Wall clock time and date at job start Wed Apr 1 2020 02:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99848 * 2 1 4 4 C 1.52997 * 109.46561 * 265.90508 * 3 2 1 5 5 H 1.08995 * 112.74266 * 317.64760 * 4 3 2 6 6 C 1.53501 * 113.46743 * 88.39463 * 4 3 2 7 7 C 1.53619 * 83.30626 * 140.82693 * 6 4 3 8 8 N 1.47066 * 113.46564 * 186.90366 * 4 3 2 9 9 C 1.36939 * 136.05750 * 38.06762 * 8 4 3 10 10 H 1.07999 * 119.99928 * 0.88820 * 9 8 4 11 11 C 1.38815 * 119.99839 * 180.89284 * 9 8 4 12 12 N 1.31620 * 120.00449 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99590 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47247 * 89.99771 * 13 11 9 15 15 H 1.48503 * 109.46921 * 209.99735 * 13 11 9 16 16 H 1.48490 * 109.47301 * 329.99501 * 13 11 9 17 17 C 1.34773 * 120.00369 * 179.97438 * 2 1 3 18 18 O 1.21281 * 120.00252 * 185.25378 * 17 2 1 19 19 C 1.50703 * 119.99397 * 4.98611 * 17 2 1 20 20 H 1.08990 * 109.36675 * 38.26794 * 19 17 2 21 21 C 1.52660 * 109.35954 * 278.65897 * 19 17 2 22 22 N 1.46121 * 110.98906 * 290.32183 * 21 19 17 23 23 C 1.34675 * 121.05711 * 319.83106 * 22 21 19 24 24 O 1.21545 * 120.33035 * 187.95106 * 23 22 21 25 25 C 1.47817 * 119.32909 * 7.93327 * 23 22 21 26 26 C 1.39313 * 120.93619 * 193.69368 * 25 23 22 27 27 C 1.38064 * 119.61075 * 178.31338 * 26 25 23 28 28 C 1.38386 * 120.16668 * 0.02678 * 27 26 25 29 29 C 1.38416 * 120.41490 * 0.33859 * 28 27 26 30 30 C 1.37838 * 119.96909 * 359.93021 * 29 28 27 31 31 H 1.08994 * 109.47491 * 264.37465 * 1 2 3 32 32 H 1.09001 * 109.46845 * 24.38055 * 1 2 3 33 33 H 1.09004 * 109.46482 * 144.37226 * 1 2 3 34 34 H 1.09000 * 109.47413 * 25.90426 * 3 2 1 35 35 H 1.08995 * 109.47302 * 145.90748 * 3 2 1 36 36 H 1.09000 * 114.20544 * 254.43058 * 6 4 3 37 37 H 1.09001 * 114.20734 * 27.25660 * 6 4 3 38 38 H 1.08996 * 113.50404 * 219.18055 * 7 6 4 39 39 H 1.09002 * 113.46760 * 88.76900 * 7 6 4 40 40 H 0.96995 * 120.00306 * 180.02562 * 12 11 9 41 41 H 1.09000 * 109.17223 * 50.71458 * 21 19 17 42 42 H 1.09006 * 109.17063 * 169.93734 * 21 19 17 43 43 H 0.96994 * 119.46853 * 139.83687 * 22 21 19 44 44 H 1.07999 * 120.19779 * 358.29507 * 26 25 23 45 45 H 1.08001 * 119.92080 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.78912 * 180.36352 * 28 27 26 47 47 H 1.07999 * 120.01368 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5416 1.6588 -1.4388 5 1 2.8865 0.8131 -2.0337 6 6 1.4455 2.4839 -2.1273 7 6 2.6410 3.2519 -2.7111 8 7 3.4171 2.8367 -1.5328 9 6 4.4848 3.3302 -0.8315 10 1 4.8690 2.7877 0.0196 11 6 5.0730 4.5279 -1.2145 12 7 4.6050 5.1889 -2.2520 13 14 6.5298 5.2006 -0.2581 14 1 7.7905 4.6804 -0.8456 15 1 6.5259 6.6840 -0.3289 16 1 6.4311 4.7726 1.1603 17 6 2.1390 -1.1671 0.0005 18 8 3.3479 -1.1693 0.0967 19 6 1.3897 -2.4698 -0.1123 20 1 0.5601 -2.3504 -0.8091 21 6 0.8435 -2.8599 1.2588 22 7 1.9250 -3.2439 2.1631 23 6 2.9654 -3.9806 1.7287 24 8 3.7822 -4.4143 2.5173 25 6 3.1035 -4.2566 0.2831 26 6 3.9841 -5.2323 -0.1788 27 6 4.0659 -5.4918 -1.5324 28 6 3.2778 -4.7862 -2.4246 29 6 2.4069 -3.8107 -1.9707 30 6 2.3202 -3.5385 -0.6223 31 1 -0.3634 -0.1007 1.0226 32 1 -0.3633 0.9360 -0.4242 33 1 -0.3632 -0.8354 -0.5987 34 1 1.5786 2.0457 0.4489 35 1 3.1162 1.1580 0.5760 36 1 0.8662 1.9296 -2.8657 37 1 0.8298 3.0682 -1.4434 38 1 2.4803 4.3285 -2.7677 39 1 3.0124 2.8316 -3.6457 40 1 5.0162 6.0255 -2.5198 41 1 0.3051 -2.0128 1.6839 42 1 0.1569 -3.6989 1.1452 43 1 1.8931 -2.9639 3.0912 44 1 4.5995 -5.7822 0.5178 45 1 4.7466 -6.2474 -1.8959 46 1 3.3423 -4.9983 -3.4816 47 1 1.7952 -3.2636 -2.6728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:52 Heat of formation + Delta-G solvation = 0.460125 kcal Electronic energy + Delta-G solvation = -30636.316680 eV Core-core repulsion = 26592.112810 eV Total energy + Delta-G solvation = -4044.203870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22733 -40.72381 -39.66895 -39.13804 -37.04142 -36.47004 -34.30512 -33.35281 -32.04672 -30.91085 -29.91582 -29.36327 -27.34972 -25.54556 -25.42336 -25.01076 -24.08451 -22.68566 -21.30204 -21.01543 -19.62413 -18.81843 -18.66398 -18.36907 -17.81904 -17.44020 -17.04547 -16.73941 -16.22935 -16.05826 -15.82843 -15.76878 -15.43963 -15.28565 -14.84231 -14.71640 -14.39320 -14.26930 -13.84873 -13.65988 -13.55343 -13.40695 -13.36096 -13.32271 -13.04740 -12.91206 -12.64311 -12.50655 -12.43829 -12.24946 -12.00539 -11.81827 -11.61839 -11.27445 -11.13219 -10.91162 -10.85776 -10.27705 -9.94291 -9.76388 -9.54930 -8.92528 -7.93772 -5.26316 -0.19830 0.30850 1.39516 1.41752 1.50116 1.60528 1.75441 1.98148 2.20673 2.44800 2.82143 3.26561 3.30352 3.47569 3.48153 3.61732 3.66701 3.85335 3.87838 4.13269 4.21363 4.23360 4.32043 4.34632 4.42555 4.51076 4.53137 4.54206 4.65820 4.73873 4.80304 4.89416 4.94271 4.98145 5.01508 5.08046 5.13420 5.23526 5.28533 5.36090 5.45095 5.48808 5.54865 5.76489 5.76873 5.92262 5.94638 6.04867 6.47304 6.90589 7.05645 7.22381 7.58024 8.59126 9.23109 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.003124 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.348769 B = 8962.039393 C = 9280.829208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.603 5.603 3 C 0.132 3.868 4 C 0.136 3.864 5 H 0.023 0.977 6 C -0.122 4.122 7 C 0.140 3.860 8 N -0.633 5.633 9 C -0.224 4.224 10 H 0.069 0.931 11 C -0.061 4.061 12 N -0.949 5.949 13 Si 0.970 3.030 14 H -0.291 1.291 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.508 3.492 18 O -0.585 6.585 19 C -0.083 4.083 20 H 0.172 0.828 21 C 0.118 3.882 22 N -0.719 5.719 23 C 0.561 3.439 24 O -0.589 6.589 25 C -0.147 4.147 26 C -0.084 4.084 27 C -0.129 4.129 28 C -0.091 4.091 29 C -0.122 4.122 30 C -0.043 4.043 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.032 0.968 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.008 0.992 40 H 0.249 0.751 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.410 0.590 44 H 0.124 0.876 45 H 0.154 0.846 46 H 0.160 0.840 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.511 -20.499 0.779 28.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.335 5.335 3 C 0.008 3.992 4 C 0.029 3.971 5 H 0.041 0.959 6 C -0.160 4.160 7 C 0.015 3.985 8 N -0.359 5.359 9 C -0.352 4.352 10 H 0.087 0.913 11 C -0.254 4.254 12 N -0.598 5.598 13 Si 0.799 3.201 14 H -0.219 1.219 15 H -0.211 1.211 16 H -0.197 1.197 17 C 0.296 3.704 18 O -0.464 6.464 19 C -0.104 4.104 20 H 0.189 0.811 21 C -0.005 4.005 22 N -0.371 5.371 23 C 0.351 3.649 24 O -0.471 6.471 25 C -0.150 4.150 26 C -0.103 4.103 27 C -0.147 4.147 28 C -0.109 4.109 29 C -0.139 4.139 30 C -0.044 4.044 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.051 0.949 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.058 0.942 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.247 0.753 44 H 0.142 0.858 45 H 0.171 0.829 46 H 0.178 0.822 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.263 -20.507 1.146 27.484 hybrid contribution 1.973 0.911 0.720 2.289 sum -16.290 -19.596 1.866 25.550 Atomic orbital electron populations 1.22395 0.75871 1.05898 1.04057 1.47917 1.08975 1.04227 1.72398 1.21416 0.96088 0.85025 0.96716 1.22483 0.89894 0.89901 0.94852 0.95936 1.23512 0.94793 0.97709 0.99946 1.22116 0.89040 0.98517 0.88834 1.46082 1.35166 1.23731 1.30922 1.19131 1.05983 1.02520 1.07565 0.91343 1.25499 1.02319 0.98126 0.99481 1.69989 1.43931 1.17025 1.28836 0.85201 0.79196 0.77335 0.78386 1.21886 1.21106 1.19721 1.21029 0.87465 0.86089 0.75812 1.90780 1.17265 1.87761 1.50551 1.20855 0.99125 0.88898 1.01546 0.81096 1.21704 0.88193 1.04168 0.86477 1.45628 1.22972 1.53705 1.14791 1.18567 0.80661 0.76933 0.88761 1.90737 1.44279 1.53742 1.58334 1.19763 1.01519 1.01328 0.92434 1.21329 0.95860 0.95952 0.97164 1.21496 1.00199 1.01104 0.91900 1.21776 0.93697 0.93978 1.01438 1.21366 1.00124 0.98416 0.94033 1.19654 0.95887 0.94803 0.94081 0.90008 0.89442 0.87563 0.88688 0.94947 0.88378 0.88703 0.93857 0.97435 0.94182 0.85609 0.86343 0.75258 0.85813 0.82853 0.82239 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 9.51 127.77 1.21 1.76 16 2 N -0.60 -14.03 2.88 -846.76 -2.44 -16.47 16 3 C 0.13 4.54 5.34 86.38 0.46 5.00 16 4 C 0.14 5.44 4.29 41.80 0.18 5.62 16 5 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 6 C -0.12 -3.98 8.02 30.97 0.25 -3.73 16 7 C 0.14 6.64 7.42 83.23 0.62 7.26 16 8 N -0.63 -33.39 3.65 -713.14 -2.60 -36.00 16 9 C -0.22 -13.25 10.55 84.03 0.89 -12.36 16 10 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 11 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 12 N -0.95 -58.58 11.49 21.65 0.25 -58.33 16 13 Si 0.97 48.18 29.55 68.60 2.03 50.20 16 14 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 17 C 0.51 13.82 6.62 87.66 0.58 14.40 16 18 O -0.58 -24.32 15.71 -3.03 -0.05 -24.37 16 19 C -0.08 -1.32 2.00 -12.43 -0.02 -1.34 16 20 H 0.17 0.97 6.32 -2.39 -0.02 0.96 16 21 C 0.12 1.31 6.30 86.34 0.54 1.85 16 22 N -0.72 -15.15 5.43 -467.53 -2.54 -17.69 16 23 C 0.56 17.18 7.81 86.79 0.68 17.85 16 24 O -0.59 -22.76 17.37 -3.86 -0.07 -22.83 16 25 C -0.15 -4.09 5.65 -20.15 -0.11 -4.21 16 26 C -0.08 -2.18 9.64 22.49 0.22 -1.96 16 27 C -0.13 -2.51 10.04 22.26 0.22 -2.29 16 28 C -0.09 -1.53 10.04 22.35 0.22 -1.30 16 29 C -0.12 -2.18 9.72 22.22 0.22 -1.96 16 30 C -0.04 -0.94 4.34 -19.66 -0.09 -1.03 16 31 H 0.08 0.40 7.41 -2.39 -0.02 0.38 16 32 H 0.09 0.79 8.03 -2.39 -0.02 0.77 16 33 H 0.11 0.22 6.10 -2.38 -0.01 0.20 16 34 H 0.09 2.93 7.74 -2.39 -0.02 2.91 16 35 H 0.03 1.43 7.48 -2.39 -0.02 1.41 16 36 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.09 2.80 7.92 -2.39 -0.02 2.78 16 38 H 0.04 2.28 7.09 -2.39 -0.02 2.26 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.13 0.64 6.64 -2.39 -0.02 0.62 16 42 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.41 7.72 8.92 -92.71 -0.83 6.89 16 44 H 0.12 3.30 7.78 -2.91 -0.02 3.28 16 45 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 46 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 47 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -95.13 384.51 1.28 -93.85 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.17 Total: 11.23 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.53 Total: 20.40 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -7.34 Total: -128.48 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.11 Total: -47.20 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.20 kcal Total: -95.13 1.28 -93.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.308 kcal (2) G-P(sol) polarization free energy of solvation -95.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds