Wall clock time and date at job start Wed Apr 1 2020 02:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00559 * 2 1 4 4 C 1.52999 * 109.47452 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46856 * 65.00332 * 4 3 2 6 6 C 1.46495 * 120.00199 * 269.99840 * 5 4 3 7 7 C 1.50697 * 109.47141 * 275.76863 * 6 5 4 8 8 H 1.07993 * 120.00202 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99883 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00383 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99708 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47311 * 90.00041 * 11 9 7 13 13 H 1.48500 * 109.46844 * 210.00203 * 11 9 7 14 14 H 1.48496 * 109.47043 * 329.99754 * 11 9 7 15 15 C 1.34776 * 119.99917 * 90.00217 * 5 4 3 16 16 O 1.21551 * 120.00280 * 4.97491 * 15 5 4 17 17 C 1.47848 * 120.00319 * 184.97623 * 15 5 4 18 18 C 1.39577 * 120.14197 * 311.75904 * 17 15 5 19 19 C 1.37963 * 119.85196 * 179.71659 * 18 17 15 20 20 C 1.38359 * 120.14356 * 0.28227 * 19 18 17 21 21 C 1.50698 * 119.85232 * 179.97438 * 20 19 18 22 22 N 1.46504 * 109.47432 * 89.99689 * 21 20 19 23 23 C 1.34945 * 126.03908 * 124.71461 * 22 21 20 24 24 C 1.35320 * 107.74549 * 179.84139 * 23 22 21 25 25 C 1.39871 * 107.91944 * 0.42482 * 24 23 22 26 26 N 1.30842 * 108.20067 * 359.73529 * 25 24 23 27 27 C 1.38356 * 120.29495 * 359.97438 * 20 19 18 28 28 C 1.37968 * 120.14537 * 359.97438 * 27 20 19 29 29 H 1.09000 * 109.47668 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46880 * 299.99661 * 1 2 3 31 31 H 1.08996 * 109.47392 * 59.99172 * 1 2 3 32 32 H 1.09008 * 109.46737 * 60.00241 * 3 2 1 33 33 H 1.09001 * 109.47535 * 300.00881 * 3 2 1 34 34 H 1.08995 * 109.47357 * 305.00124 * 4 3 2 35 35 H 1.08999 * 109.46857 * 185.00106 * 4 3 2 36 36 H 1.08997 * 109.47120 * 35.77103 * 6 5 4 37 37 H 1.09002 * 109.47398 * 155.77142 * 6 5 4 38 38 H 0.96995 * 120.00252 * 179.97438 * 10 9 7 39 39 H 1.07997 * 120.07535 * 359.97438 * 18 17 15 40 40 H 1.07997 * 119.92364 * 180.30046 * 19 18 17 41 41 H 1.09002 * 109.47250 * 209.99707 * 21 20 19 42 42 H 1.08996 * 109.47264 * 329.99446 * 21 20 19 43 43 H 1.08001 * 126.12414 * 359.97438 * 23 22 21 44 44 H 1.07996 * 126.03634 * 180.16431 * 24 23 22 45 45 H 1.07995 * 125.89552 * 179.71890 * 25 24 23 46 46 H 1.07998 * 119.93253 * 180.02562 * 27 20 19 47 47 H 1.07995 * 120.07273 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5643 -1.2528 6 6 4.1051 -0.8921 -1.3429 7 6 5.4518 -1.3105 -0.8115 8 1 6.1423 -0.5661 -0.4438 9 6 5.8023 -2.6440 -0.7948 10 7 4.9613 -3.5507 -1.2420 11 14 7.4713 -3.1627 -0.1353 12 1 7.3672 -3.4276 1.3221 13 1 7.9173 -4.3959 -0.8321 14 1 8.4563 -2.0768 -0.3720 15 6 4.2615 1.3337 -2.3218 16 8 4.2418 2.5449 -2.2216 17 6 4.5989 0.7046 -3.6164 18 6 5.5387 -0.3260 -3.6711 19 6 5.8447 -0.9128 -4.8816 20 6 5.2267 -0.4779 -6.0405 21 6 5.5664 -1.1232 -7.3593 22 7 4.6673 -2.2556 -7.5950 23 6 3.8854 -2.4361 -8.6799 24 6 3.2142 -3.5996 -8.5156 25 6 3.5917 -4.1439 -7.2837 26 7 4.4628 -3.3391 -6.7310 27 6 4.2983 0.5468 -5.9941 28 6 3.9823 1.1415 -4.7899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8515 0.5681 0.8409 35 1 3.9786 2.1763 0.0889 36 1 3.3192 -1.3639 -0.7532 37 1 4.0134 -1.2013 -2.3841 38 1 5.2080 -4.4887 -1.2306 39 1 6.0220 -0.6662 -2.7672 40 1 6.5681 -1.7136 -4.9245 41 1 5.4503 -0.3940 -8.1612 42 1 6.5973 -1.4765 -7.3361 43 1 3.8106 -1.7722 -9.5285 44 1 2.5083 -4.0295 -9.2107 45 1 3.2270 -5.0686 -6.8616 46 1 3.8191 0.8814 -6.9023 47 1 3.2571 1.9409 -4.7550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:36 Heat of formation + Delta-G solvation = 34.694606 kcal Electronic energy + Delta-G solvation = -30264.349425 eV Core-core repulsion = 26221.630073 eV Total energy + Delta-G solvation = -4042.719352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 11.18 seconds Orbital eigenvalues (eV) -40.97467 -39.73920 -38.16972 -37.26187 -34.97775 -33.88451 -32.64163 -30.94522 -30.57318 -29.82985 -29.30315 -27.14993 -26.48348 -25.74098 -23.16426 -22.86332 -22.24112 -21.57247 -20.87511 -20.35510 -18.81103 -17.18478 -16.84222 -16.51892 -16.11405 -15.91804 -15.62423 -15.31458 -14.96186 -14.56829 -14.49581 -14.26676 -14.01769 -13.90923 -13.60732 -13.43088 -13.02395 -12.82754 -12.65417 -12.35650 -12.19294 -12.07239 -11.92751 -11.68192 -11.54423 -11.46097 -11.23299 -10.91639 -10.85562 -10.59371 -10.43147 -10.37515 -10.10334 -9.71234 -9.39768 -9.28182 -9.11259 -8.58558 -8.51973 -8.41959 -8.21888 -7.69631 -6.12947 -4.20951 1.31547 1.89753 2.07538 2.74309 3.02961 3.24673 3.32546 3.33905 3.42079 3.86548 4.15799 4.28590 4.39807 4.53250 4.83614 4.87677 5.15297 5.18623 5.20712 5.26111 5.39499 5.41663 5.48069 5.51298 5.65729 5.67164 5.68137 5.71213 5.86075 5.87401 5.90074 6.06050 6.08263 6.12259 6.31261 6.37999 6.52294 6.71042 6.79818 6.85983 6.98069 7.03443 7.13146 7.38983 7.43964 7.50119 7.61192 7.82414 7.91077 8.11496 8.36288 8.80482 8.98022 9.44273 10.92461 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008162 B = 0.004156 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.510498 B = 6736.072441 C = 7985.126968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.578 5.578 6 C 0.231 3.769 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.072 3.928 10 N -0.875 5.875 11 Si 0.890 3.110 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.555 3.445 16 O -0.575 6.575 17 C -0.107 4.107 18 C -0.068 4.068 19 C -0.091 4.091 20 C -0.105 4.105 21 C 0.177 3.823 22 N -0.366 5.366 23 C 0.045 3.955 24 C -0.278 4.278 25 C 0.037 3.963 26 N -0.270 5.270 27 C -0.121 4.121 28 C -0.083 4.083 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.266 0.734 39 H 0.172 0.828 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.169 0.831 44 H 0.143 0.857 45 H 0.180 0.820 46 H 0.117 0.883 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 4.016 -10.862 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.307 5.307 6 C 0.112 3.888 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.133 4.133 10 N -0.511 5.511 11 Si 0.717 3.283 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.343 3.657 16 O -0.457 6.457 17 C -0.110 4.110 18 C -0.086 4.086 19 C -0.109 4.109 20 C -0.106 4.106 21 C 0.056 3.944 22 N -0.149 5.149 23 C -0.101 4.101 24 C -0.308 4.308 25 C -0.149 4.149 26 N -0.091 5.091 27 C -0.139 4.139 28 C -0.102 4.102 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.189 0.811 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.186 0.814 44 H 0.160 0.840 45 H 0.197 0.803 46 H 0.135 0.865 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.467 4.556 -9.789 11.340 hybrid contribution -0.099 -0.467 -0.362 0.599 sum -3.566 4.089 -10.152 11.510 Atomic orbital electron populations 1.22679 0.82209 1.02417 0.99105 1.88074 1.18625 1.27332 1.95176 1.23024 0.95264 0.84999 0.99679 1.21354 0.91043 0.99724 0.88184 1.48110 1.62684 1.10194 1.09703 1.19713 0.97476 0.72448 0.99167 1.21431 1.01178 0.92464 1.43307 0.92079 1.24922 0.97189 0.96357 0.94877 1.69935 1.35241 1.01488 1.44460 0.86628 0.84122 0.78339 0.79230 1.20491 1.20992 1.19706 1.18395 0.76817 0.86160 0.84295 1.90664 1.55560 1.14130 1.85364 1.19966 0.99561 0.98103 0.93406 1.22471 0.94758 0.91207 1.00175 1.20968 0.99804 0.98693 0.91485 1.19802 0.98985 0.97335 0.94453 1.20583 0.92955 0.84670 0.96154 1.48881 1.33683 1.18090 1.14224 1.22511 0.95268 0.99287 0.93067 1.21460 1.09459 0.98890 1.00978 1.23931 0.96729 0.99868 0.94393 1.77610 1.19972 0.96406 1.15112 1.20690 0.98396 0.97381 0.97466 1.20968 0.99093 0.98875 0.91266 0.89853 0.94715 0.94715 0.93119 0.93587 0.89144 0.89323 0.93355 0.93729 0.92437 0.81126 0.85804 0.88122 0.89012 0.81405 0.83967 0.80308 0.86508 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.92 9.45 -35.23 -0.33 -7.25 16 3 C 0.05 0.81 6.28 37.16 0.23 1.05 16 4 C 0.12 2.29 5.87 -4.04 -0.02 2.27 16 5 N -0.58 -12.71 2.42 -176.19 -0.43 -13.14 16 6 C 0.23 5.69 4.52 -5.20 -0.02 5.67 16 7 C -0.55 -14.02 6.84 -34.44 -0.24 -14.25 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 10 N -0.87 -24.19 13.29 55.43 0.74 -23.46 16 11 Si 0.89 20.40 29.54 -169.99 -5.02 15.37 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.55 12.27 7.24 -12.33 -0.09 12.18 16 16 O -0.57 -13.36 16.57 5.32 0.09 -13.28 16 17 C -0.11 -2.21 4.95 -104.97 -0.52 -2.72 16 18 C -0.07 -1.42 7.52 -39.18 -0.29 -1.71 16 19 C -0.09 -1.65 9.68 -39.64 -0.38 -2.04 16 20 C -0.10 -1.61 5.32 -104.54 -0.56 -2.17 16 21 C 0.18 2.11 6.63 -5.19 -0.03 2.07 16 22 N -0.37 -5.11 3.67 -62.54 -0.23 -5.34 16 23 C 0.04 0.51 11.45 -17.22 -0.20 0.31 16 24 C -0.28 -3.32 10.80 -40.01 -0.43 -3.76 16 25 C 0.04 0.54 12.03 -17.36 -0.21 0.33 16 26 N -0.27 -4.65 12.41 30.62 0.38 -4.27 16 27 C -0.12 -1.83 9.68 -39.64 -0.38 -2.21 16 28 C -0.08 -1.47 9.72 -39.18 -0.38 -1.85 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.73 8.07 -51.93 -0.42 1.31 16 35 H 0.09 1.60 7.36 -51.93 -0.38 1.22 16 36 H 0.05 1.30 7.03 -51.93 -0.37 0.93 16 37 H 0.04 1.17 5.40 -51.93 -0.28 0.89 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.17 3.95 4.74 -52.49 -0.25 3.70 16 40 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 41 H 0.10 0.83 8.01 -51.93 -0.42 0.41 16 42 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 43 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -32.66 397.54 -8.06 -40.72 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.73 Total: 8.14 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.52 Total: -3.49 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.46 Total: -46.20 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.24 Total: -20.53 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.66 -8.06 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.415 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.18 seconds