Wall clock time and date at job start Wed Apr 1 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 120.00209 * 2 1 4 4 C 1.52995 * 109.47328 * 263.28122 * 3 2 1 5 5 H 1.09001 * 112.77709 * 302.57864 * 4 3 2 6 6 C 1.53241 * 113.38384 * 171.87417 * 4 3 2 7 7 C 1.53498 * 83.42909 * 219.29076 * 6 4 3 8 8 N 1.47061 * 113.47065 * 73.36178 * 4 3 2 9 9 C 1.36947 * 136.05369 * 321.93281 * 8 4 3 10 10 H 1.08002 * 119.99772 * 37.01070 * 9 8 4 11 11 C 1.38810 * 119.99586 * 217.00196 * 9 8 4 12 12 N 1.31609 * 120.00588 * 356.78672 * 11 9 8 13 13 Si 1.86807 * 119.99320 * 176.78564 * 11 9 8 14 14 H 1.48498 * 109.47332 * 60.00620 * 13 11 9 15 15 H 1.48496 * 109.47129 * 300.00009 * 13 11 9 16 16 H 1.48502 * 109.46995 * 180.02562 * 13 11 9 17 17 C 1.34772 * 119.99518 * 180.02562 * 2 1 3 18 18 O 1.21287 * 119.99639 * 184.63534 * 17 2 1 19 19 C 1.50704 * 120.00551 * 4.62892 * 17 2 1 20 20 H 1.09004 * 109.35573 * 44.46363 * 19 17 2 21 21 C 1.52664 * 109.36465 * 284.72564 * 19 17 2 22 22 N 1.46146 * 110.90129 * 290.54150 * 21 19 17 23 23 C 1.34684 * 120.96132 * 319.69133 * 22 21 19 24 24 O 1.21557 * 120.33326 * 187.30379 * 23 22 21 25 25 C 1.47820 * 119.33184 * 7.32750 * 23 22 21 26 26 C 1.39236 * 121.10469 * 192.82264 * 25 23 22 27 27 C 1.38057 * 119.66577 * 179.58182 * 26 25 23 28 28 C 1.38390 * 120.14429 * 0.38629 * 27 26 25 29 29 C 1.38408 * 120.40335 * 0.56143 * 28 27 26 30 30 C 1.38107 * 119.91390 * 359.73069 * 29 28 27 31 31 H 1.08997 * 109.46764 * 91.03101 * 1 2 3 32 32 H 1.08989 * 109.47123 * 211.03214 * 1 2 3 33 33 H 1.09003 * 109.46751 * 331.03632 * 1 2 3 34 34 H 1.09002 * 109.46850 * 143.27613 * 3 2 1 35 35 H 1.09006 * 109.46963 * 23.28196 * 3 2 1 36 36 H 1.08996 * 114.32742 * 105.65866 * 6 4 3 37 37 H 1.09002 * 114.01585 * 332.89803 * 6 4 3 38 38 H 1.09004 * 113.46451 * 271.11833 * 7 6 4 39 39 H 1.09001 * 113.47176 * 140.67761 * 7 6 4 40 40 H 0.97003 * 119.99813 * 5.75355 * 12 11 9 41 41 H 1.09002 * 109.19268 * 50.90320 * 21 19 17 42 42 H 1.09000 * 109.19287 * 170.21611 * 21 19 17 43 43 H 0.96997 * 119.51962 * 139.67447 * 22 21 19 44 44 H 1.08005 * 120.16480 * 359.59826 * 26 25 23 45 45 H 1.08001 * 119.93132 * 180.41454 * 27 26 25 46 46 H 1.08004 * 119.79753 * 180.58237 * 28 27 26 47 47 H 1.07994 * 120.00165 * 179.74479 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5988 1.6260 -1.4325 5 1 3.2010 0.8516 -1.9077 6 6 3.1967 3.0308 -1.5643 7 6 2.3843 3.0628 -2.8662 8 7 1.4718 2.0817 -2.2600 9 6 0.1518 1.7448 -2.4001 10 1 -0.4288 1.4641 -1.5337 11 6 -0.4399 1.7641 -3.6557 12 7 0.2495 2.1668 -4.7020 13 14 -2.2147 1.2185 -3.8601 14 1 -3.0965 2.0824 -3.0347 15 1 -2.3524 -0.1932 -3.4203 16 1 -2.6061 1.3319 -5.2882 17 6 2.1389 -1.1672 -0.0005 18 8 3.3487 -1.1690 0.0844 19 6 1.3890 -2.4702 -0.1064 20 1 0.6250 -2.3856 -0.8793 21 6 0.7233 -2.7813 1.2317 22 7 1.7215 -3.1154 2.2455 23 6 2.7885 -3.8792 1.9421 24 8 3.5399 -4.2601 2.8184 25 6 3.0368 -4.2493 0.5327 26 6 3.9572 -5.2399 0.2005 27 6 4.1594 -5.5679 -1.1252 28 6 3.4565 -4.9096 -2.1190 29 6 2.5549 -3.9107 -1.7951 30 6 2.3496 -3.5707 -0.4723 31 1 -0.3633 -0.0185 -1.0275 32 1 -0.3633 -0.8805 0.5297 33 1 -0.3633 0.8992 0.4977 34 1 3.0926 1.1714 0.6145 35 1 1.5617 2.0554 0.4062 36 1 4.2766 3.0472 -1.7108 37 1 2.8518 3.7327 -0.8049 38 1 2.9288 2.6750 -3.7272 39 1 1.9164 4.0276 -3.0623 40 1 1.1936 2.3704 -4.6116 41 1 0.1560 -1.9106 1.5607 42 1 0.0443 -3.6248 1.1066 43 1 1.6142 -2.7819 3.1500 44 1 4.5099 -5.7493 0.9761 45 1 4.8674 -6.3402 -1.3872 46 1 3.6122 -5.1772 -3.1537 47 1 2.0129 -3.3984 -2.5761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:56 Heat of formation + Delta-G solvation = 7.544643 kcal Electronic energy + Delta-G solvation = -31355.986110 eV Core-core repulsion = 27312.089447 eV Total energy + Delta-G solvation = -4043.896663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.29033 -40.80178 -39.75905 -39.17149 -37.10956 -36.41094 -34.54820 -33.35667 -32.09682 -30.99877 -29.79603 -29.15300 -27.62407 -25.66647 -25.11297 -25.02706 -24.26169 -22.75506 -21.34445 -21.08225 -19.81904 -19.17447 -18.80038 -18.40316 -17.69993 -17.41119 -17.03610 -16.44491 -16.25727 -16.19644 -15.88113 -15.59276 -15.47992 -15.38646 -15.12012 -14.78257 -14.77464 -14.22255 -14.12919 -13.78199 -13.71638 -13.41047 -13.34704 -13.09199 -12.90569 -12.61153 -12.55510 -12.50303 -12.28311 -12.16684 -12.08726 -11.89641 -11.43140 -11.14582 -11.06842 -10.92752 -10.51525 -10.28962 -9.98909 -9.79420 -9.52141 -8.90385 -8.07322 -5.48824 -0.22527 0.26809 1.55565 1.61173 1.70451 1.72536 1.85462 2.02560 2.16760 2.67314 2.78476 3.23666 3.30870 3.40583 3.41876 3.53309 3.63456 3.78127 3.83757 4.04126 4.12769 4.17362 4.24978 4.28195 4.37428 4.41417 4.48872 4.50890 4.58288 4.63096 4.71058 4.76667 4.80534 4.86762 4.90123 4.93967 4.97049 5.14115 5.24180 5.33345 5.41612 5.43337 5.59590 5.74782 5.79309 5.88215 5.99481 6.29715 6.44649 6.73380 7.03981 7.15156 7.72262 8.64732 9.16109 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012567 B = 0.003802 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.443947 B = 7362.428685 C = 7688.688601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.595 5.595 3 C 0.131 3.869 4 C 0.123 3.877 5 H 0.009 0.991 6 C -0.130 4.130 7 C 0.115 3.885 8 N -0.622 5.622 9 C -0.313 4.313 10 H 0.103 0.897 11 C -0.087 4.087 12 N -0.970 5.970 13 Si 1.114 2.886 14 H -0.269 1.269 15 H -0.256 1.256 16 H -0.307 1.307 17 C 0.516 3.484 18 O -0.579 6.579 19 C -0.092 4.092 20 H 0.143 0.857 21 C 0.117 3.883 22 N -0.715 5.715 23 C 0.566 3.434 24 O -0.581 6.581 25 C -0.144 4.144 26 C -0.075 4.075 27 C -0.124 4.124 28 C -0.089 4.089 29 C -0.131 4.131 30 C -0.037 4.037 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.011 0.989 39 H 0.026 0.974 40 H 0.254 0.746 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.414 0.586 44 H 0.134 0.866 45 H 0.161 0.839 46 H 0.155 0.845 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -12.107 10.899 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.325 5.325 3 C 0.007 3.993 4 C 0.016 3.984 5 H 0.027 0.973 6 C -0.168 4.168 7 C -0.010 4.010 8 N -0.350 5.350 9 C -0.441 4.441 10 H 0.120 0.880 11 C -0.282 4.282 12 N -0.614 5.614 13 Si 0.937 3.063 14 H -0.194 1.194 15 H -0.181 1.181 16 H -0.234 1.234 17 C 0.304 3.696 18 O -0.459 6.459 19 C -0.113 4.113 20 H 0.161 0.839 21 C -0.007 4.007 22 N -0.367 5.367 23 C 0.355 3.645 24 O -0.462 6.462 25 C -0.147 4.147 26 C -0.094 4.094 27 C -0.142 4.142 28 C -0.107 4.107 29 C -0.149 4.149 30 C -0.038 4.038 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.029 0.971 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.145 0.855 42 H 0.133 0.867 43 H 0.252 0.748 44 H 0.152 0.848 45 H 0.178 0.822 46 H 0.173 0.827 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.438 -12.540 10.131 16.305 hybrid contribution 1.743 0.797 0.510 1.983 sum -0.695 -11.743 10.641 15.862 Atomic orbital electron populations 1.22612 0.77756 1.04398 1.03820 1.47686 1.08280 1.05063 1.71477 1.21643 0.96754 0.84999 0.95926 1.22493 0.88901 0.94347 0.92611 0.97338 1.23369 0.98978 0.96694 0.97791 1.22265 0.91313 0.92797 0.94664 1.45958 1.04277 1.37508 1.47209 1.20506 0.84469 1.44300 0.94781 0.87998 1.27705 1.10332 0.98271 0.91895 1.70884 1.09904 1.47147 1.33457 0.82924 0.70212 0.77813 0.75395 1.19443 1.18088 1.23403 1.20665 0.87468 0.85698 0.75758 1.90682 1.15993 1.87805 1.51409 1.20784 0.98356 0.89957 1.02223 0.83945 1.21777 0.89658 1.04841 0.84390 1.45570 1.24287 1.52013 1.14791 1.18440 0.80395 0.77137 0.88553 1.90740 1.48577 1.56200 1.50694 1.19645 1.01602 1.01140 0.92310 1.21332 0.94821 0.95296 0.97953 1.21499 1.00322 1.00948 0.91412 1.21709 0.93819 0.94002 1.01197 1.21312 0.99899 0.98577 0.95111 1.19532 0.96131 0.94516 0.93602 0.91362 0.87960 0.89925 0.91097 0.89116 0.90185 0.88196 0.97094 0.95548 0.93536 0.85501 0.86726 0.74834 0.84789 0.82184 0.82701 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.32 7.98 127.77 1.02 2.34 16 2 N -0.59 -18.14 2.89 -846.75 -2.45 -20.59 16 3 C 0.13 4.39 5.26 86.38 0.45 4.85 16 4 C 0.12 5.02 4.25 41.70 0.18 5.20 16 5 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 6 C -0.13 -4.64 8.01 30.84 0.25 -4.39 16 7 C 0.12 5.28 6.61 83.18 0.55 5.83 16 8 N -0.62 -29.53 3.40 -714.40 -2.43 -31.96 16 9 C -0.31 -15.33 9.14 84.03 0.77 -14.56 16 10 H 0.10 4.37 4.30 -2.91 -0.01 4.36 16 11 C -0.09 -4.63 5.50 84.86 0.47 -4.17 16 12 N -0.97 -58.79 13.63 21.65 0.30 -58.50 16 13 Si 1.11 45.33 29.92 68.60 2.05 47.39 16 14 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 15 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 16 H -0.31 -13.63 7.11 99.48 0.71 -12.93 16 17 C 0.52 16.62 6.68 87.66 0.59 17.21 16 18 O -0.58 -23.82 15.73 -3.05 -0.05 -23.87 16 19 C -0.09 -2.18 1.93 -12.43 -0.02 -2.20 16 20 H 0.14 2.88 7.58 -2.38 -0.02 2.86 16 21 C 0.12 1.90 5.99 86.33 0.52 2.41 16 22 N -0.71 -15.77 5.43 -467.45 -2.54 -18.31 16 23 C 0.57 17.20 7.81 86.79 0.68 17.88 16 24 O -0.58 -21.37 17.38 -3.89 -0.07 -21.43 16 25 C -0.14 -4.19 5.72 -20.23 -0.12 -4.30 16 26 C -0.08 -1.96 9.63 22.47 0.22 -1.74 16 27 C -0.12 -2.58 10.04 22.26 0.22 -2.35 16 28 C -0.09 -1.89 10.04 22.35 0.22 -1.67 16 29 C -0.13 -3.32 9.72 22.28 0.22 -3.10 16 30 C -0.04 -0.99 4.26 -19.65 -0.08 -1.08 16 31 H 0.07 2.03 5.53 -2.39 -0.01 2.01 16 32 H 0.10 1.47 4.37 -2.39 -0.01 1.46 16 33 H 0.08 1.82 7.69 -2.39 -0.02 1.80 16 34 H 0.07 2.39 7.57 -2.39 -0.02 2.38 16 35 H 0.09 2.81 7.81 -2.38 -0.02 2.79 16 36 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.10 3.16 8.11 -2.39 -0.02 3.14 16 38 H 0.01 0.56 7.56 -2.39 -0.02 0.54 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.25 15.68 5.52 -92.71 -0.51 15.17 16 41 H 0.13 1.38 5.55 -2.39 -0.01 1.36 16 42 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.41 7.68 8.92 -92.71 -0.83 6.85 16 44 H 0.13 3.36 7.79 -2.91 -0.02 3.34 16 45 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 46 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 47 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -81.69 373.32 1.39 -80.29 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.45 Total: 30.83 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.12 Total: 16.15 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -7.12 Total: -129.35 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.12 Total: -45.30 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.05 Total: 47.39 kcal Total: -81.69 1.39 -80.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.838 kcal (2) G-P(sol) polarization free energy of solvation -81.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds