Wall clock time and date at job start Wed Apr 1 2020 01:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 116.99968 * 2 1 4 4 C 1.38808 * 120.01677 * 0.02562 * 3 2 1 5 5 C 1.38169 * 120.08006 * 179.69759 * 4 3 2 6 6 C 1.38170 * 120.12735 * 0.25377 * 5 4 3 7 7 C 1.38878 * 120.03731 * 0.02562 * 6 5 4 8 8 N 1.39920 * 120.03788 * 179.97438 * 7 6 5 9 9 C 1.46765 * 124.35291 * 354.27034 * 8 7 6 10 10 C 1.54484 * 105.47565 * 162.98268 * 9 8 7 11 11 H 1.08996 * 110.96767 * 267.30035 * 10 9 8 12 12 N 1.46896 * 110.97053 * 143.53036 * 10 9 8 13 13 C 1.46897 * 110.99944 * 154.99730 * 12 10 9 14 14 C 1.52996 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47432 * 305.00781 * 14 13 12 16 16 C 1.47202 * 109.46999 * 65.00217 * 14 13 12 17 17 N 9.09583 * 143.65114 * 10.22841 * 5 1 2 18 18 C 1.52998 * 109.47294 * 185.00390 * 14 13 12 19 19 C 1.50708 * 109.47293 * 175.00462 * 18 14 13 20 20 H 1.08001 * 119.99806 * 359.97438 * 19 18 14 21 21 C 1.37869 * 120.00183 * 179.97438 * 19 18 14 22 22 N 1.31517 * 119.99773 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00058 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47067 * 90.00280 * 23 21 19 25 25 H 1.48503 * 109.47365 * 210.00092 * 23 21 19 26 26 H 1.48500 * 109.47590 * 330.00512 * 23 21 19 27 27 C 1.54636 * 101.76351 * 25.41622 * 10 9 8 28 28 C 1.34424 * 124.34873 * 173.96510 * 8 7 6 29 29 O 1.21288 * 124.93964 * 0.39675 * 28 8 7 30 30 C 1.38579 * 120.02323 * 180.22625 * 3 2 1 31 31 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47150 * 299.99617 * 1 2 3 33 33 H 1.09002 * 109.47355 * 59.99754 * 1 2 3 34 34 H 1.08002 * 119.96278 * 359.97438 * 4 3 2 35 35 H 1.08006 * 119.93574 * 180.27718 * 5 4 3 36 36 H 1.08003 * 119.97933 * 180.02562 * 6 5 4 37 37 H 1.08999 * 110.24365 * 281.98099 * 9 8 7 38 38 H 1.08996 * 110.24217 * 43.89564 * 9 8 7 39 39 H 1.00903 * 110.99653 * 31.04930 * 12 10 9 40 40 H 1.08991 * 109.47345 * 300.00691 * 13 12 10 41 41 H 1.09006 * 109.46494 * 60.00658 * 13 12 10 42 42 H 1.08996 * 109.47247 * 294.99793 * 18 14 13 43 43 H 1.08992 * 109.47458 * 55.00601 * 18 14 13 44 44 H 0.97002 * 119.99670 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.48510 * 93.88030 * 27 10 9 46 46 H 1.08997 * 110.48633 * 216.52735 * 27 10 9 47 47 H 1.08005 * 120.06287 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9162 3.6071 0.0068 6 6 3.2957 3.6840 0.0074 7 6 4.0568 2.5223 0.0010 8 7 5.4538 2.6002 0.0009 9 6 6.2136 3.8507 -0.1137 10 6 7.6427 3.5099 0.3639 11 1 7.7573 3.7142 1.4284 12 7 8.6472 4.2400 -0.4208 13 6 9.8906 4.4093 0.3429 14 6 10.9100 5.1727 -0.5048 15 1 11.0503 4.6580 -1.4554 16 6 10.4172 6.5373 -0.7540 17 7 10.0385 7.5896 -0.9429 18 6 12.2445 5.2405 0.2404 19 6 13.2816 5.8837 -0.6439 20 1 13.0156 6.2110 -1.6381 21 6 14.5699 6.0544 -0.1836 22 7 14.8940 5.6553 1.0269 23 14 15.8556 6.8510 -1.2799 24 1 15.8487 8.3202 -1.0638 25 1 17.1966 6.3078 -0.9455 26 1 15.5435 6.5585 -2.7020 27 6 7.7160 1.9915 0.0807 28 6 6.2726 1.5398 0.1118 29 8 5.9072 0.3882 0.2182 30 6 3.4298 1.2840 -0.0047 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 0.2118 2.3184 0.0005 35 1 1.3259 4.5115 0.0118 36 1 3.7825 4.6481 0.0127 37 1 6.2324 4.1868 -1.1503 38 1 5.7746 4.6184 0.5234 39 1 8.2878 5.1312 -0.7286 40 1 9.6837 4.9701 1.2543 41 1 10.2937 3.4303 0.6023 42 1 12.1241 5.8316 1.1482 43 1 12.5656 4.2326 0.5030 44 1 15.8005 5.7751 1.3506 45 1 8.1566 1.8070 -0.8990 46 1 8.2878 1.4856 0.8586 47 1 4.0194 0.3791 -0.0089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552861621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:08 Heat of formation + Delta-G solvation = -13.065786 kcal Electronic energy + Delta-G solvation = -28315.148013 eV Core-core repulsion = 24270.357615 eV Total energy + Delta-G solvation = -4044.790398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.45657 -40.06841 -37.93513 -37.69910 -36.65290 -35.03471 -33.75952 -32.49110 -31.16137 -30.65430 -28.79872 -28.10155 -27.47046 -26.10807 -23.51691 -23.15194 -22.50925 -21.91703 -21.04375 -20.18113 -18.46898 -17.34938 -16.78380 -16.76411 -16.64163 -16.55447 -16.19878 -16.05774 -15.48072 -15.30407 -14.81022 -14.54591 -14.17771 -13.93172 -13.86716 -13.73843 -13.53320 -13.26572 -12.98617 -12.88974 -12.77759 -12.63368 -12.18197 -12.13214 -11.96223 -11.74357 -11.60716 -11.48350 -11.40020 -11.32170 -11.08788 -10.82970 -10.59297 -10.44773 -10.34458 -9.89551 -9.63141 -9.29873 -8.69904 -8.67462 -8.50133 -8.22915 -6.14550 -4.18061 0.92403 1.12717 2.30792 2.33314 3.02675 3.26687 3.33720 3.36559 3.45964 3.50511 3.51315 3.73492 3.97764 4.15395 4.37177 4.48416 4.63028 4.67331 4.71100 4.73444 4.77002 4.79175 4.88044 4.92722 5.08565 5.09874 5.20806 5.22442 5.23782 5.36478 5.45220 5.54907 5.56812 5.71215 5.82145 5.91889 6.00832 6.06420 6.16582 6.21375 6.43721 6.55758 6.74244 6.80609 7.10334 7.11336 7.36544 7.45052 7.74844 7.80032 8.16779 8.29116 8.86401 9.47967 10.96179 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.029253 B = 0.001744 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.927141 B =16050.297338 C =16728.351443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.154 3.846 4 C -0.237 4.237 5 C -0.052 4.052 6 C -0.196 4.196 7 C 0.208 3.792 8 N -0.558 5.558 9 C 0.094 3.906 10 C 0.076 3.924 11 H 0.077 0.923 12 N -0.677 5.677 13 C 0.066 3.934 14 C 0.006 3.994 15 H 0.113 0.887 16 C 0.239 3.761 17 N -0.474 5.474 18 C 0.032 3.968 19 C -0.528 4.528 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.891 5.891 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.143 4.143 28 C 0.520 3.480 29 O -0.506 6.506 30 C -0.193 4.193 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.345 0.655 40 H 0.041 0.959 41 H 0.096 0.904 42 H 0.024 0.976 43 H 0.041 0.959 44 H 0.263 0.737 45 H 0.126 0.874 46 H 0.109 0.891 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.217 -8.718 -0.053 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.108 3.892 4 C -0.257 4.257 5 C -0.071 4.071 6 C -0.217 4.217 7 C 0.114 3.886 8 N -0.281 5.281 9 C -0.029 4.029 10 C -0.035 4.035 11 H 0.095 0.905 12 N -0.310 5.310 13 C -0.064 4.064 14 C -0.016 4.016 15 H 0.131 0.869 16 C -0.077 4.077 17 N -0.151 5.151 18 C -0.006 4.006 19 C -0.566 4.566 20 H 0.075 0.925 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.184 4.184 28 C 0.310 3.690 29 O -0.381 6.381 30 C -0.214 4.214 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.164 0.836 40 H 0.059 0.941 41 H 0.114 0.886 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.144 0.856 46 H 0.127 0.873 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -27.490 -8.522 -0.489 28.784 hybrid contribution 0.455 1.124 0.147 1.221 sum -27.035 -7.398 -0.342 28.031 Atomic orbital electron populations 1.23072 0.78304 1.03995 1.01368 1.86099 1.21378 1.26844 1.88420 1.18739 0.91683 0.84163 0.94592 1.21186 1.00033 0.92329 1.12131 1.20681 0.93602 0.97106 0.95699 1.20705 0.94017 0.96816 1.10148 1.17399 0.81228 0.93616 0.96388 1.45825 1.03633 1.09603 1.69063 1.22493 0.91063 0.85794 1.03531 1.22398 0.89675 0.94100 0.97354 0.90489 1.60651 1.04439 1.25512 1.40376 1.22200 0.88420 1.01287 0.94468 1.19334 0.96748 0.83123 1.02351 0.86932 1.29249 0.91371 0.95131 0.91983 1.80982 1.11773 1.12139 1.10194 1.19168 0.87121 0.98979 0.95379 1.21129 0.94608 1.40187 1.00712 0.92482 1.24947 0.98578 0.95340 0.95066 1.69934 1.19743 1.46671 1.16559 0.86589 0.80875 0.79588 0.81003 1.20702 1.21069 1.19714 1.22527 0.92906 0.95971 1.06985 1.21290 0.89065 0.84261 0.74363 1.90644 1.80458 1.19023 1.47977 1.20724 0.92223 0.98817 1.09617 0.88186 0.92593 0.92589 0.85487 0.85315 0.85444 0.88940 0.89383 0.83575 0.94103 0.88577 0.95720 0.94096 0.92755 0.85576 0.87304 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.31 10.49 -19.44 -0.20 -3.51 16 3 C 0.15 1.70 6.68 -39.25 -0.26 1.44 16 4 C -0.24 -2.06 9.04 -39.40 -0.36 -2.41 16 5 C -0.05 -0.42 10.03 -39.63 -0.40 -0.82 16 6 C -0.20 -1.77 9.41 -39.37 -0.37 -2.14 16 7 C 0.21 2.32 6.59 -83.72 -0.55 1.77 16 8 N -0.56 -5.77 3.14 -112.29 -0.35 -6.13 16 9 C 0.09 0.73 5.98 -3.12 -0.02 0.71 16 10 C 0.08 0.63 3.49 -66.08 -0.23 0.40 16 11 H 0.08 0.61 7.83 -51.93 -0.41 0.20 16 12 N -0.68 -6.70 6.33 -105.01 -0.66 -7.36 16 13 C 0.07 0.79 4.98 -3.83 -0.02 0.77 16 14 C 0.01 0.10 2.42 -93.41 -0.23 -0.12 16 15 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 16 C 0.24 4.36 12.97 -20.82 -0.27 4.09 16 17 N -0.47 -9.45 18.53 42.09 0.78 -8.67 16 18 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 19 C -0.53 -13.48 8.60 -34.44 -0.30 -13.78 16 20 H 0.06 1.45 7.59 -52.49 -0.40 1.05 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 23 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.14 -1.30 6.59 -26.74 -0.18 -1.48 16 28 C 0.52 6.09 7.92 -10.86 -0.09 6.01 16 29 O -0.51 -7.57 14.81 5.55 0.08 -7.48 16 30 C -0.19 -2.42 9.22 -39.25 -0.36 -2.78 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 33 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 34 H 0.13 0.79 6.29 -52.49 -0.33 0.46 16 35 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 36 H 0.13 0.90 6.74 -52.48 -0.35 0.55 16 37 H 0.09 0.68 8.01 -51.93 -0.42 0.26 16 38 H 0.09 0.56 7.23 -51.93 -0.38 0.18 16 39 H 0.34 3.45 7.46 -39.29 -0.29 3.16 16 40 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 41 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.13 1.14 8.08 -51.93 -0.42 0.72 16 46 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.16 2.37 5.26 -52.48 -0.28 2.09 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -32.16 394.17 -8.13 -40.29 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.58 Total: 0.23 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.85 Total: -5.04 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.50 Total: -46.21 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.12 Total: -11.00 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.16 -8.13 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552861621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.227 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds