Wall clock time and date at job start Wed Apr 1 2020 02:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99957 * 2 1 4 4 C 1.53000 * 109.47473 * 264.42640 * 3 2 1 5 5 H 1.08998 * 112.96886 * 292.75987 * 4 3 2 6 6 C 1.53949 * 113.76524 * 64.43506 * 4 3 2 7 7 C 1.53943 * 86.28817 * 137.90472 * 6 4 3 8 8 N 1.47573 * 113.76886 * 161.07342 * 4 3 2 9 9 C 1.36943 * 134.49002 * 41.07428 * 8 4 3 10 10 H 1.07996 * 120.00337 * 4.71848 * 9 8 4 11 11 C 1.38820 * 119.99533 * 184.72052 * 9 8 4 12 12 N 1.31612 * 120.00532 * 5.52324 * 11 9 8 13 13 Si 1.86802 * 119.99484 * 185.52674 * 11 9 8 14 14 H 1.48489 * 109.47402 * 64.99728 * 13 11 9 15 15 H 1.48498 * 109.46777 * 185.00060 * 13 11 9 16 16 H 1.48501 * 109.46872 * 304.99319 * 13 11 9 17 17 C 1.34777 * 119.99804 * 180.02562 * 2 1 3 18 18 O 1.21279 * 119.99928 * 186.41480 * 17 2 1 19 19 C 1.50695 * 120.00200 * 6.41161 * 17 2 1 20 20 H 1.09003 * 109.25509 * 306.49457 * 19 17 2 21 21 C 1.52658 * 109.36589 * 66.16586 * 19 17 2 22 22 N 1.46126 * 110.98376 * 69.65874 * 21 19 17 23 23 C 1.34670 * 121.06548 * 40.11693 * 22 21 19 24 24 O 1.21551 * 120.33216 * 172.12384 * 23 22 21 25 25 C 1.47822 * 119.33552 * 352.10343 * 23 22 21 26 26 C 1.39312 * 120.94488 * 167.28940 * 25 23 22 27 27 C 1.38070 * 119.60474 * 181.23050 * 26 25 23 28 28 C 1.38375 * 120.16881 * 359.45078 * 27 26 25 29 29 C 1.38417 * 120.41921 * 359.96639 * 28 27 26 30 30 C 1.37832 * 119.96275 * 0.03479 * 29 28 27 31 31 H 1.09004 * 109.46515 * 265.05867 * 1 2 3 32 32 H 1.09000 * 109.46741 * 25.05398 * 1 2 3 33 33 H 1.08992 * 109.47144 * 145.05847 * 1 2 3 34 34 H 1.08994 * 109.47339 * 24.43644 * 3 2 1 35 35 H 1.09009 * 109.46815 * 144.43184 * 3 2 1 36 36 H 1.09000 * 113.74147 * 252.25767 * 6 4 3 37 37 H 1.09001 * 113.73897 * 23.45427 * 6 4 3 38 38 H 1.09002 * 113.76588 * 90.69641 * 7 6 4 39 39 H 1.09004 * 113.76930 * 221.97667 * 7 6 4 40 40 H 0.96999 * 120.00123 * 180.02562 * 12 11 9 41 41 H 1.08997 * 109.17746 * 309.27569 * 21 19 17 42 42 H 1.08998 * 109.17638 * 190.04967 * 21 19 17 43 43 H 0.96996 * 119.46581 * 220.09585 * 22 21 19 44 44 H 1.07998 * 120.20230 * 0.98564 * 26 25 23 45 45 H 1.08002 * 119.91074 * 179.73260 * 27 26 25 46 46 H 1.08004 * 119.79118 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.01760 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5739 1.6404 -1.4356 5 1 3.3040 0.9600 -1.8737 6 6 1.3614 1.9174 -2.3430 7 6 2.1704 3.1064 -2.8920 8 7 2.9090 3.0667 -1.6124 9 6 3.6183 3.9834 -0.8830 10 1 4.1397 3.6753 0.0111 11 6 3.6670 5.3087 -1.2931 12 7 2.9452 5.7072 -2.3190 13 14 4.7572 6.5266 -0.3889 14 1 6.1807 6.1423 -0.5648 15 1 4.5405 7.8886 -0.9395 16 1 4.4169 6.5172 1.0566 17 6 2.1389 -1.1672 -0.0005 18 8 3.3460 -1.1706 0.1168 19 6 1.3925 -2.4681 -0.1468 20 1 0.6060 -2.5180 0.6063 21 6 0.7667 -2.5391 -1.5375 22 7 1.7931 -2.6950 -2.5658 23 6 2.8548 -3.5004 -2.3715 24 8 3.6241 -3.7327 -3.2834 25 6 3.0754 -4.0987 -1.0379 26 6 3.9935 -5.1311 -0.8589 27 6 4.1592 -5.6870 0.3941 28 6 3.4256 -5.2134 1.4675 29 6 2.5211 -4.1797 1.2966 30 6 2.3467 -3.6164 0.0508 31 1 -0.3632 -0.0885 1.0239 32 1 -0.3633 0.9310 -0.4352 33 1 -0.3633 -0.8423 -0.5885 34 1 1.5690 2.0512 0.4251 35 1 3.1032 1.1654 0.5978 36 1 1.1764 1.1351 -3.0791 37 1 0.4635 2.2094 -1.7984 38 1 2.7830 2.8581 -3.7587 39 1 1.5798 4.0115 -3.0340 40 1 2.9796 6.6332 -2.6057 41 1 0.2077 -1.6225 -1.7258 42 1 0.0849 -3.3884 -1.5804 43 1 1.7082 -2.2109 -3.4020 44 1 4.5695 -5.4972 -1.6959 45 1 4.8664 -6.4905 0.5375 46 1 3.5597 -5.6530 2.4449 47 1 1.9522 -3.8148 2.1390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:49 Heat of formation + Delta-G solvation = 3.950605 kcal Electronic energy + Delta-G solvation = -30864.092042 eV Core-core repulsion = 26820.039531 eV Total energy + Delta-G solvation = -4044.052512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.25346 -40.69949 -39.54604 -39.09741 -37.10833 -36.42934 -34.25568 -33.31926 -32.02898 -30.99451 -29.87066 -29.33902 -27.51436 -25.47592 -25.30626 -24.99064 -24.24374 -22.72412 -21.32337 -20.89378 -19.69335 -18.84189 -18.57287 -18.35440 -17.79566 -17.38155 -17.07375 -16.67111 -16.35483 -16.03791 -15.84852 -15.82175 -15.45371 -15.32570 -14.85816 -14.74694 -14.24269 -14.11396 -14.05758 -13.92196 -13.64820 -13.35055 -13.31137 -13.28853 -12.96465 -12.84812 -12.55979 -12.48032 -12.31145 -12.24323 -12.03551 -11.81194 -11.59235 -11.33551 -11.10558 -10.91844 -10.87536 -10.24374 -9.92351 -9.74972 -9.59831 -8.90809 -7.90847 -5.25658 -0.18296 0.33495 1.41655 1.45506 1.51154 1.57770 1.76469 1.97559 2.20241 2.46560 2.83097 3.26991 3.27287 3.42589 3.49071 3.61533 3.68637 3.87157 3.90419 4.11109 4.18491 4.21760 4.27810 4.32503 4.43394 4.49183 4.51358 4.56574 4.67269 4.70664 4.81626 4.85504 4.92121 4.95357 5.00692 5.06828 5.11261 5.23613 5.30708 5.38096 5.46398 5.47497 5.56040 5.73496 5.77311 5.94371 5.95550 6.07288 6.46369 6.91044 7.06675 7.19161 7.59824 8.55890 9.23770 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002976 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.414596 B = 9405.250895 C = 9630.189280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.600 5.600 3 C 0.137 3.863 4 C 0.132 3.868 5 H 0.013 0.987 6 C -0.114 4.114 7 C 0.140 3.860 8 N -0.628 5.628 9 C -0.235 4.235 10 H 0.072 0.928 11 C -0.061 4.061 12 N -0.947 5.947 13 Si 0.972 3.028 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.270 1.270 17 C 0.511 3.489 18 O -0.583 6.583 19 C -0.083 4.083 20 H 0.174 0.826 21 C 0.108 3.892 22 N -0.719 5.719 23 C 0.557 3.443 24 O -0.589 6.589 25 C -0.150 4.150 26 C -0.083 4.083 27 C -0.129 4.129 28 C -0.089 4.089 29 C -0.118 4.118 30 C -0.038 4.038 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.003 0.997 39 H 0.056 0.944 40 H 0.249 0.751 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.410 0.590 44 H 0.122 0.878 45 H 0.154 0.846 46 H 0.162 0.838 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.216 -23.880 8.803 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.332 5.332 3 C 0.012 3.988 4 C 0.025 3.975 5 H 0.031 0.969 6 C -0.152 4.152 7 C 0.015 3.985 8 N -0.355 5.355 9 C -0.363 4.363 10 H 0.090 0.910 11 C -0.254 4.254 12 N -0.595 5.595 13 Si 0.800 3.200 14 H -0.216 1.216 15 H -0.216 1.216 16 H -0.195 1.195 17 C 0.300 3.700 18 O -0.462 6.462 19 C -0.104 4.104 20 H 0.191 0.809 21 C -0.015 4.015 22 N -0.371 5.371 23 C 0.346 3.654 24 O -0.471 6.471 25 C -0.153 4.153 26 C -0.102 4.102 27 C -0.147 4.147 28 C -0.107 4.107 29 C -0.136 4.136 30 C -0.040 4.040 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.247 0.753 44 H 0.140 0.860 45 H 0.171 0.829 46 H 0.179 0.821 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.120 -23.749 8.665 28.482 hybrid contribution 1.642 1.495 -0.519 2.280 sum -11.479 -22.253 8.146 26.331 Atomic orbital electron populations 1.22552 0.76220 1.05599 1.04398 1.47801 1.08740 1.04167 1.72537 1.21264 0.96356 0.85058 0.96106 1.22537 0.94272 0.85411 0.95310 0.96935 1.23468 0.96475 0.97109 0.98127 1.22346 0.91765 0.97076 0.87303 1.46424 1.62091 1.05422 1.21577 1.19258 1.23472 0.88507 1.05097 0.90973 1.25524 1.01824 0.98396 0.99664 1.69981 1.43872 1.16014 1.29637 0.85256 0.78365 0.77968 0.78417 1.21586 1.21569 1.19533 1.20997 0.87421 0.85963 0.75631 1.90748 1.17118 1.87735 1.50625 1.20824 0.98767 0.88424 1.02399 0.80870 1.21978 0.89282 1.06996 0.83280 1.45670 1.23823 1.46451 1.21113 1.18658 0.80538 0.78132 0.88029 1.90751 1.47686 1.62834 1.45793 1.19760 1.01644 1.00852 0.93085 1.21320 0.95368 0.94581 0.98963 1.21487 1.00525 1.01029 0.91654 1.21772 0.93717 0.95145 1.00044 1.21335 0.99499 0.96662 0.96056 1.19596 0.95915 0.94875 0.93564 0.89797 0.89937 0.87334 0.89312 0.94208 0.90022 0.88343 0.97866 0.92570 0.94203 0.85252 0.86201 0.75272 0.85999 0.82871 0.82079 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 9.46 127.77 1.21 1.79 16 2 N -0.60 -14.11 2.76 -846.76 -2.34 -16.45 16 3 C 0.14 4.78 5.30 86.38 0.46 5.23 16 4 C 0.13 5.47 4.54 45.10 0.20 5.68 16 5 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 6 C -0.11 -3.88 7.29 31.25 0.23 -3.65 16 7 C 0.14 6.72 7.72 86.44 0.67 7.39 16 8 N -0.63 -32.92 3.58 -690.97 -2.47 -35.40 16 9 C -0.23 -13.58 10.50 84.03 0.88 -12.70 16 10 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 11 C -0.06 -3.52 5.50 84.87 0.47 -3.05 16 12 N -0.95 -57.42 11.31 21.65 0.24 -57.17 16 13 Si 0.97 46.89 29.56 68.60 2.03 48.92 16 14 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 17 C 0.51 13.42 6.77 87.66 0.59 14.02 16 18 O -0.58 -22.87 15.68 -3.03 -0.05 -22.91 16 19 C -0.08 -1.26 1.93 -12.43 -0.02 -1.29 16 20 H 0.17 0.87 7.70 -2.39 -0.02 0.85 16 21 C 0.11 1.23 5.94 86.34 0.51 1.75 16 22 N -0.72 -15.59 5.43 -467.53 -2.54 -18.13 16 23 C 0.56 17.07 7.81 86.80 0.68 17.75 16 24 O -0.59 -23.05 17.36 -3.88 -0.07 -23.11 16 25 C -0.15 -4.04 5.80 -20.15 -0.12 -4.16 16 26 C -0.08 -2.08 9.63 22.49 0.22 -1.86 16 27 C -0.13 -2.30 10.04 22.26 0.22 -2.08 16 28 C -0.09 -1.30 10.04 22.35 0.22 -1.08 16 29 C -0.12 -1.87 9.72 22.22 0.22 -1.66 16 30 C -0.04 -0.79 4.18 -19.66 -0.08 -0.87 16 31 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.08 1.00 6.59 -2.39 -0.02 0.98 16 33 H 0.11 0.38 4.28 -2.39 -0.01 0.37 16 34 H 0.09 3.03 8.03 -2.39 -0.02 3.01 16 35 H 0.04 1.65 7.51 -2.38 -0.02 1.64 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.10 2.90 6.85 -2.39 -0.02 2.88 16 38 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.06 2.96 6.88 -2.38 -0.02 2.94 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.13 0.82 5.30 -2.39 -0.01 0.80 16 42 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.41 8.40 8.92 -92.71 -0.83 7.57 16 44 H 0.12 3.18 7.78 -2.91 -0.02 3.16 16 45 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 46 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 47 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -91.81 380.05 1.55 -90.26 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.18 Total: 12.79 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 6.56 Total: 21.20 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -7.11 Total: -127.15 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.11 Total: -46.03 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -91.81 1.55 -90.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.215 kcal (2) G-P(sol) polarization free energy of solvation -91.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds