Wall clock time and date at job start Wed Apr 1 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99848 * 2 1 4 4 C 1.52997 * 109.46561 * 265.90508 * 3 2 1 5 5 H 1.08995 * 112.74266 * 317.64760 * 4 3 2 6 6 C 1.53501 * 113.46743 * 88.39463 * 4 3 2 7 7 C 1.53619 * 83.30626 * 140.82693 * 6 4 3 8 8 N 1.47066 * 113.46564 * 186.90366 * 4 3 2 9 9 C 1.36939 * 136.05750 * 38.06762 * 8 4 3 10 10 H 1.07999 * 119.99928 * 0.88820 * 9 8 4 11 11 C 1.38815 * 119.99839 * 180.89284 * 9 8 4 12 12 N 1.31620 * 120.00449 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99590 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47247 * 89.99771 * 13 11 9 15 15 H 1.48503 * 109.46921 * 209.99735 * 13 11 9 16 16 H 1.48490 * 109.47301 * 329.99501 * 13 11 9 17 17 C 1.34773 * 120.00369 * 179.97438 * 2 1 3 18 18 O 1.21281 * 120.00252 * 185.25378 * 17 2 1 19 19 C 1.50703 * 119.99397 * 4.98611 * 17 2 1 20 20 H 1.08990 * 109.36675 * 38.26794 * 19 17 2 21 21 C 1.52660 * 109.35954 * 278.65897 * 19 17 2 22 22 N 1.46121 * 110.98906 * 290.32183 * 21 19 17 23 23 C 1.34675 * 121.05711 * 319.83106 * 22 21 19 24 24 O 1.21545 * 120.33035 * 187.95106 * 23 22 21 25 25 C 1.47817 * 119.32909 * 7.93327 * 23 22 21 26 26 C 1.39313 * 120.93619 * 193.69368 * 25 23 22 27 27 C 1.38064 * 119.61075 * 178.31338 * 26 25 23 28 28 C 1.38386 * 120.16668 * 0.02678 * 27 26 25 29 29 C 1.38416 * 120.41490 * 0.33859 * 28 27 26 30 30 C 1.37838 * 119.96909 * 359.93021 * 29 28 27 31 31 H 1.08994 * 109.47491 * 264.37465 * 1 2 3 32 32 H 1.09001 * 109.46845 * 24.38055 * 1 2 3 33 33 H 1.09004 * 109.46482 * 144.37226 * 1 2 3 34 34 H 1.09000 * 109.47413 * 25.90426 * 3 2 1 35 35 H 1.08995 * 109.47302 * 145.90748 * 3 2 1 36 36 H 1.09000 * 114.20544 * 254.43058 * 6 4 3 37 37 H 1.09001 * 114.20734 * 27.25660 * 6 4 3 38 38 H 1.08996 * 113.50404 * 219.18055 * 7 6 4 39 39 H 1.09002 * 113.46760 * 88.76900 * 7 6 4 40 40 H 0.96995 * 120.00306 * 180.02562 * 12 11 9 41 41 H 1.09000 * 109.17223 * 50.71458 * 21 19 17 42 42 H 1.09006 * 109.17063 * 169.93734 * 21 19 17 43 43 H 0.96994 * 119.46853 * 139.83687 * 22 21 19 44 44 H 1.07999 * 120.19779 * 358.29507 * 26 25 23 45 45 H 1.08001 * 119.92080 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.78912 * 180.36352 * 28 27 26 47 47 H 1.07999 * 120.01368 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5416 1.6588 -1.4388 5 1 2.8865 0.8131 -2.0337 6 6 1.4455 2.4839 -2.1273 7 6 2.6410 3.2519 -2.7111 8 7 3.4171 2.8367 -1.5328 9 6 4.4848 3.3302 -0.8315 10 1 4.8690 2.7877 0.0196 11 6 5.0730 4.5279 -1.2145 12 7 4.6050 5.1889 -2.2520 13 14 6.5298 5.2006 -0.2581 14 1 7.7905 4.6804 -0.8456 15 1 6.5259 6.6840 -0.3289 16 1 6.4311 4.7726 1.1603 17 6 2.1390 -1.1671 0.0005 18 8 3.3479 -1.1693 0.0967 19 6 1.3897 -2.4698 -0.1123 20 1 0.5601 -2.3504 -0.8091 21 6 0.8435 -2.8599 1.2588 22 7 1.9250 -3.2439 2.1631 23 6 2.9654 -3.9806 1.7287 24 8 3.7822 -4.4143 2.5173 25 6 3.1035 -4.2566 0.2831 26 6 3.9841 -5.2323 -0.1788 27 6 4.0659 -5.4918 -1.5324 28 6 3.2778 -4.7862 -2.4246 29 6 2.4069 -3.8107 -1.9707 30 6 2.3202 -3.5385 -0.6223 31 1 -0.3634 -0.1007 1.0226 32 1 -0.3633 0.9360 -0.4242 33 1 -0.3632 -0.8354 -0.5987 34 1 1.5786 2.0457 0.4489 35 1 3.1162 1.1580 0.5760 36 1 0.8662 1.9296 -2.8657 37 1 0.8298 3.0682 -1.4434 38 1 2.4803 4.3285 -2.7677 39 1 3.0124 2.8316 -3.6457 40 1 5.0162 6.0255 -2.5198 41 1 0.3051 -2.0128 1.6839 42 1 0.1569 -3.6989 1.1452 43 1 1.8931 -2.9639 3.0912 44 1 4.5995 -5.7822 0.5178 45 1 4.7466 -6.2474 -1.8959 46 1 3.3423 -4.9983 -3.4816 47 1 1.7952 -3.2636 -2.6728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:53 Heat of formation + Delta-G solvation = 29.229345 kcal Electronic energy + Delta-G solvation = -30635.069153 eV Core-core repulsion = 26592.112810 eV Total energy + Delta-G solvation = -4042.956343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.30860 -39.53225 -38.30759 -37.98159 -36.09865 -35.30453 -32.50447 -32.13885 -31.22148 -29.91984 -28.27798 -27.90401 -26.46200 -24.65844 -24.15772 -23.45396 -22.77575 -21.64533 -20.27954 -19.26632 -18.66157 -17.84433 -17.48124 -17.08093 -16.60047 -16.26541 -15.90194 -15.32324 -15.20717 -14.87545 -14.63263 -14.55390 -14.13094 -13.85989 -13.80802 -13.61182 -13.39628 -13.02489 -12.83113 -12.70336 -12.66442 -12.40435 -12.29554 -11.83710 -11.65929 -11.51770 -11.26897 -11.10504 -10.87200 -10.73538 -10.43391 -10.10267 -9.88549 -9.82689 -9.79105 -9.50897 -9.37740 -9.11208 -8.91082 -8.76823 -8.34486 -6.85946 -5.73447 -3.05975 0.67906 1.13034 2.63723 2.71899 2.95479 3.08012 3.42795 3.48198 3.49577 3.69543 4.06617 4.28522 4.32521 4.46318 4.50970 4.61217 4.80432 4.87028 4.92388 5.07039 5.11961 5.16463 5.20429 5.26539 5.31433 5.46948 5.49938 5.56012 5.62898 5.74205 5.78461 5.95092 6.08052 6.14177 6.15906 6.24079 6.27138 6.41498 6.49011 6.57433 6.66435 6.71179 6.84116 6.95367 7.24498 7.41345 7.47296 7.59863 8.01857 8.03310 8.27125 9.07895 9.74086 10.66556 11.43795 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.003124 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.348769 B = 8962.039393 C = 9280.829208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.610 5.610 3 C 0.116 3.884 4 C 0.135 3.865 5 H 0.041 0.959 6 C -0.167 4.167 7 C 0.152 3.848 8 N -0.599 5.599 9 C -0.215 4.215 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.514 3.486 18 O -0.513 6.513 19 C -0.093 4.093 20 H 0.123 0.877 21 C 0.125 3.875 22 N -0.725 5.725 23 C 0.574 3.426 24 O -0.535 6.535 25 C -0.117 4.117 26 C -0.060 4.060 27 C -0.128 4.128 28 C -0.091 4.091 29 C -0.116 4.116 30 C -0.031 4.031 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.407 0.593 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.633 -19.674 1.726 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.344 5.344 3 C -0.006 4.006 4 C 0.027 3.973 5 H 0.059 0.941 6 C -0.206 4.206 7 C 0.027 3.973 8 N -0.325 5.325 9 C -0.342 4.342 10 H 0.098 0.902 11 C -0.203 4.203 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.216 1.216 16 H -0.206 1.206 17 C 0.300 3.700 18 O -0.387 6.387 19 C -0.115 4.115 20 H 0.140 0.860 21 C 0.000 4.000 22 N -0.379 5.379 23 C 0.363 3.637 24 O -0.413 6.413 25 C -0.120 4.120 26 C -0.078 4.078 27 C -0.146 4.146 28 C -0.109 4.109 29 C -0.134 4.134 30 C -0.032 4.032 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.243 0.757 44 H 0.153 0.847 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.261 -19.676 2.093 24.390 hybrid contribution 0.789 0.703 0.494 1.167 sum -13.472 -18.972 2.587 23.412 Atomic orbital electron populations 1.21903 0.80043 1.03760 1.01287 1.47885 1.06698 1.06353 1.73439 1.21917 0.97006 0.82240 0.99482 1.22396 0.90222 0.91651 0.93042 0.94143 1.23767 0.96790 0.99849 1.00158 1.22040 0.86206 0.99555 0.89526 1.45671 1.35212 1.21388 1.30262 1.18935 1.05138 1.02492 1.07626 0.90218 1.24756 0.99687 0.97617 0.98263 1.69830 1.42743 1.16831 1.27423 0.86139 0.82492 0.77999 0.79304 1.21601 1.21632 1.20559 1.20121 0.88022 0.84434 0.77462 1.90796 1.13845 1.86676 1.47403 1.20718 0.98973 0.92730 0.99115 0.85970 1.21245 0.89081 1.01469 0.88187 1.45537 1.23165 1.55304 1.13872 1.18156 0.80384 0.76921 0.88275 1.90790 1.42121 1.51214 1.57131 1.19588 0.99947 0.99880 0.92624 1.21181 0.95382 0.95315 0.95961 1.21178 0.99892 1.00653 0.92850 1.21330 0.94754 0.94860 0.99999 1.20930 0.99946 0.98378 0.94195 1.19369 0.95623 0.94553 0.93627 0.92723 0.90079 0.91446 0.90220 0.90092 0.92867 0.90553 0.90910 0.96071 0.93735 0.88739 0.90099 0.75664 0.84677 0.85221 0.85333 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 9.51 59.85 0.57 1.13 16 2 N -0.61 -8.02 2.88 -181.57 -0.52 -8.54 16 3 C 0.12 2.05 5.34 -4.04 -0.02 2.03 16 4 C 0.14 2.76 4.29 -72.38 -0.31 2.45 16 5 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.17 -2.99 8.02 -26.15 -0.21 -3.20 16 7 C 0.15 3.60 7.42 -8.43 -0.06 3.53 16 8 N -0.60 -15.54 3.65 -176.76 -0.65 -16.19 16 9 C -0.21 -6.16 10.55 -15.06 -0.16 -6.32 16 10 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.71 11.49 55.49 0.64 -27.08 16 13 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 C 0.51 7.47 6.62 -10.99 -0.07 7.40 16 18 O -0.51 -10.39 15.71 5.56 0.09 -10.31 16 19 C -0.09 -0.92 2.00 -93.15 -0.19 -1.10 16 20 H 0.12 0.77 6.32 -51.93 -0.33 0.44 16 21 C 0.13 0.95 6.30 -4.42 -0.03 0.92 16 22 N -0.73 -7.94 5.43 -61.72 -0.34 -8.28 16 23 C 0.57 8.44 7.81 -12.39 -0.10 8.34 16 24 O -0.54 -9.56 17.37 5.33 0.09 -9.47 16 25 C -0.12 -1.60 5.65 -105.07 -0.59 -2.20 16 26 C -0.06 -0.74 9.64 -39.25 -0.38 -1.12 16 27 C -0.13 -1.29 10.04 -39.59 -0.40 -1.69 16 28 C -0.09 -0.88 10.04 -39.46 -0.40 -1.27 16 29 C -0.12 -1.21 9.72 -39.66 -0.39 -1.60 16 30 C -0.03 -0.36 4.34 -104.31 -0.45 -0.82 16 31 H 0.05 0.31 7.41 -51.93 -0.39 -0.07 16 32 H 0.08 0.63 8.03 -51.93 -0.42 0.21 16 33 H 0.07 0.33 6.10 -51.93 -0.32 0.02 16 34 H 0.08 1.31 7.74 -51.93 -0.40 0.90 16 35 H 0.08 1.72 7.48 -51.93 -0.39 1.33 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 38 H 0.07 1.89 7.09 -51.93 -0.37 1.52 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.09 0.50 6.64 -51.93 -0.34 0.16 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.41 3.90 8.92 -40.82 -0.36 3.54 16 44 H 0.14 1.60 7.78 -52.49 -0.41 1.20 16 45 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 47 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -38.82 384.51 -9.83 -48.65 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.64 Total: 1.39 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -3.28 Total: 6.19 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.87 Total: -60.08 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.18 Total: -19.78 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.82 -9.83 -48.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.879 kcal (2) G-P(sol) polarization free energy of solvation -38.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds