Wall clock time and date at job start Wed Apr 1 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00264 * 2 1 4 4 C 1.53000 * 109.47097 * 269.26972 * 3 2 1 5 5 H 1.09001 * 112.73776 * 43.55440 * 4 3 2 6 6 C 1.53500 * 113.46494 * 272.81179 * 4 3 2 7 7 C 1.53619 * 83.30421 * 219.16659 * 6 4 3 8 8 N 1.47064 * 113.47166 * 174.29680 * 4 3 2 9 9 C 1.36940 * 136.05588 * 321.87129 * 8 4 3 10 10 H 1.08001 * 120.00065 * 29.01483 * 9 8 4 11 11 C 1.38816 * 119.99740 * 209.01721 * 9 8 4 12 12 N 1.31617 * 119.99747 * 184.00468 * 11 9 8 13 13 Si 1.86801 * 120.00118 * 4.00024 * 11 9 8 14 14 H 1.48500 * 109.46885 * 84.38537 * 13 11 9 15 15 H 1.48500 * 109.47154 * 204.38285 * 13 11 9 16 16 H 1.48499 * 109.47110 * 324.38778 * 13 11 9 17 17 C 1.34778 * 119.99937 * 179.97438 * 2 1 3 18 18 O 1.21282 * 120.00223 * 183.64712 * 17 2 1 19 19 C 1.50695 * 120.00215 * 3.64734 * 17 2 1 20 20 H 1.09004 * 109.36062 * 311.98777 * 19 17 2 21 21 C 1.52658 * 109.35954 * 71.71172 * 19 17 2 22 22 N 1.46146 * 110.91265 * 69.39793 * 21 19 17 23 23 C 1.34679 * 120.95797 * 40.42004 * 22 21 19 24 24 O 1.21549 * 120.33198 * 172.42955 * 23 22 21 25 25 C 1.47828 * 119.33452 * 352.45197 * 23 22 21 26 26 C 1.39239 * 121.09099 * 166.78751 * 25 23 22 27 27 C 1.38057 * 119.66793 * 180.25443 * 26 25 23 28 28 C 1.38386 * 120.14281 * 359.79958 * 27 26 25 29 29 C 1.38411 * 120.40775 * 359.68826 * 28 27 26 30 30 C 1.37842 * 119.99316 * 0.11189 * 29 28 27 31 31 H 1.09000 * 109.46828 * 215.40744 * 1 2 3 32 32 H 1.09006 * 109.46873 * 335.40632 * 1 2 3 33 33 H 1.08996 * 109.47091 * 95.40531 * 1 2 3 34 34 H 1.09002 * 109.47086 * 29.26516 * 3 2 1 35 35 H 1.08998 * 109.47748 * 149.26787 * 3 2 1 36 36 H 1.08997 * 114.20483 * 332.73035 * 6 4 3 37 37 H 1.08998 * 114.20601 * 105.56454 * 6 4 3 38 38 H 1.08996 * 113.41555 * 271.24347 * 7 6 4 39 39 H 1.08998 * 113.50669 * 140.81426 * 7 6 4 40 40 H 0.97004 * 119.99637 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.19075 * 309.03025 * 21 19 17 42 42 H 1.09000 * 109.19432 * 189.76602 * 21 19 17 43 43 H 0.96995 * 119.52726 * 220.40439 * 22 21 19 44 44 H 1.08003 * 120.16550 * 359.97438 * 26 25 23 45 45 H 1.07999 * 119.93319 * 179.79227 * 27 26 25 46 46 H 1.08004 * 119.79868 * 179.69447 * 28 27 26 47 47 H 1.07992 * 120.00513 * 180.08200 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4685 1.7011 -1.4424 5 1 1.6025 1.5702 -2.0912 6 6 3.7622 1.1142 -2.0237 7 6 3.8980 2.5077 -2.6557 8 7 3.0840 3.0325 -1.5489 9 6 2.9554 4.2328 -0.9024 10 1 2.6525 4.2583 0.1339 11 6 3.2142 5.4169 -1.5792 12 7 3.1674 6.5652 -0.9378 13 14 3.6289 5.3804 -3.4003 14 1 2.3737 5.3525 -4.1933 15 1 4.4112 6.5920 -3.7542 16 1 4.4314 4.1676 -3.7010 17 6 2.1389 -1.1672 0.0005 18 8 3.3498 -1.1683 0.0673 19 6 1.3877 -2.4710 -0.0819 20 1 0.5703 -2.4633 0.6391 21 6 0.8198 -2.6398 -1.4888 22 7 1.8886 -2.8702 -2.4586 23 6 2.9334 -3.6666 -2.1620 24 8 3.7436 -3.9609 -3.0189 25 6 3.0846 -4.1796 -0.7839 26 6 3.9759 -5.2092 -0.4937 27 6 4.0898 -5.6693 0.8030 28 6 3.3246 -5.1070 1.8096 29 6 2.4448 -4.0762 1.5281 30 6 2.3252 -3.6053 0.2381 31 1 -0.3633 -0.8376 0.5954 32 1 -0.3633 0.9345 0.4277 33 1 -0.3633 -0.0968 -1.0231 34 1 1.6028 2.0316 0.5024 35 1 3.1442 1.1417 0.5251 36 1 4.5237 0.8856 -1.2781 37 1 3.6047 0.3102 -2.7427 38 1 3.4133 2.5913 -3.6284 39 1 4.9204 2.8855 -2.6598 40 1 3.3487 7.3926 -1.4107 41 1 0.2735 -1.7379 -1.7653 42 1 0.1366 -3.4890 -1.5000 43 1 1.8447 -2.4437 -3.3287 44 1 4.5720 -5.6487 -1.2798 45 1 4.7773 -6.4700 1.0323 46 1 3.4144 -5.4746 2.8212 47 1 1.8518 -3.6412 2.3189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:00 Heat of formation + Delta-G solvation = 12.599948 kcal Electronic energy + Delta-G solvation = -30980.097842 eV Core-core repulsion = 26936.420394 eV Total energy + Delta-G solvation = -4043.677448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.20818 -40.79532 -39.80649 -39.10250 -37.01641 -36.48244 -34.46468 -33.31455 -32.00648 -31.04687 -30.38749 -29.39604 -27.46381 -25.64536 -25.07508 -24.96644 -24.44778 -22.75390 -21.40901 -21.03056 -19.61617 -18.84167 -18.68439 -18.31951 -17.79875 -17.50615 -17.28048 -16.82064 -16.31970 -16.10858 -15.79667 -15.50359 -15.40028 -15.34099 -14.99927 -14.67730 -14.48419 -14.29275 -14.03316 -13.87776 -13.66985 -13.52808 -13.40574 -13.31605 -13.26190 -12.91751 -12.76512 -12.56158 -12.43004 -12.15309 -12.01295 -11.98195 -11.71372 -11.12956 -11.07667 -10.87889 -10.61678 -10.22946 -9.90648 -9.72136 -9.61693 -8.97887 -8.17859 -5.57918 -0.15318 0.35447 1.34269 1.37620 1.43912 1.63237 1.79931 1.99073 2.23625 2.42941 2.83879 3.05874 3.11775 3.32706 3.51669 3.64433 3.65853 3.75458 3.90557 4.14195 4.16972 4.24342 4.28786 4.31197 4.37144 4.43314 4.48536 4.55345 4.57595 4.64348 4.71043 4.78982 4.83682 4.85740 4.93055 4.99584 5.01486 5.07023 5.29861 5.32939 5.40058 5.49026 5.53083 5.60155 5.80230 5.96142 6.09922 6.15610 6.47560 6.49204 7.10434 7.23237 7.41453 8.33083 9.02259 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.003123 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.546075 B = 8964.729648 C = 9430.962696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.605 5.605 3 C 0.130 3.870 4 C 0.137 3.863 5 H 0.066 0.934 6 C -0.124 4.124 7 C 0.101 3.899 8 N -0.642 5.642 9 C -0.212 4.212 10 H 0.063 0.937 11 C -0.037 4.037 12 N -0.966 5.966 13 Si 0.920 3.080 14 H -0.284 1.284 15 H -0.307 1.307 16 H -0.215 1.215 17 C 0.513 3.487 18 O -0.568 6.568 19 C -0.084 4.084 20 H 0.170 0.830 21 C 0.115 3.885 22 N -0.719 5.719 23 C 0.561 3.439 24 O -0.587 6.587 25 C -0.147 4.147 26 C -0.082 4.082 27 C -0.129 4.129 28 C -0.090 4.090 29 C -0.120 4.120 30 C -0.038 4.038 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.040 0.960 40 H 0.261 0.739 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.410 0.590 44 H 0.123 0.877 45 H 0.153 0.847 46 H 0.159 0.841 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -27.865 4.465 30.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.338 5.338 3 C 0.006 3.994 4 C 0.031 3.969 5 H 0.083 0.917 6 C -0.162 4.162 7 C -0.023 4.023 8 N -0.371 5.371 9 C -0.340 4.340 10 H 0.081 0.919 11 C -0.231 4.231 12 N -0.613 5.613 13 Si 0.747 3.253 14 H -0.210 1.210 15 H -0.235 1.235 16 H -0.138 1.138 17 C 0.301 3.699 18 O -0.446 6.446 19 C -0.105 4.105 20 H 0.187 0.813 21 C -0.009 4.009 22 N -0.370 5.370 23 C 0.350 3.650 24 O -0.469 6.469 25 C -0.150 4.150 26 C -0.101 4.101 27 C -0.147 4.147 28 C -0.108 4.108 29 C -0.138 4.138 30 C -0.039 4.039 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.247 0.753 44 H 0.141 0.859 45 H 0.170 0.830 46 H 0.177 0.823 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.655 -27.698 4.357 29.994 hybrid contribution 0.633 1.391 -1.236 1.965 sum -10.022 -26.307 3.121 28.323 Atomic orbital electron populations 1.22333 0.76598 1.05261 1.03882 1.47861 1.08592 1.04498 1.72873 1.21360 0.96813 0.84523 0.96717 1.22595 0.95087 0.83724 0.95492 0.91675 1.23271 0.98260 0.95091 0.99622 1.22906 0.95089 0.92209 0.92119 1.46053 1.43891 1.08277 1.38832 1.18394 1.41131 0.81151 0.93281 0.91918 1.25885 1.00567 0.94516 1.02120 1.69865 1.55597 0.97982 1.37904 0.86347 0.79000 0.78447 0.81458 1.21048 1.23498 1.13798 1.20878 0.87663 0.85593 0.75742 1.90751 1.16213 1.87557 1.50101 1.20836 0.99087 0.88736 1.01849 0.81320 1.21725 0.88570 1.06020 0.84538 1.45656 1.23123 1.48689 1.19562 1.18582 0.80614 0.77662 0.88118 1.90753 1.44738 1.60407 1.51001 1.19732 1.01593 1.00806 0.92866 1.21286 0.95582 0.95007 0.98230 1.21477 1.00361 1.01176 0.91707 1.21754 0.93729 0.94678 1.00604 1.21318 0.99869 0.97283 0.95288 1.19611 0.95770 0.94767 0.93754 0.87299 0.90611 0.90325 0.90864 0.92705 0.91405 0.90830 0.93214 0.94212 0.93003 0.86006 0.86677 0.75289 0.85935 0.82978 0.82295 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 9.38 127.77 1.20 1.86 16 2 N -0.61 -13.38 2.87 -846.77 -2.43 -15.81 16 3 C 0.13 4.30 5.42 86.38 0.47 4.77 16 4 C 0.14 5.08 4.31 41.80 0.18 5.26 16 5 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 6 C -0.12 -4.66 7.54 30.97 0.23 -4.42 16 7 C 0.10 4.31 5.29 83.22 0.44 4.75 16 8 N -0.64 -30.61 3.28 -713.17 -2.34 -32.95 16 9 C -0.21 -12.09 11.02 84.03 0.93 -11.16 16 10 H 0.06 3.86 8.06 -2.91 -0.02 3.83 16 11 C -0.04 -2.17 5.50 84.86 0.47 -1.70 16 12 N -0.97 -61.62 13.97 21.65 0.30 -61.32 16 13 Si 0.92 45.64 26.66 68.60 1.83 47.47 16 14 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 15 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 16 H -0.21 -9.62 3.95 99.48 0.39 -9.23 16 17 C 0.51 12.16 6.75 87.66 0.59 12.76 16 18 O -0.57 -19.86 15.13 -3.04 -0.05 -19.91 16 19 C -0.08 -1.15 2.00 -12.43 -0.02 -1.18 16 20 H 0.17 0.70 6.62 -2.39 -0.02 0.68 16 21 C 0.11 1.19 6.27 86.33 0.54 1.73 16 22 N -0.72 -14.05 5.43 -467.46 -2.54 -16.59 16 23 C 0.56 15.78 7.81 86.80 0.68 16.46 16 24 O -0.59 -21.39 17.38 -3.87 -0.07 -21.45 16 25 C -0.15 -3.64 5.76 -20.15 -0.12 -3.75 16 26 C -0.08 -1.89 9.63 22.47 0.22 -1.68 16 27 C -0.13 -2.13 10.04 22.26 0.22 -1.91 16 28 C -0.09 -1.22 10.04 22.35 0.22 -1.00 16 29 C -0.12 -1.76 9.72 22.22 0.22 -1.54 16 30 C -0.04 -0.71 4.21 -19.64 -0.08 -0.80 16 31 H 0.11 0.31 6.39 -2.39 -0.02 0.29 16 32 H 0.08 0.96 7.83 -2.38 -0.02 0.94 16 33 H 0.08 0.58 6.83 -2.39 -0.02 0.56 16 34 H 0.07 2.51 7.85 -2.39 -0.02 2.49 16 35 H 0.05 2.16 7.12 -2.39 -0.02 2.14 16 36 H 0.07 2.83 7.93 -2.39 -0.02 2.81 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.05 2.00 7.02 -2.39 -0.02 1.99 16 39 H 0.04 1.78 7.00 -2.39 -0.02 1.76 16 40 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 41 H 0.12 0.70 5.86 -2.38 -0.01 0.69 16 42 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.41 7.43 8.92 -92.71 -0.83 6.60 16 44 H 0.12 2.96 7.79 -2.91 -0.02 2.93 16 45 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 46 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 47 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -88.30 375.68 0.95 -87.35 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -0.13 Total: 14.76 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 6.38 Total: 18.45 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -7.01 Total: -126.66 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.11 Total: -41.36 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.83 Total: 47.47 kcal Total: -88.30 0.95 -87.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.948 kcal (2) G-P(sol) polarization free energy of solvation -88.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds