Wall clock time and date at job start Wed Apr 1 2020 02:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48498 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47565 * 300.00148 * 3 2 1 6 6 H 1.48507 * 109.47039 * 60.00513 * 3 2 1 7 7 C 1.38815 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00144 * 164.49467 * 7 2 1 9 9 N 1.36937 * 119.99814 * 344.49253 * 7 2 1 10 10 C 1.47599 * 118.64393 * 331.69899 * 9 7 2 11 11 C 1.53950 * 112.14691 * 222.11485 * 10 9 7 12 12 C 1.50880 * 110.09125 * 40.56082 * 11 10 9 13 13 C 1.52562 * 109.34850 * 268.11330 * 12 11 10 14 14 C 1.47093 * 114.33162 * 85.02683 * 13 12 11 15 15 C 1.44578 * 118.64175 * 151.67813 * 9 7 2 16 16 H 1.08997 * 109.45255 * 209.32130 * 15 9 7 17 17 C 1.53002 * 109.44939 * 329.26650 * 15 9 7 18 18 N 1.46505 * 109.47109 * 304.99738 * 17 15 9 19 19 C 1.34771 * 119.99725 * 180.02562 * 18 17 15 20 20 O 1.21700 * 120.00627 * 359.97438 * 19 18 17 21 21 C 1.46680 * 119.99706 * 180.02562 * 19 18 17 22 22 C 1.40328 * 126.55829 * 359.97438 * 21 19 18 23 23 N 1.31004 * 108.78089 * 180.02562 * 22 21 19 24 24 N 1.39900 * 109.55462 * 359.97438 * 23 22 21 25 25 N 1.40023 * 132.51795 * 180.02562 * 24 23 22 26 26 C 1.30834 * 120.65835 * 179.97438 * 25 24 23 27 27 C 1.39735 * 120.97675 * 0.02562 * 26 25 24 28 28 C 1.36553 * 119.93779 * 359.97438 * 27 26 25 29 29 C 1.36757 * 107.87445 * 0.02562 * 24 23 22 30 30 H 0.97008 * 119.99626 * 359.97438 * 1 2 3 31 31 H 1.09002 * 108.94649 * 342.79963 * 10 9 7 32 32 H 1.08997 * 108.94963 * 101.51542 * 10 9 7 33 33 H 1.08998 * 109.36376 * 160.75191 * 11 10 9 34 34 H 1.08994 * 109.36751 * 280.49718 * 11 10 9 35 35 H 1.09000 * 109.49025 * 28.07804 * 12 11 10 36 36 H 1.09007 * 109.48988 * 148.12505 * 12 11 10 37 37 H 1.08997 * 108.51192 * 206.28340 * 13 12 11 38 38 H 1.09003 * 108.51149 * 323.93109 * 13 12 11 39 39 H 1.08998 * 109.32797 * 176.93076 * 14 13 12 40 40 H 1.09007 * 109.32885 * 57.45088 * 14 13 12 41 41 H 1.09004 * 109.47267 * 184.99776 * 17 15 9 42 42 H 1.08997 * 109.47149 * 64.99923 * 17 15 9 43 43 H 0.96999 * 119.99371 * 0.02562 * 18 17 15 44 44 H 1.08001 * 125.61070 * 0.02765 * 22 21 19 45 45 H 1.08003 * 119.51026 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.02542 * 179.72096 * 27 26 25 47 47 H 1.08006 * 120.44524 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2506 9 7 1.3628 -2.3666 0.3160 10 6 0.2008 -2.3058 1.2241 11 6 0.2094 -3.4492 2.2550 12 6 1.6117 -3.6796 2.7618 13 6 2.2912 -4.7421 1.9034 14 6 2.9175 -4.2221 0.6783 15 6 1.8455 -3.6048 -0.2534 16 1 1.0150 -4.3022 -0.3626 17 6 2.4620 -3.3280 -1.6261 18 7 1.4836 -2.6385 -2.4709 19 6 1.8078 -2.2921 -3.7323 20 8 2.9135 -2.5516 -4.1696 21 6 0.8284 -1.6013 -4.5779 22 6 -0.4776 -1.2362 -4.2168 23 7 -1.0454 -0.6390 -5.2352 24 7 -0.1466 -0.5830 -6.3059 25 7 -0.2487 -0.0602 -7.6008 26 6 0.7590 -0.1348 -8.4318 27 6 1.9614 -0.7369 -8.0519 28 6 2.0962 -1.2574 -6.7966 29 6 1.0185 -1.1778 -5.9073 30 1 -0.4850 0.8401 0.0004 31 1 0.2143 -1.3526 1.7527 32 1 -0.7133 -2.3699 0.6340 33 1 -0.4386 -3.1867 3.0912 34 1 -0.1578 -4.3618 1.7856 35 1 2.1768 -2.7493 2.7040 36 1 1.5732 -4.0180 3.7973 37 1 3.0581 -5.2328 2.5027 38 1 1.5467 -5.4861 1.6198 39 1 3.4225 -5.0358 0.1578 40 1 3.6485 -3.4580 0.9431 41 1 2.7455 -4.2708 -2.0939 42 1 3.3457 -2.7010 -1.5078 43 1 0.6024 -2.4314 -2.1222 44 1 -0.9387 -1.4175 -3.2572 45 1 0.6598 0.2742 -9.4264 46 1 2.7819 -0.7942 -8.7517 47 1 3.0217 -1.7249 -6.4945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968890772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:32 Heat of formation + Delta-G solvation = 123.738197 kcal Electronic energy + Delta-G solvation = -30886.967402 eV Core-core repulsion = 26880.402021 eV Total energy + Delta-G solvation = -4006.565381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -41.74451 -39.02156 -38.07646 -37.59117 -34.46850 -33.47308 -33.18925 -31.86905 -31.05643 -30.68733 -29.44655 -26.93841 -25.65398 -24.77047 -23.62889 -23.38954 -22.36416 -21.63622 -19.96872 -19.42996 -19.16598 -18.06541 -17.39455 -16.79328 -16.04399 -15.82894 -15.76529 -15.52662 -14.89469 -14.63067 -14.25861 -14.08302 -13.97756 -13.56791 -13.44194 -13.40079 -12.90292 -12.81247 -12.58650 -12.47242 -12.06412 -11.94603 -11.47728 -11.36549 -11.22955 -11.09374 -10.86038 -10.83294 -10.57541 -10.46199 -10.19570 -10.03035 -9.98478 -9.70383 -9.61782 -9.59206 -9.54068 -9.29512 -8.42897 -8.32846 -7.92481 -6.70185 -5.83219 -3.27121 0.19670 0.96842 1.41842 2.36018 2.95568 3.35299 3.45404 3.46740 3.82392 4.00885 4.18301 4.34456 4.47656 4.49676 4.59880 4.88472 5.20202 5.22252 5.28804 5.34808 5.43807 5.49105 5.58716 5.64992 5.75344 5.88018 5.96216 6.00748 6.05034 6.09713 6.16028 6.31695 6.38104 6.42881 6.57169 6.62693 6.65466 6.71049 6.76205 6.84498 6.99637 7.10670 7.26941 7.33341 7.40141 7.45287 7.65443 7.83211 8.35054 8.42646 8.93992 9.20341 9.84624 10.29795 11.23631 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.003637 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.559205 B = 7695.999855 C = 8473.536065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.015 3.985 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.132 3.868 18 N -0.682 5.682 19 C 0.592 3.408 20 O -0.573 6.573 21 C -0.249 4.249 22 C 0.108 3.892 23 N -0.256 5.256 24 N -0.177 5.177 25 N -0.219 5.219 26 C 0.113 3.887 27 C -0.172 4.172 28 C -0.016 4.016 29 C 0.093 3.907 30 H 0.252 0.748 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.410 0.590 44 H 0.213 0.787 45 H 0.203 0.797 46 H 0.157 0.843 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.950 -5.930 -9.700 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.184 4.184 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.306 5.306 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.063 0.937 17 C 0.007 3.993 18 N -0.330 5.330 19 C 0.378 3.622 20 O -0.455 6.455 21 C -0.265 4.265 22 C -0.073 4.073 23 N -0.081 5.081 24 N -0.044 5.044 25 N -0.032 5.032 26 C -0.080 4.080 27 C -0.197 4.197 28 C -0.044 4.044 29 C -0.032 4.032 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.247 0.753 44 H 0.229 0.771 45 H 0.220 0.780 46 H 0.174 0.826 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.441 -5.046 -10.309 11.486 hybrid contribution 1.554 0.550 0.638 1.768 sum 1.995 -4.496 -9.670 10.850 Atomic orbital electron populations 1.70009 1.04914 1.25320 1.54277 1.24875 0.95121 0.97822 1.00585 0.86437 0.79690 0.84833 0.77145 1.20410 1.21974 1.21708 1.19048 0.92306 0.84594 1.41858 0.91920 1.43728 1.34414 1.01669 1.50758 1.20993 0.88556 0.95479 0.89390 1.22069 0.96063 1.00493 0.99583 1.20947 0.97112 0.99802 0.96561 1.20286 0.98993 0.97913 0.96630 1.21375 0.99675 0.99762 0.96910 1.20513 0.94049 0.89424 0.89601 0.93716 1.21480 0.92512 0.95144 0.90143 1.45420 1.18480 1.57845 1.11247 1.16768 0.85612 0.78192 0.81611 1.90686 1.22555 1.57764 1.74500 1.20017 0.97365 1.15331 0.93831 1.24498 0.92458 0.92566 0.97738 1.77729 1.12161 1.25647 0.92529 1.50945 1.09120 1.36569 1.07763 1.75762 1.25794 1.14500 0.87100 1.24203 0.89647 0.94984 0.99158 1.21660 0.99327 1.01049 0.97667 1.21197 0.98134 0.94029 0.91023 1.19738 0.89499 0.98597 0.95370 0.93745 0.90922 0.95722 0.93287 0.93792 0.90781 0.94251 0.94129 0.93535 0.93312 0.91826 0.93105 0.91305 0.75310 0.77085 0.78040 0.82578 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.10 11.13 55.49 0.62 -22.48 16 2 C 0.01 0.37 4.86 -17.43 -0.08 0.29 16 3 Si 0.89 21.27 29.58 -169.99 -5.03 16.25 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -5.94 7.62 -15.06 -0.11 -6.05 16 8 H 0.06 1.58 6.74 -52.49 -0.35 1.23 16 9 N -0.58 -12.20 1.77 -164.47 -0.29 -12.49 16 10 C 0.18 3.77 4.66 -2.94 -0.01 3.76 16 11 C -0.14 -2.46 5.71 -27.30 -0.16 -2.62 16 12 C -0.11 -1.76 5.51 -28.02 -0.15 -1.91 16 13 C -0.10 -1.53 5.16 -29.79 -0.15 -1.68 16 14 C -0.14 -2.21 5.06 -28.58 -0.14 -2.36 16 15 C 0.17 3.12 2.19 -67.97 -0.15 2.97 16 16 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 17 C 0.13 2.43 4.52 -4.04 -0.02 2.41 16 18 N -0.68 -12.98 4.71 -61.61 -0.29 -13.27 16 19 C 0.59 11.59 7.79 -12.85 -0.10 11.49 16 20 O -0.57 -12.09 15.77 5.19 0.08 -12.01 16 21 C -0.25 -4.57 6.16 -104.73 -0.65 -5.21 16 22 C 0.11 1.91 11.44 -17.12 -0.20 1.72 16 23 N -0.26 -4.77 12.61 30.75 0.39 -4.38 16 24 N -0.18 -3.07 5.25 32.44 0.17 -2.90 16 25 N -0.22 -3.13 11.96 30.60 0.37 -2.76 16 26 C 0.11 1.03 11.28 -17.42 -0.20 0.84 16 27 C -0.17 -1.53 10.04 -39.63 -0.40 -1.93 16 28 C -0.02 -0.21 9.75 -39.55 -0.39 -0.60 16 29 C 0.09 1.58 6.83 -84.06 -0.57 1.00 16 30 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.07 1.74 6.47 -51.93 -0.34 1.41 16 32 H 0.02 0.55 8.02 -51.93 -0.42 0.14 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.72 7.31 -51.93 -0.38 0.34 16 35 H 0.07 1.41 7.48 -51.93 -0.39 1.02 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 39 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 40 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.42 6.84 -51.93 -0.36 1.06 16 43 H 0.41 7.96 7.00 -40.82 -0.29 7.67 16 44 H 0.21 3.43 7.46 -52.49 -0.39 3.03 16 45 H 0.20 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 47 H 0.17 2.14 7.18 -52.48 -0.38 1.77 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -30.39 375.84 -8.41 -38.79 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.60 Total: 7.47 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -3.48 Total: 2.12 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.96 Total: -58.29 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.39 -8.41 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.533 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds