Wall clock time and date at job start Wed Apr 1 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00264 * 2 1 4 4 C 1.53000 * 109.47097 * 269.26972 * 3 2 1 5 5 H 1.09001 * 112.73776 * 43.55440 * 4 3 2 6 6 C 1.53500 * 113.46494 * 272.81179 * 4 3 2 7 7 C 1.53619 * 83.30421 * 219.16659 * 6 4 3 8 8 N 1.47064 * 113.47166 * 174.29680 * 4 3 2 9 9 C 1.36940 * 136.05588 * 321.87129 * 8 4 3 10 10 H 1.08001 * 120.00065 * 29.01483 * 9 8 4 11 11 C 1.38816 * 119.99740 * 209.01721 * 9 8 4 12 12 N 1.31617 * 119.99747 * 184.00468 * 11 9 8 13 13 Si 1.86801 * 120.00118 * 4.00024 * 11 9 8 14 14 H 1.48500 * 109.46885 * 84.38537 * 13 11 9 15 15 H 1.48500 * 109.47154 * 204.38285 * 13 11 9 16 16 H 1.48499 * 109.47110 * 324.38778 * 13 11 9 17 17 C 1.34778 * 119.99937 * 179.97438 * 2 1 3 18 18 O 1.21282 * 120.00223 * 183.64712 * 17 2 1 19 19 C 1.50695 * 120.00215 * 3.64734 * 17 2 1 20 20 H 1.09004 * 109.36062 * 311.98777 * 19 17 2 21 21 C 1.52658 * 109.35954 * 71.71172 * 19 17 2 22 22 N 1.46146 * 110.91265 * 69.39793 * 21 19 17 23 23 C 1.34679 * 120.95797 * 40.42004 * 22 21 19 24 24 O 1.21549 * 120.33198 * 172.42955 * 23 22 21 25 25 C 1.47828 * 119.33452 * 352.45197 * 23 22 21 26 26 C 1.39239 * 121.09099 * 166.78751 * 25 23 22 27 27 C 1.38057 * 119.66793 * 180.25443 * 26 25 23 28 28 C 1.38386 * 120.14281 * 359.79958 * 27 26 25 29 29 C 1.38411 * 120.40775 * 359.68826 * 28 27 26 30 30 C 1.37842 * 119.99316 * 0.11189 * 29 28 27 31 31 H 1.09000 * 109.46828 * 215.40744 * 1 2 3 32 32 H 1.09006 * 109.46873 * 335.40632 * 1 2 3 33 33 H 1.08996 * 109.47091 * 95.40531 * 1 2 3 34 34 H 1.09002 * 109.47086 * 29.26516 * 3 2 1 35 35 H 1.08998 * 109.47748 * 149.26787 * 3 2 1 36 36 H 1.08997 * 114.20483 * 332.73035 * 6 4 3 37 37 H 1.08998 * 114.20601 * 105.56454 * 6 4 3 38 38 H 1.08996 * 113.41555 * 271.24347 * 7 6 4 39 39 H 1.08998 * 113.50669 * 140.81426 * 7 6 4 40 40 H 0.97004 * 119.99637 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.19075 * 309.03025 * 21 19 17 42 42 H 1.09000 * 109.19432 * 189.76602 * 21 19 17 43 43 H 0.96995 * 119.52726 * 220.40439 * 22 21 19 44 44 H 1.08003 * 120.16550 * 359.97438 * 26 25 23 45 45 H 1.07999 * 119.93319 * 179.79227 * 27 26 25 46 46 H 1.08004 * 119.79868 * 179.69447 * 28 27 26 47 47 H 1.07992 * 120.00513 * 180.08200 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4685 1.7011 -1.4424 5 1 1.6025 1.5702 -2.0912 6 6 3.7622 1.1142 -2.0237 7 6 3.8980 2.5077 -2.6557 8 7 3.0840 3.0325 -1.5489 9 6 2.9554 4.2328 -0.9024 10 1 2.6525 4.2583 0.1339 11 6 3.2142 5.4169 -1.5792 12 7 3.1674 6.5652 -0.9378 13 14 3.6289 5.3804 -3.4003 14 1 2.3737 5.3525 -4.1933 15 1 4.4112 6.5920 -3.7542 16 1 4.4314 4.1676 -3.7010 17 6 2.1389 -1.1672 0.0005 18 8 3.3498 -1.1683 0.0673 19 6 1.3877 -2.4710 -0.0819 20 1 0.5703 -2.4633 0.6391 21 6 0.8198 -2.6398 -1.4888 22 7 1.8886 -2.8702 -2.4586 23 6 2.9334 -3.6666 -2.1620 24 8 3.7436 -3.9609 -3.0189 25 6 3.0846 -4.1796 -0.7839 26 6 3.9759 -5.2092 -0.4937 27 6 4.0898 -5.6693 0.8030 28 6 3.3246 -5.1070 1.8096 29 6 2.4448 -4.0762 1.5281 30 6 2.3252 -3.6053 0.2381 31 1 -0.3633 -0.8376 0.5954 32 1 -0.3633 0.9345 0.4277 33 1 -0.3633 -0.0968 -1.0231 34 1 1.6028 2.0316 0.5024 35 1 3.1442 1.1417 0.5251 36 1 4.5237 0.8856 -1.2781 37 1 3.6047 0.3102 -2.7427 38 1 3.4133 2.5913 -3.6284 39 1 4.9204 2.8855 -2.6598 40 1 3.3487 7.3926 -1.4107 41 1 0.2735 -1.7379 -1.7653 42 1 0.1366 -3.4890 -1.5000 43 1 1.8447 -2.4437 -3.3287 44 1 4.5720 -5.6487 -1.2798 45 1 4.7773 -6.4700 1.0323 46 1 3.4144 -5.4746 2.8212 47 1 1.8518 -3.6412 2.3189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:01 Heat of formation + Delta-G solvation = 40.149687 kcal Electronic energy + Delta-G solvation = -30978.903196 eV Core-core repulsion = 26936.420394 eV Total energy + Delta-G solvation = -4042.482802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.35698 -39.61481 -38.39464 -38.15470 -36.13433 -35.40806 -32.53528 -32.26778 -31.27414 -30.03239 -28.60949 -28.16577 -26.61557 -24.72709 -24.19868 -23.32032 -22.98142 -21.86144 -20.38590 -19.36204 -18.74350 -17.87953 -17.48606 -17.10754 -16.66531 -16.34089 -16.04330 -15.44416 -15.21869 -15.10763 -14.85626 -14.61130 -14.20987 -13.92947 -13.85281 -13.51273 -13.26564 -13.14513 -12.99381 -12.77044 -12.67287 -12.49381 -12.34283 -12.13124 -11.84812 -11.69375 -11.48897 -11.33754 -11.08366 -10.80806 -10.34977 -10.16448 -10.10839 -9.83701 -9.77669 -9.38421 -9.18611 -9.17598 -8.98351 -8.80545 -8.32023 -7.00439 -5.95242 -3.38560 0.63061 1.07591 2.58399 2.67356 2.94515 3.05088 3.37245 3.44695 3.46350 3.64231 4.02064 4.25366 4.29599 4.41320 4.54230 4.57011 4.75173 4.81969 4.85692 4.90448 5.04557 5.09592 5.12688 5.25151 5.27172 5.31021 5.33959 5.51168 5.58690 5.69186 5.75231 5.85826 5.90681 6.03450 6.10018 6.16359 6.17750 6.32206 6.42848 6.52577 6.55323 6.60943 6.64190 6.67712 6.95425 7.12582 7.39271 7.43469 8.02563 8.20300 8.33854 8.66095 9.61526 10.39067 11.21151 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.003123 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.546075 B = 8964.729648 C = 9430.962696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.610 5.610 3 C 0.117 3.883 4 C 0.130 3.870 5 H 0.043 0.957 6 C -0.145 4.145 7 C 0.108 3.892 8 N -0.616 5.616 9 C -0.228 4.228 10 H 0.092 0.908 11 C 0.026 3.974 12 N -0.919 5.919 13 Si 0.865 3.135 14 H -0.287 1.287 15 H -0.298 1.298 16 H -0.242 1.242 17 C 0.517 3.483 18 O -0.514 6.514 19 C -0.093 4.093 20 H 0.122 0.878 21 C 0.122 3.878 22 N -0.724 5.724 23 C 0.572 3.428 24 O -0.534 6.534 25 C -0.118 4.118 26 C -0.058 4.058 27 C -0.128 4.128 28 C -0.092 4.092 29 C -0.117 4.117 30 C -0.027 4.027 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.052 0.948 40 H 0.263 0.737 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.408 0.592 44 H 0.135 0.865 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 -25.384 4.093 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C -0.005 4.005 4 C 0.022 3.978 5 H 0.061 0.939 6 C -0.184 4.184 7 C -0.017 4.017 8 N -0.345 5.345 9 C -0.355 4.355 10 H 0.110 0.890 11 C -0.174 4.174 12 N -0.563 5.563 13 Si 0.694 3.306 14 H -0.214 1.214 15 H -0.225 1.225 16 H -0.166 1.166 17 C 0.303 3.697 18 O -0.388 6.388 19 C -0.115 4.115 20 H 0.140 0.860 21 C -0.003 4.003 22 N -0.377 5.377 23 C 0.360 3.640 24 O -0.411 6.411 25 C -0.121 4.121 26 C -0.077 4.077 27 C -0.146 4.146 28 C -0.110 4.110 29 C -0.135 4.135 30 C -0.028 4.028 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.245 0.755 44 H 0.153 0.847 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.935 -25.171 3.977 26.690 hybrid contribution -0.171 0.725 -1.265 1.468 sum -8.106 -24.446 2.712 25.897 Atomic orbital electron populations 1.21928 0.79976 1.03538 1.01610 1.47857 1.06735 1.06392 1.73378 1.21858 0.97547 0.82300 0.98832 1.22463 0.94642 0.87017 0.93651 0.93934 1.23539 0.98763 0.95951 1.00118 1.22749 0.95900 0.91050 0.91970 1.45961 1.41992 1.08107 1.38391 1.18515 1.43410 0.79466 0.94067 0.89046 1.25199 0.99396 0.94807 0.97954 1.69725 1.52902 0.97325 1.36308 0.87208 0.78983 0.77920 0.86456 1.21353 1.22485 1.16590 1.20085 0.88049 0.84370 0.77228 1.90760 1.13552 1.86736 1.47754 1.20721 0.98822 0.92376 0.99601 0.86002 1.21317 0.89352 1.03343 0.86316 1.45562 1.23302 1.50123 1.18748 1.18167 0.80476 0.77575 0.87783 1.90801 1.42606 1.58135 1.49555 1.19612 0.99973 0.99557 0.92987 1.21156 0.95102 0.94280 0.97179 1.21167 1.00063 1.00819 0.92580 1.21312 0.94892 0.95414 0.99418 1.20890 0.99808 0.97455 0.95310 1.19381 0.95563 0.94328 0.93575 0.91488 0.90147 0.92475 0.90156 0.89576 0.89566 0.92930 0.94811 0.92976 0.92667 0.88438 0.90142 0.75486 0.84696 0.85262 0.85442 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 9.38 59.85 0.56 1.13 16 2 N -0.61 -7.62 2.87 -181.58 -0.52 -8.14 16 3 C 0.12 1.98 5.42 -4.04 -0.02 1.96 16 4 C 0.13 2.50 4.31 -72.39 -0.31 2.19 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.15 -2.81 7.54 -26.15 -0.20 -3.01 16 7 C 0.11 2.39 5.29 -8.44 -0.04 2.34 16 8 N -0.62 -14.85 3.28 -176.77 -0.58 -15.43 16 9 C -0.23 -6.39 11.02 -15.06 -0.17 -6.56 16 10 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 11 C 0.03 0.75 5.50 -17.43 -0.10 0.65 16 12 N -0.92 -28.44 13.97 55.49 0.78 -27.66 16 13 Si 0.87 22.05 26.66 -169.99 -4.53 17.52 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 15 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 16 H -0.24 -5.72 3.95 56.52 0.22 -5.49 16 17 C 0.52 6.81 6.75 -10.99 -0.07 6.73 16 18 O -0.51 -9.14 15.13 5.56 0.08 -9.05 16 19 C -0.09 -0.84 2.00 -93.15 -0.19 -1.02 16 20 H 0.12 0.66 6.62 -51.93 -0.34 0.32 16 21 C 0.12 0.90 6.27 -4.41 -0.03 0.87 16 22 N -0.72 -7.76 5.43 -61.70 -0.34 -8.09 16 23 C 0.57 8.03 7.81 -12.38 -0.10 7.93 16 24 O -0.53 -9.27 17.38 5.32 0.09 -9.18 16 25 C -0.12 -1.49 5.76 -105.06 -0.60 -2.10 16 26 C -0.06 -0.66 9.63 -39.28 -0.38 -1.04 16 27 C -0.13 -1.15 10.04 -39.59 -0.40 -1.55 16 28 C -0.09 -0.77 10.04 -39.46 -0.40 -1.17 16 29 C -0.12 -1.06 9.72 -39.66 -0.39 -1.45 16 30 C -0.03 -0.29 4.21 -104.28 -0.44 -0.73 16 31 H 0.07 0.32 6.39 -51.93 -0.33 -0.01 16 32 H 0.08 0.66 7.83 -51.93 -0.41 0.25 16 33 H 0.06 0.38 6.83 -51.93 -0.35 0.02 16 34 H 0.08 1.38 7.85 -51.93 -0.41 0.98 16 35 H 0.09 1.66 7.12 -51.93 -0.37 1.29 16 36 H 0.09 1.79 7.93 -51.93 -0.41 1.37 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.74 7.02 -51.93 -0.36 0.37 16 39 H 0.05 1.20 7.00 -51.93 -0.36 0.83 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 41 H 0.10 0.56 5.86 -51.93 -0.30 0.26 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.41 4.03 8.92 -40.82 -0.36 3.67 16 44 H 0.14 1.49 7.79 -52.48 -0.41 1.08 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -37.48 375.68 -9.32 -46.80 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.70 Total: 2.39 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -3.26 Total: 5.18 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.66 Total: -59.33 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.18 Total: -18.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.53 Total: 17.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.48 -9.32 -46.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.950 kcal (2) G-P(sol) polarization free energy of solvation -37.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds