Wall clock time and date at job start Wed Apr 1 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36934 * 119.99626 * 2 1 4 4 H 1.07995 * 119.99904 * 204.61132 * 3 2 1 5 5 C 1.38815 * 120.00113 * 24.60872 * 3 2 1 6 6 N 1.31615 * 120.00087 * 6.94131 * 5 3 2 7 7 Si 1.86802 * 119.99993 * 186.94226 * 5 3 2 8 8 H 1.48499 * 109.47015 * 60.00133 * 7 5 3 9 9 H 1.48504 * 109.47225 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47007 * 300.00124 * 7 5 3 11 11 C 1.46492 * 120.00101 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46815 * 90.00440 * 11 2 1 13 13 C 1.53051 * 109.45729 * 174.99869 * 12 11 2 14 14 C 1.53190 * 109.30934 * 181.37121 * 13 12 11 15 15 N 1.46927 * 108.77478 * 305.36338 * 14 13 12 16 16 C 1.34780 * 120.62789 * 233.58765 * 15 14 13 17 17 O 1.21557 * 120.00478 * 10.49940 * 16 15 14 18 18 C 1.47794 * 119.99433 * 190.49887 * 16 15 14 19 19 N 1.32812 * 120.07648 * 6.80812 * 18 16 15 20 20 C 1.31677 * 122.01235 * 179.97438 * 19 18 16 21 21 C 1.38390 * 121.69824 * 359.97438 * 20 19 18 22 22 C 1.38862 * 119.13581 * 359.97438 * 21 20 19 23 23 O 1.34433 * 134.63499 * 180.02562 * 22 21 20 24 24 C 1.34446 * 110.85014 * 179.97438 * 23 22 21 25 25 C 1.34308 * 110.16586 * 0.02562 * 24 23 22 26 26 C 1.40209 * 120.06744 * 186.78356 * 18 16 15 27 27 C 1.46929 * 118.73909 * 53.86219 * 15 14 13 28 28 C 1.53042 * 109.44660 * 295.05707 * 12 11 2 29 29 H 1.08996 * 109.47370 * 275.02920 * 1 2 3 30 30 H 1.08996 * 109.47017 * 35.03495 * 1 2 3 31 31 H 1.09001 * 109.46663 * 155.03446 * 1 2 3 32 32 H 0.97000 * 120.00458 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.47658 * 330.00558 * 11 2 1 34 34 H 1.09006 * 109.46998 * 210.00049 * 11 2 1 35 35 H 1.08995 * 109.46028 * 55.02531 * 12 11 2 36 36 H 1.08996 * 109.49406 * 61.41993 * 13 12 11 37 37 H 1.08994 * 109.49439 * 301.32326 * 13 12 11 38 38 H 1.09000 * 109.58378 * 185.57973 * 14 13 12 39 39 H 1.09002 * 109.70710 * 65.22162 * 14 13 12 40 40 H 1.07994 * 119.15030 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.43282 * 179.97438 * 21 20 19 42 42 H 1.08004 * 124.91878 * 179.97438 * 24 23 22 43 43 H 1.08009 * 126.88966 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.58252 * 65.92892 * 27 15 14 45 45 H 1.08997 * 109.58319 * 186.35133 * 27 15 14 46 46 H 1.08999 * 109.49868 * 298.57090 * 28 12 11 47 47 H 1.08994 * 109.49874 * 58.67439 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1560 1.2285 -0.3895 5 6 1.5501 2.3335 0.5006 6 7 0.3802 2.2574 1.0988 7 14 2.4037 3.9858 0.3253 8 1 2.6085 4.2868 -1.1144 9 1 1.5620 5.0452 0.9372 10 1 3.7189 3.9389 1.0131 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7108 -1.4418 13 6 3.3243 -2.9689 -1.4428 14 6 3.6059 -3.3889 -2.8888 15 7 2.3264 -3.5407 -3.5949 16 6 2.0322 -4.6843 -4.2447 17 8 2.7335 -5.6659 -4.0954 18 6 0.8569 -4.7447 -5.1387 19 7 0.1690 -3.6413 -5.4093 20 6 -0.8834 -3.6513 -6.2006 21 6 -1.3333 -4.8159 -6.7976 22 6 -0.6570 -6.0044 -6.5560 23 8 -0.8126 -7.2780 -6.9571 24 6 0.1358 -8.0672 -6.4230 25 6 0.9569 -7.3428 -5.6452 26 6 0.4660 -5.9670 -5.7035 27 6 1.3764 -2.4200 -3.5843 28 6 1.1173 -2.0128 -2.1259 29 1 -0.3634 0.0901 1.0237 30 1 -0.3633 0.8414 -0.5899 31 1 -0.3633 -0.9317 -0.4338 32 1 -0.0386 3.0592 1.4489 33 1 1.6085 -2.0282 0.5146 34 1 3.1500 -1.1380 0.5144 35 1 2.9647 -0.9138 -1.9808 36 1 2.8021 -3.7736 -0.9253 37 1 4.2656 -2.7596 -0.9347 38 1 4.1420 -4.3380 -2.8958 39 1 4.2075 -2.6258 -3.3826 40 1 -1.4089 -2.7267 -6.3887 41 1 -2.1992 -4.8006 -7.4429 42 1 0.2241 -9.1299 -6.5938 43 1 1.8083 -7.7044 -5.0876 44 1 1.7988 -1.5778 -4.1322 45 1 0.4410 -2.7296 -4.0504 46 1 0.6160 -2.8266 -1.6020 47 1 0.4880 -1.1232 -2.1041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713765708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:36 Heat of formation + Delta-G solvation = 52.760245 kcal Electronic energy + Delta-G solvation = -30114.435483 eV Core-core repulsion = 26072.499516 eV Total energy + Delta-G solvation = -4041.935967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.05639 -40.47238 -38.90780 -37.60698 -35.43058 -33.26923 -33.20117 -32.15327 -30.89534 -30.35087 -30.07454 -27.17769 -25.83555 -25.21201 -23.60923 -23.40820 -22.91553 -22.12254 -20.85465 -20.10738 -19.18858 -18.31462 -17.84748 -16.83963 -16.70103 -16.47768 -16.03629 -15.77779 -15.32228 -14.95533 -14.72476 -14.26858 -13.96216 -13.83684 -13.73783 -13.54242 -13.38666 -13.23301 -13.02492 -12.88642 -12.33891 -12.22894 -11.99724 -11.78248 -11.09583 -10.94576 -10.83825 -10.78319 -10.69471 -10.60263 -10.49541 -10.24617 -10.13888 -9.85640 -9.81787 -9.78260 -9.72220 -9.03035 -8.78913 -8.51288 -8.38329 -6.61591 -5.64780 -3.13179 -0.00237 0.77990 1.92299 2.22355 2.55100 2.92146 3.41693 3.46729 3.47486 3.52801 3.81590 3.99972 4.15384 4.49111 4.54412 4.64565 4.83228 4.88176 5.16353 5.24723 5.28781 5.34209 5.37939 5.46257 5.50849 5.54901 5.60046 5.75033 5.81815 5.87625 5.95687 6.02322 6.17612 6.22194 6.28973 6.42242 6.50909 6.53908 6.64543 6.65416 6.78061 6.89206 6.99287 7.09355 7.29792 7.47428 7.50638 7.82263 7.87791 8.09524 8.48727 9.32654 9.95821 10.45884 11.39328 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.002506 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.916863 B =11169.862573 C =11911.645838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.602 5.602 3 C -0.249 4.249 4 H 0.065 0.935 5 C 0.001 3.999 6 N -0.912 5.912 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.158 3.842 12 C -0.110 4.110 13 C -0.126 4.126 14 C 0.111 3.889 15 N -0.582 5.582 16 C 0.568 3.432 17 O -0.539 6.539 18 C 0.143 3.857 19 N -0.449 5.449 20 C 0.106 3.894 21 C -0.136 4.136 22 C 0.081 3.919 23 O -0.189 6.189 24 C 0.002 3.998 25 C -0.175 4.175 26 C -0.135 4.135 27 C 0.074 3.926 28 C -0.123 4.123 29 H 0.026 0.974 30 H 0.041 0.959 31 H 0.000 1.000 32 H 0.251 0.749 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.178 0.822 41 H 0.149 0.851 42 H 0.216 0.784 43 H 0.173 0.827 44 H 0.064 0.936 45 H 0.139 0.861 46 H 0.051 0.949 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -18.708 -16.979 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.379 4.379 4 H 0.083 0.917 5 C -0.197 4.197 6 N -0.557 5.557 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.030 3.970 12 C -0.131 4.131 13 C -0.164 4.164 14 C -0.011 4.011 15 N -0.312 5.312 16 C 0.354 3.646 17 O -0.417 6.417 18 C 0.000 4.000 19 N -0.162 5.162 20 C -0.047 4.047 21 C -0.157 4.157 22 C 0.026 3.974 23 O -0.088 6.088 24 C -0.062 4.062 25 C -0.194 4.194 26 C -0.139 4.139 27 C -0.047 4.047 28 C -0.161 4.161 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.195 0.805 41 H 0.167 0.833 42 H 0.232 0.768 43 H 0.191 0.809 44 H 0.083 0.917 45 H 0.155 0.845 46 H 0.070 0.930 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.228 -18.363 -16.617 24.865 hybrid contribution 0.240 0.328 -0.308 0.510 sum -1.988 -18.035 -16.925 24.813 Atomic orbital electron populations 1.20866 0.82797 0.95285 0.99202 1.43839 1.01750 1.00588 1.86299 1.19126 0.98859 0.86153 1.33775 0.91695 1.25083 0.97493 0.98579 0.98557 1.70044 1.16730 1.27426 1.41530 0.86350 0.78724 0.83863 0.77656 1.21149 1.21718 1.21043 1.20745 0.95848 0.88222 0.92169 1.21871 0.94998 0.95512 1.00716 1.21919 1.00758 0.98811 0.94952 1.21711 0.84401 1.02127 0.92863 1.48035 1.18988 1.14613 1.49610 1.17686 0.83617 0.83215 0.80104 1.90730 1.51386 1.34697 1.64859 1.20817 0.95270 0.87585 0.96311 1.67881 1.07336 1.27474 1.13532 1.22848 0.92776 0.97431 0.91640 1.21198 1.02065 0.88629 1.03790 1.19730 0.96145 0.85242 0.96264 1.83979 1.48093 1.15851 1.60908 1.24284 0.88425 0.96795 0.96700 1.22714 1.03017 0.90287 1.03430 1.20600 0.97417 0.95333 1.00521 1.23132 0.95488 0.87995 0.98110 1.22090 0.98478 1.01527 0.93978 0.95603 0.94018 0.98203 0.93828 0.94963 0.93726 0.91187 0.92023 0.90965 0.89549 0.91384 0.80457 0.83298 0.76772 0.80928 0.91724 0.84506 0.93005 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 7.85 59.85 0.47 4.46 16 2 N -0.60 -14.99 2.75 -181.12 -0.50 -15.48 16 3 C -0.25 -6.82 9.66 -15.06 -0.15 -6.96 16 4 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 5 C 0.00 0.02 5.22 -17.43 -0.09 -0.07 16 6 N -0.91 -26.72 10.49 55.49 0.58 -26.14 16 7 Si 0.90 21.95 29.56 -169.99 -5.02 16.93 16 8 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 C 0.16 3.23 5.14 -4.04 -0.02 3.21 16 12 C -0.11 -1.88 2.36 -90.57 -0.21 -2.09 16 13 C -0.13 -1.82 5.36 -26.61 -0.14 -1.96 16 14 C 0.11 1.54 6.44 -3.71 -0.02 1.51 16 15 N -0.58 -8.52 2.97 -173.64 -0.52 -9.04 16 16 C 0.57 8.61 7.63 -12.35 -0.09 8.52 16 17 O -0.54 -8.98 14.69 5.32 0.08 -8.90 16 18 C 0.14 1.92 6.62 -82.80 -0.55 1.37 16 19 N -0.45 -5.32 6.15 -9.68 -0.06 -5.38 16 20 C 0.11 0.91 11.13 -17.56 -0.20 0.72 16 21 C -0.14 -1.10 10.13 -39.29 -0.40 -1.50 16 22 C 0.08 0.84 7.48 -38.29 -0.29 0.55 16 23 O -0.19 -1.77 10.57 4.97 0.05 -1.71 16 24 C 0.00 0.02 11.97 29.35 0.35 0.37 16 25 C -0.17 -1.80 10.32 -37.78 -0.39 -2.19 16 26 C -0.13 -1.65 6.16 -104.90 -0.65 -2.30 16 27 C 0.07 1.07 5.87 -3.49 -0.02 1.05 16 28 C -0.12 -2.01 4.42 -26.39 -0.12 -2.12 16 29 H 0.03 0.70 7.34 -51.93 -0.38 0.31 16 30 H 0.04 1.09 7.28 -51.93 -0.38 0.72 16 31 H 0.00 -0.01 6.19 -51.93 -0.32 -0.33 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.19 7.01 -51.93 -0.36 0.83 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.22 0.61 8.06 -52.48 -0.42 0.18 16 43 H 0.17 1.78 7.32 -52.48 -0.38 1.40 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.14 1.88 4.11 -80.42 -0.33 1.55 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.09 1.61 5.87 -51.93 -0.30 1.30 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -33.18 372.67 -8.93 -42.11 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.65 Total: -0.56 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.51 Total: 2.56 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.49 Total: -56.04 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.13 Total: -10.62 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.18 -8.93 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713765708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.867 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds