Wall clock time and date at job start Wed Apr 1 2020 02:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36934 * 119.99626 * 2 1 4 4 H 1.07995 * 119.99904 * 204.61132 * 3 2 1 5 5 C 1.38815 * 120.00113 * 24.60872 * 3 2 1 6 6 N 1.31615 * 120.00087 * 6.94131 * 5 3 2 7 7 Si 1.86802 * 119.99993 * 186.94226 * 5 3 2 8 8 H 1.48499 * 109.47015 * 60.00133 * 7 5 3 9 9 H 1.48504 * 109.47225 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47007 * 300.00124 * 7 5 3 11 11 C 1.46492 * 120.00101 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46815 * 90.00440 * 11 2 1 13 13 C 1.53051 * 109.45729 * 174.99869 * 12 11 2 14 14 C 1.53190 * 109.30934 * 181.37121 * 13 12 11 15 15 N 1.46927 * 108.77478 * 305.36338 * 14 13 12 16 16 C 1.34780 * 120.62789 * 233.58765 * 15 14 13 17 17 O 1.21557 * 120.00478 * 10.49940 * 16 15 14 18 18 C 1.47794 * 119.99433 * 190.49887 * 16 15 14 19 19 N 1.32812 * 120.07648 * 6.80812 * 18 16 15 20 20 C 1.31677 * 122.01235 * 179.97438 * 19 18 16 21 21 C 1.38390 * 121.69824 * 359.97438 * 20 19 18 22 22 C 1.38862 * 119.13581 * 359.97438 * 21 20 19 23 23 O 1.34433 * 134.63499 * 180.02562 * 22 21 20 24 24 C 1.34446 * 110.85014 * 179.97438 * 23 22 21 25 25 C 1.34308 * 110.16586 * 0.02562 * 24 23 22 26 26 C 1.40209 * 120.06744 * 186.78356 * 18 16 15 27 27 C 1.46929 * 118.73909 * 53.86219 * 15 14 13 28 28 C 1.53042 * 109.44660 * 295.05707 * 12 11 2 29 29 H 1.08996 * 109.47370 * 275.02920 * 1 2 3 30 30 H 1.08996 * 109.47017 * 35.03495 * 1 2 3 31 31 H 1.09001 * 109.46663 * 155.03446 * 1 2 3 32 32 H 0.97000 * 120.00458 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.47658 * 330.00558 * 11 2 1 34 34 H 1.09006 * 109.46998 * 210.00049 * 11 2 1 35 35 H 1.08995 * 109.46028 * 55.02531 * 12 11 2 36 36 H 1.08996 * 109.49406 * 61.41993 * 13 12 11 37 37 H 1.08994 * 109.49439 * 301.32326 * 13 12 11 38 38 H 1.09000 * 109.58378 * 185.57973 * 14 13 12 39 39 H 1.09002 * 109.70710 * 65.22162 * 14 13 12 40 40 H 1.07994 * 119.15030 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.43282 * 179.97438 * 21 20 19 42 42 H 1.08004 * 124.91878 * 179.97438 * 24 23 22 43 43 H 1.08009 * 126.88966 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.58252 * 65.92892 * 27 15 14 45 45 H 1.08997 * 109.58319 * 186.35133 * 27 15 14 46 46 H 1.08999 * 109.49868 * 298.57090 * 28 12 11 47 47 H 1.08994 * 109.49874 * 58.67439 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1560 1.2285 -0.3895 5 6 1.5501 2.3335 0.5006 6 7 0.3802 2.2574 1.0988 7 14 2.4037 3.9858 0.3253 8 1 2.6085 4.2868 -1.1144 9 1 1.5620 5.0452 0.9372 10 1 3.7189 3.9389 1.0131 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7108 -1.4418 13 6 3.3243 -2.9689 -1.4428 14 6 3.6059 -3.3889 -2.8888 15 7 2.3264 -3.5407 -3.5949 16 6 2.0322 -4.6843 -4.2447 17 8 2.7335 -5.6659 -4.0954 18 6 0.8569 -4.7447 -5.1387 19 7 0.1690 -3.6413 -5.4093 20 6 -0.8834 -3.6513 -6.2006 21 6 -1.3333 -4.8159 -6.7976 22 6 -0.6570 -6.0044 -6.5560 23 8 -0.8126 -7.2780 -6.9571 24 6 0.1358 -8.0672 -6.4230 25 6 0.9569 -7.3428 -5.6452 26 6 0.4660 -5.9670 -5.7035 27 6 1.3764 -2.4200 -3.5843 28 6 1.1173 -2.0128 -2.1259 29 1 -0.3634 0.0901 1.0237 30 1 -0.3633 0.8414 -0.5899 31 1 -0.3633 -0.9317 -0.4338 32 1 -0.0386 3.0592 1.4489 33 1 1.6085 -2.0282 0.5146 34 1 3.1500 -1.1380 0.5144 35 1 2.9647 -0.9138 -1.9808 36 1 2.8021 -3.7736 -0.9253 37 1 4.2656 -2.7596 -0.9347 38 1 4.1420 -4.3380 -2.8958 39 1 4.2075 -2.6258 -3.3826 40 1 -1.4089 -2.7267 -6.3887 41 1 -2.1992 -4.8006 -7.4429 42 1 0.2241 -9.1299 -6.5938 43 1 1.8083 -7.7044 -5.0876 44 1 1.7988 -1.5778 -4.1322 45 1 0.4410 -2.7296 -4.0504 46 1 0.6160 -2.8266 -1.6020 47 1 0.4880 -1.1232 -2.1041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713765708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:35 Heat of formation + Delta-G solvation = 33.543657 kcal Electronic energy + Delta-G solvation = -30115.268777 eV Core-core repulsion = 26072.499516 eV Total energy + Delta-G solvation = -4042.769261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.76749 -41.50405 -39.82663 -38.94712 -37.12393 -34.63709 -34.00437 -33.25212 -32.36502 -31.75708 -30.87989 -28.69922 -27.80285 -26.29596 -24.76061 -24.51117 -23.89182 -23.16198 -22.34331 -21.47378 -20.34072 -19.06008 -18.78283 -18.52340 -17.70657 -17.43342 -17.12191 -16.86592 -16.50980 -16.38240 -15.74226 -15.50220 -15.35010 -15.28547 -15.06170 -14.76119 -14.45020 -14.38989 -14.18001 -13.89512 -13.74239 -13.61208 -13.31569 -12.95852 -12.81538 -12.70397 -12.52466 -12.36275 -12.14706 -12.00602 -11.90342 -11.85968 -11.44401 -11.41712 -11.32759 -11.23263 -10.61556 -10.58241 -10.03870 -9.73918 -9.37610 -8.65503 -7.76618 -5.27406 -0.79145 0.03678 1.22261 1.48214 1.50099 1.56534 1.57693 1.59137 1.87319 2.53922 2.66567 2.96137 3.22211 3.36096 3.48128 3.69471 3.76124 3.93565 4.00215 4.04318 4.11422 4.18716 4.26611 4.28159 4.43605 4.57368 4.61655 4.62606 4.73260 4.78381 4.85020 4.87731 4.91065 5.01938 5.07105 5.09574 5.13635 5.19408 5.25452 5.30872 5.42905 5.46646 5.63178 5.68097 5.72055 5.79036 5.87837 6.29760 6.39252 6.57711 7.00014 7.21807 7.94121 8.38785 9.25586 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.002506 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.916863 B =11169.862573 C =11911.645838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.616 5.616 3 C -0.255 4.255 4 H 0.068 0.932 5 C -0.056 4.056 6 N -0.943 5.943 7 Si 0.968 3.032 8 H -0.278 1.278 9 H -0.296 1.296 10 H -0.277 1.277 11 C 0.156 3.844 12 C -0.097 4.097 13 C -0.115 4.115 14 C 0.112 3.888 15 N -0.586 5.586 16 C 0.564 3.436 17 O -0.564 6.564 18 C 0.106 3.894 19 N -0.462 5.462 20 C 0.099 3.901 21 C -0.113 4.113 22 C 0.064 3.936 23 O -0.189 6.189 24 C 0.038 3.962 25 C -0.217 4.217 26 C -0.152 4.152 27 C 0.085 3.915 28 C -0.115 4.115 29 H -0.004 1.004 30 H 0.016 0.984 31 H 0.031 0.969 32 H 0.246 0.754 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.214 0.786 41 H 0.188 0.812 42 H 0.264 0.736 43 H 0.164 0.836 44 H 0.063 0.937 45 H 0.150 0.850 46 H 0.049 0.951 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 -19.808 -19.182 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.340 5.340 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.250 4.250 6 N -0.590 5.590 7 Si 0.796 3.204 8 H -0.204 1.204 9 H -0.222 1.222 10 H -0.203 1.203 11 C 0.030 3.970 12 C -0.118 4.118 13 C -0.154 4.154 14 C -0.010 4.010 15 N -0.317 5.317 16 C 0.351 3.649 17 O -0.443 6.443 18 C -0.035 4.035 19 N -0.176 5.176 20 C -0.054 4.054 21 C -0.133 4.133 22 C 0.009 3.991 23 O -0.089 6.089 24 C -0.026 4.026 25 C -0.237 4.237 26 C -0.156 4.156 27 C -0.037 4.037 28 C -0.154 4.154 29 H 0.014 0.986 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.230 0.770 41 H 0.205 0.795 42 H 0.279 0.721 43 H 0.181 0.819 44 H 0.081 0.919 45 H 0.166 0.834 46 H 0.068 0.932 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.735 -19.488 -18.830 27.237 hybrid contribution 0.351 0.537 0.296 0.706 sum -2.384 -18.951 -18.534 26.614 Atomic orbital electron populations 1.20575 0.82935 0.95774 0.97091 1.44060 1.01984 1.01515 1.86423 1.19451 0.99021 0.87220 1.32859 0.91377 1.25843 0.98307 1.01958 0.98897 1.70227 1.18114 1.27813 1.42849 0.85329 0.77670 0.79592 0.77766 1.20364 1.22214 1.20321 1.20897 0.95176 0.86589 0.94309 1.21635 0.95908 0.96260 0.98011 1.21815 1.00735 0.97121 0.95712 1.21712 0.84492 1.02419 0.92334 1.48087 1.19125 1.14624 1.49836 1.18049 0.84034 0.82752 0.80034 1.90696 1.52443 1.35370 1.65790 1.20532 0.96069 0.88757 0.98161 1.67648 1.08279 1.27206 1.14438 1.23472 0.91916 0.99160 0.90885 1.21671 1.01947 0.87317 1.02337 1.20066 0.96163 0.86282 0.96563 1.84012 1.48410 1.15591 1.60849 1.25118 0.85929 0.98046 0.93480 1.22775 1.04549 0.90363 1.06045 1.20902 0.98299 0.95691 1.00722 1.23059 0.96236 0.87891 0.96479 1.21971 0.97521 1.00466 0.95406 0.98603 0.96494 0.95029 0.94437 0.94403 0.94102 0.92621 0.92239 0.89603 0.89462 0.90477 0.76988 0.79488 0.72082 0.81890 0.91900 0.83406 0.93224 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.06 7.85 127.77 1.00 10.06 16 2 N -0.62 -31.03 2.75 -726.93 -2.00 -33.02 16 3 C -0.26 -14.05 9.66 84.03 0.81 -13.24 16 4 H 0.07 3.64 7.84 -2.91 -0.02 3.61 16 5 C -0.06 -3.15 5.22 84.86 0.44 -2.70 16 6 N -0.94 -56.47 10.49 21.65 0.23 -56.25 16 7 Si 0.97 45.45 29.56 68.60 2.03 47.47 16 8 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 9 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 C 0.16 6.39 5.14 86.38 0.44 6.83 16 12 C -0.10 -3.30 2.36 -10.76 -0.03 -3.33 16 13 C -0.12 -3.25 5.36 30.67 0.16 -3.08 16 14 C 0.11 3.06 6.44 86.36 0.56 3.62 16 15 N -0.59 -17.12 2.97 -821.54 -2.44 -19.56 16 16 C 0.56 17.37 7.63 86.77 0.66 18.03 16 17 O -0.56 -19.32 14.69 -3.89 -0.06 -19.38 16 18 C 0.11 2.84 6.62 42.00 0.28 3.11 16 19 N -0.46 -10.48 6.15 -184.54 -1.13 -11.62 16 20 C 0.10 1.46 11.13 84.75 0.94 2.40 16 21 C -0.11 -1.47 10.13 22.46 0.23 -1.24 16 22 C 0.06 1.20 7.48 23.11 0.17 1.37 16 23 O -0.19 -3.02 10.57 -5.15 -0.05 -3.07 16 24 C 0.04 0.48 11.97 66.92 0.80 1.28 16 25 C -0.22 -4.40 10.32 23.44 0.24 -4.16 16 26 C -0.15 -3.65 6.16 -20.05 -0.12 -3.78 16 27 C 0.09 2.42 5.87 86.51 0.51 2.93 16 28 C -0.12 -3.75 4.42 30.82 0.14 -3.61 16 29 H 0.00 -0.24 7.34 -2.39 -0.02 -0.26 16 30 H 0.02 0.89 7.28 -2.39 -0.02 0.88 16 31 H 0.03 1.34 6.19 -2.39 -0.01 1.33 16 32 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.04 1.50 8.07 -2.39 -0.02 1.48 16 34 H 0.04 1.68 8.04 -2.38 -0.02 1.67 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.09 2.39 7.01 -2.39 -0.02 2.38 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.21 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 42 H 0.26 0.40 8.06 -2.91 -0.02 0.37 16 43 H 0.16 3.51 7.32 -2.91 -0.02 3.49 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.15 3.98 4.11 -58.64 -0.24 3.74 16 46 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.07 2.50 5.87 -2.39 -0.01 2.48 16 Total: -1.00 -74.20 372.67 4.58 -69.62 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.76 Total: 11.31 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 7.25 Total: 14.50 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -5.34 Total: -120.45 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.11 Total: -22.45 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.20 4.58 -69.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713765708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.159 kcal (2) G-P(sol) polarization free energy of solvation -74.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds