 -28.24077 -27.85347 -26.58539 -24.57512 -24.16677 -23.36342 -22.88401 -21.73720 -20.29115 -19.23049 -18.64391 -17.88286 -17.45211 -16.91316 -16.71270 -16.20382 -15.93961 -15.33084 -15.13648 -14.96335 -14.65375 -14.59864 -14.23416 -13.94472 -13.76833 -13.58694 -13.38710 -13.20960 -12.89320 -12.61218 -12.48395 -12.31141 -12.26917 -12.03279 -11.61974 -11.46969 -11.29002 -11.00291 -10.82110 -10.71038 -10.49726 -10.06987 -9.90872 -9.80023 -9.74382 -9.56946 -9.33459 -9.14243 -8.94740 -8.79010 -8.40165 -6.84991 -5.73999 -3.07713 0.65834 1.10767 2.60637 2.70295 2.99274 3.07797 3.40941 3.45947 3.47008 3.67603 4.02900 4.27988 4.31689 4.45000 4.51488 4.62099 4.73494 4.83366 4.94830 5.05359 5.11783 5.15290 5.24510 5.28213 5.29228 5.45906 5.53833 5.54430 5.63523 5.72563 5.80556 5.93947 6.06131 6.13043 6.15523 6.20577 6.25131 6.37553 6.56311 6.59152 6.69572 6.71561 6.79574 6.99292 7.25215 7.42406 7.49596 7.60503 8.01466 8.06098 8.23816 9.06348 9.73413 10.62492 11.41429 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002976 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.414596 B = 9405.250895 C = 9630.189280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.606 5.606 3 C 0.119 3.881 4 C 0.131 3.869 5 H 0.044 0.956 6 C -0.155 4.155 7 C 0.152 3.848 8 N -0.601 5.601 9 C -0.223 4.223 10 H 0.077 0.923 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.517 3.483 18 O -0.520 6.520 19 C -0.092 4.092 20 H 0.123 0.877 21 C 0.115 3.885 22 N -0.723 5.723 23 C 0.570 3.430 24 O -0.533 6.533 25 C -0.119 4.119 26 C -0.058 4.058 27 C -0.129 4.129 28 C -0.092 4.092 29 C -0.115 4.115 30 C -0.027 4.027 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.021 0.979 39 H 0.080 0.920 40 H 0.253 0.747 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.409 0.591 44 H 0.136 0.864 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 -22.378 6.287 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.339 5.339 3 C -0.004 4.004 4 C 0.023 3.977 5 H 0.062 0.938 6 C -0.193 4.193 7 C 0.027 3.973 8 N -0.327 5.327 9 C -0.350 4.350 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.302 3.698 18 O -0.394 6.394 19 C -0.114 4.114 20 H 0.140 0.860 21 C -0.009 4.009 22 N -0.377 5.377 23 C 0.358 3.642 24 O -0.410 6.410 25 C -0.123 4.123 26 C -0.077 4.077 27 C -0.147 4.147 28 C -0.111 4.111 29 C -0.133 4.133 30 C -0.028 4.028 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.246 0.754 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.818 -22.228 6.119 25.058 hybrid contribution 0.612 1.090 0.232 1.272 sum -9.207 -21.138 6.351 23.915 Atomic orbital electron populations 1.22134 0.79994 1.03950 1.01769 1.47783 1.06714 1.06193 1.73253 1.21822 0.96957 0.82529 0.99120 1.22506 0.93891 0.88477 0.92803 0.93813 1.23736 0.97501 0.99260 0.98849 1.22328 0.91250 0.95565 0.88135 1.45998 1.62240 1.03578 1.20889 1.18964 1.23553 0.87550 1.04964 0.90528 1.24745 1.00292 0.96717 0.98522 1.69809 1.42527 1.16074 1.28203 0.86240 0.80496 0.80418 0.78894 1.21313 1.21597 1.20975 1.20113 0.87911 0.84478 0.77257 1.90763 1.14037 1.86761 1.47875 1.20688 0.98559 0.92314 0.99879 0.85969 1.21531 0.90034 1.04003 0.85369 1.45559 1.24068 1.47927 1.20147 1.18189 0.80314 0.77935 0.87754 1.90803 1.45537 1.60526 1.44153 1.19631 0.99925 0.99628 0.93072 1.21188 0.94866 0.93713 0.97940 1.21166 1.00211 1.00781 0.92497 1.21306 0.94952 0.95813 0.98988 1.20883 0.99492 0.96988 0.95973 1.19348 0.95609 0.94297 0.93536 0.92477 0.89866 0.91056 0.89650 0.90729 0.93646 0.90927 0.96084 0.90141 0.93684 0.87782 0.90116 0.75371 0.84646 0.85267 0.85453 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 9.46 59.85 0.57 1.09 16 2 N -0.61 -7.96 2.76 -181.57 -0.50 -8.46 16 3 C 0.12 2.10 5.30 -4.04 -0.02 2.08 16 4 C 0.13 2.71 4.54 -66.87 -0.30 2.40 16 5 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.16 -2.79 7.29 -25.79 -0.19 -2.98 16 7 C 0.15 3.59 7.72 -2.85 -0.02 3.56 16 8 N -0.60 -15.37 3.58 -169.75 -0.61 -15.98 16 9 C -0.22 -6.28 10.50 -15.05 -0.16 -6.43 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 12 N -0.92 -27.22 11.31 55.49 0.63 -26.60 16 13 Si 0.91 22.43 29.56 -169.99 -5.02 17.40 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 17 C 0.52 7.31 6.77 -10.99 -0.07 7.23 16 18 O -0.52 -10.05 15.68 5.56 0.09 -9.97 16 19 C -0.09 -0.89 1.93 -93.15 -0.18 -1.07 16 20 H 0.12 0.73 7.70 -51.93 -0.40 0.33 16 21 C 0.12 0.91 5.94 -4.42 -0.03 0.88 16 22 N -0.72 -8.26 5.43 -61.72 -0.34 -8.59 16 23 C 0.57 8.45 7.81 -12.39 -0.10 8.35 16 24 O -0.53 -9.68 17.36 5.32 0.09 -9.58 16 25 C -0.12 -1.60 5.80 -105.07 -0.61 -2.21 16 26 C -0.06 -0.70 9.63 -39.24 -0.38 -1.08 16 27 C -0.13 -1.22 10.04 -39.59 -0.40 -1.62 16 28 C -0.09 -0.82 10.04 -39.46 -0.40 -1.21 16 29 C -0.12 -1.11 9.72 -39.66 -0.39 -1.50 16 30 C -0.03 -0.31 4.18 -104.31 -0.44 -0.74 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.73 6.59 -51.93 -0.34 0.38 16 33 H 0.07 0.38 4.28 -51.93 -0.22 0.15 16 34 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 35 H 0.07 1.50 7.51 -51.92 -0.39 1.11 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.20 6.85 -51.93 -0.36 0.84 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 2.07 6.88 -51.93 -0.36 1.71 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 41 H 0.10 0.64 5.30 -51.93 -0.28 0.36 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.41 4.35 8.92 -40.82 -0.36 3.98 16 44 H 0.14 1.58 7.78 -52.49 -0.41 1.17 16 45 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -37.78 380.05 -9.60 -47.37 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.46 Total: 2.18 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -3.20 Total: 6.49 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.82 Total: -59.63 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.18 Total: -19.55 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.78 -9.60 -47.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.841 kcal (2) G-P(sol) polarization free energy of solvation -37.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds