Wall clock time and date at job start Wed Apr 1 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 120.00209 * 2 1 4 4 C 1.52995 * 109.47328 * 263.28122 * 3 2 1 5 5 H 1.09001 * 112.77709 * 302.57864 * 4 3 2 6 6 C 1.53241 * 113.38384 * 171.87417 * 4 3 2 7 7 C 1.53498 * 83.42909 * 219.29076 * 6 4 3 8 8 N 1.47061 * 113.47065 * 73.36178 * 4 3 2 9 9 C 1.36947 * 136.05369 * 321.93281 * 8 4 3 10 10 H 1.08002 * 119.99772 * 37.01070 * 9 8 4 11 11 C 1.38810 * 119.99586 * 217.00196 * 9 8 4 12 12 N 1.31609 * 120.00588 * 356.78672 * 11 9 8 13 13 Si 1.86807 * 119.99320 * 176.78564 * 11 9 8 14 14 H 1.48498 * 109.47332 * 60.00620 * 13 11 9 15 15 H 1.48496 * 109.47129 * 300.00009 * 13 11 9 16 16 H 1.48502 * 109.46995 * 180.02562 * 13 11 9 17 17 C 1.34772 * 119.99518 * 180.02562 * 2 1 3 18 18 O 1.21287 * 119.99639 * 184.63534 * 17 2 1 19 19 C 1.50704 * 120.00551 * 4.62892 * 17 2 1 20 20 H 1.09004 * 109.35573 * 44.46363 * 19 17 2 21 21 C 1.52664 * 109.36465 * 284.72564 * 19 17 2 22 22 N 1.46146 * 110.90129 * 290.54150 * 21 19 17 23 23 C 1.34684 * 120.96132 * 319.69133 * 22 21 19 24 24 O 1.21557 * 120.33326 * 187.30379 * 23 22 21 25 25 C 1.47820 * 119.33184 * 7.32750 * 23 22 21 26 26 C 1.39236 * 121.10469 * 192.82264 * 25 23 22 27 27 C 1.38057 * 119.66577 * 179.58182 * 26 25 23 28 28 C 1.38390 * 120.14429 * 0.38629 * 27 26 25 29 29 C 1.38408 * 120.40335 * 0.56143 * 28 27 26 30 30 C 1.38107 * 119.91390 * 359.73069 * 29 28 27 31 31 H 1.08997 * 109.46764 * 91.03101 * 1 2 3 32 32 H 1.08989 * 109.47123 * 211.03214 * 1 2 3 33 33 H 1.09003 * 109.46751 * 331.03632 * 1 2 3 34 34 H 1.09002 * 109.46850 * 143.27613 * 3 2 1 35 35 H 1.09006 * 109.46963 * 23.28196 * 3 2 1 36 36 H 1.08996 * 114.32742 * 105.65866 * 6 4 3 37 37 H 1.09002 * 114.01585 * 332.89803 * 6 4 3 38 38 H 1.09004 * 113.46451 * 271.11833 * 7 6 4 39 39 H 1.09001 * 113.47176 * 140.67761 * 7 6 4 40 40 H 0.97003 * 119.99813 * 5.75355 * 12 11 9 41 41 H 1.09002 * 109.19268 * 50.90320 * 21 19 17 42 42 H 1.09000 * 109.19287 * 170.21611 * 21 19 17 43 43 H 0.96997 * 119.51962 * 139.67447 * 22 21 19 44 44 H 1.08005 * 120.16480 * 359.59826 * 26 25 23 45 45 H 1.08001 * 119.93132 * 180.41454 * 27 26 25 46 46 H 1.08004 * 119.79753 * 180.58237 * 28 27 26 47 47 H 1.07994 * 120.00165 * 179.74479 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5988 1.6260 -1.4325 5 1 3.2010 0.8516 -1.9077 6 6 3.1967 3.0308 -1.5643 7 6 2.3843 3.0628 -2.8662 8 7 1.4718 2.0817 -2.2600 9 6 0.1518 1.7448 -2.4001 10 1 -0.4288 1.4641 -1.5337 11 6 -0.4399 1.7641 -3.6557 12 7 0.2495 2.1668 -4.7020 13 14 -2.2147 1.2185 -3.8601 14 1 -3.0965 2.0824 -3.0347 15 1 -2.3524 -0.1932 -3.4203 16 1 -2.6061 1.3319 -5.2882 17 6 2.1389 -1.1672 -0.0005 18 8 3.3487 -1.1690 0.0844 19 6 1.3890 -2.4702 -0.1064 20 1 0.6250 -2.3856 -0.8793 21 6 0.7233 -2.7813 1.2317 22 7 1.7215 -3.1154 2.2455 23 6 2.7885 -3.8792 1.9421 24 8 3.5399 -4.2601 2.8184 25 6 3.0368 -4.2493 0.5327 26 6 3.9572 -5.2399 0.2005 27 6 4.1594 -5.5679 -1.1252 28 6 3.4565 -4.9096 -2.1190 29 6 2.5549 -3.9107 -1.7951 30 6 2.3496 -3.5707 -0.4723 31 1 -0.3633 -0.0185 -1.0275 32 1 -0.3633 -0.8805 0.5297 33 1 -0.3633 0.8992 0.4977 34 1 3.0926 1.1714 0.6145 35 1 1.5617 2.0554 0.4062 36 1 4.2766 3.0472 -1.7108 37 1 2.8518 3.7327 -0.8049 38 1 2.9288 2.6750 -3.7272 39 1 1.9164 4.0276 -3.0623 40 1 1.1936 2.3704 -4.6116 41 1 0.1560 -1.9106 1.5607 42 1 0.0443 -3.6248 1.1066 43 1 1.6142 -2.7819 3.1500 44 1 4.5099 -5.7493 0.9761 45 1 4.8674 -6.3402 -1.3872 46 1 3.6122 -5.1772 -3.1537 47 1 2.0129 -3.3984 -2.5761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:57 Heat of formation + Delta-G solvation = 31.992469 kcal Electronic energy + Delta-G solvation = -31354.925973 eV Core-core repulsion = 27312.089447 eV Total energy + Delta-G solvation = -4042.836525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20545 -39.45078 -38.27187 -38.02950 -36.02376 -35.06433 -32.65051 -32.29767 -31.11974 -29.86111 -28.24169 -27.55122 -26.38032 -24.54079 -24.05074 -23.35729 -22.81598 -21.61716 -20.19551 -19.34301 -18.60927 -17.76793 -17.46383 -17.37584 -16.50444 -16.15028 -15.80583 -15.16497 -15.03393 -14.82023 -14.58766 -14.46452 -14.00373 -13.87246 -13.74338 -13.65116 -13.37144 -13.09497 -12.94386 -12.64637 -12.33074 -12.29501 -12.18579 -11.85536 -11.48133 -11.43979 -11.16428 -10.95022 -10.92854 -10.66008 -10.60984 -10.20333 -10.02337 -9.77284 -9.60253 -9.27888 -9.23307 -9.00305 -8.80012 -8.59329 -8.14776 -6.92178 -6.06861 -3.46740 0.78627 1.25203 2.76265 2.84635 3.06058 3.28696 3.31868 3.35191 3.53871 3.81240 4.20994 4.39800 4.40511 4.47261 4.68319 4.81742 4.88781 5.01413 5.06605 5.18074 5.24546 5.27717 5.31829 5.42688 5.43290 5.50197 5.68410 5.71456 5.73881 5.88531 5.92082 6.05949 6.09647 6.18366 6.29137 6.30947 6.31975 6.36640 6.48697 6.58117 6.64788 6.72817 6.81608 6.88530 7.01938 7.18267 7.60246 7.72481 8.09179 8.24157 8.43512 8.78969 9.67562 10.58250 11.17436 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012567 B = 0.003802 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.443947 B = 7362.428685 C = 7688.688601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.592 5.592 3 C 0.124 3.876 4 C 0.121 3.879 5 H 0.043 0.957 6 C -0.157 4.157 7 C 0.123 3.877 8 N -0.602 5.602 9 C -0.322 4.322 10 H 0.076 0.924 11 C -0.024 4.024 12 N -0.921 5.921 13 Si 1.069 2.931 14 H -0.290 1.290 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.521 3.479 18 O -0.534 6.534 19 C -0.094 4.094 20 H 0.126 0.874 21 C 0.118 3.882 22 N -0.724 5.724 23 C 0.574 3.426 24 O -0.539 6.539 25 C -0.121 4.121 26 C -0.061 4.061 27 C -0.130 4.130 28 C -0.090 4.090 29 C -0.115 4.115 30 C -0.023 4.023 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.042 0.958 40 H 0.271 0.729 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.406 0.594 44 H 0.134 0.866 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -11.057 9.341 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.323 5.323 3 C 0.001 3.999 4 C 0.014 3.986 5 H 0.061 0.939 6 C -0.196 4.196 7 C -0.003 4.003 8 N -0.329 5.329 9 C -0.450 4.450 10 H 0.093 0.907 11 C -0.227 4.227 12 N -0.561 5.561 13 Si 0.898 3.102 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.209 1.209 17 C 0.307 3.693 18 O -0.411 6.411 19 C -0.116 4.116 20 H 0.144 0.856 21 C -0.007 4.007 22 N -0.377 5.377 23 C 0.363 3.637 24 O -0.417 6.417 25 C -0.124 4.124 26 C -0.079 4.079 27 C -0.148 4.148 28 C -0.109 4.109 29 C -0.133 4.133 30 C -0.024 4.024 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.242 0.758 44 H 0.152 0.848 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.630 -11.502 8.524 14.330 hybrid contribution 1.103 0.470 1.018 1.573 sum 0.474 -11.032 9.542 14.593 Atomic orbital electron populations 1.22513 0.79579 1.01566 1.04692 1.47553 1.07135 1.05619 1.71991 1.21832 0.96056 0.83706 0.98352 1.22531 0.90352 0.94061 0.91656 0.93950 1.23503 0.98164 0.97859 1.00120 1.22288 0.90750 0.93869 0.93385 1.45571 1.03772 1.36568 1.47030 1.19886 0.83645 1.47329 0.94117 0.90676 1.26267 1.06650 0.98005 0.91789 1.70744 1.10537 1.42979 1.31853 0.83463 0.74306 0.75986 0.76473 1.21689 1.21695 1.20871 1.19970 0.87757 0.84492 0.77039 1.90704 1.13846 1.87058 1.49479 1.20700 0.98547 0.92539 0.99857 0.85635 1.21493 0.90250 1.02391 0.86572 1.45578 1.24917 1.53424 1.13819 1.18189 0.80011 0.76995 0.88521 1.90776 1.46942 1.54271 1.49745 1.19490 1.00471 1.00065 0.92408 1.21102 0.94821 0.95203 0.96817 1.21145 1.00445 1.00815 0.92429 1.21339 0.94879 0.94951 0.99693 1.21089 0.99125 0.97777 0.95263 1.19386 0.95549 0.94107 0.93394 0.88785 0.92436 0.90972 0.91183 0.90504 0.92339 0.90448 0.94880 0.93999 0.91660 0.88112 0.90025 0.75790 0.84827 0.85331 0.85384 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 7.98 59.85 0.48 1.29 16 2 N -0.59 -9.67 2.89 -181.57 -0.52 -10.19 16 3 C 0.12 2.19 5.26 -4.05 -0.02 2.17 16 4 C 0.12 2.49 4.25 -72.53 -0.31 2.18 16 5 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.16 -2.90 8.01 -26.35 -0.21 -3.11 16 7 C 0.12 2.74 6.61 -8.51 -0.06 2.68 16 8 N -0.60 -14.28 3.40 -177.16 -0.60 -14.88 16 9 C -0.32 -8.02 9.14 -15.06 -0.14 -8.16 16 10 H 0.08 1.71 4.30 -52.49 -0.23 1.48 16 11 C -0.02 -0.63 5.50 -17.44 -0.10 -0.72 16 12 N -0.92 -27.05 13.63 55.49 0.76 -26.29 16 13 Si 1.07 22.98 29.92 -169.99 -5.09 17.89 16 14 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.29 -5.69 7.11 56.52 0.40 -5.28 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C 0.52 8.76 6.68 -10.99 -0.07 8.69 16 18 O -0.53 -10.99 15.73 5.55 0.09 -10.90 16 19 C -0.09 -1.23 1.93 -93.15 -0.18 -1.41 16 20 H 0.13 1.46 7.58 -51.93 -0.39 1.06 16 21 C 0.12 1.16 5.99 -4.41 -0.03 1.14 16 22 N -0.72 -8.70 5.43 -61.70 -0.34 -9.03 16 23 C 0.57 8.86 7.81 -12.38 -0.10 8.76 16 24 O -0.54 -9.78 17.38 5.32 0.09 -9.69 16 25 C -0.12 -1.80 5.72 -105.18 -0.60 -2.40 16 26 C -0.06 -0.80 9.63 -39.28 -0.38 -1.18 16 27 C -0.13 -1.46 10.04 -39.59 -0.40 -1.86 16 28 C -0.09 -1.04 10.04 -39.46 -0.40 -1.44 16 29 C -0.11 -1.51 9.72 -39.57 -0.38 -1.90 16 30 C -0.02 -0.33 4.26 -104.30 -0.44 -0.77 16 31 H 0.09 1.55 5.53 -51.93 -0.29 1.27 16 32 H 0.06 0.56 4.37 -51.94 -0.23 0.33 16 33 H 0.07 0.95 7.69 -51.93 -0.40 0.55 16 34 H 0.07 1.23 7.57 -51.93 -0.39 0.84 16 35 H 0.08 1.30 7.81 -51.93 -0.41 0.90 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 38 H 0.03 0.78 7.56 -51.93 -0.39 0.39 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.27 7.98 5.52 -40.82 -0.23 7.76 16 41 H 0.10 0.80 5.55 -51.93 -0.29 0.51 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.41 4.17 8.92 -40.82 -0.36 3.80 16 44 H 0.13 1.66 7.79 -52.48 -0.41 1.25 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 47 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -35.30 373.32 -9.50 -44.80 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.19 Total: 8.72 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -3.33 Total: 3.95 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.71 Total: -60.40 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.18 Total: -20.59 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.09 Total: 17.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.30 -9.50 -44.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.793 kcal (2) G-P(sol) polarization free energy of solvation -35.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds