Wall clock time and date at job start Wed Apr 1 2020 02:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48498 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47565 * 300.00148 * 3 2 1 6 6 H 1.48507 * 109.47039 * 60.00513 * 3 2 1 7 7 C 1.38815 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00144 * 164.49467 * 7 2 1 9 9 N 1.36937 * 119.99814 * 344.49253 * 7 2 1 10 10 C 1.47599 * 118.64393 * 331.69899 * 9 7 2 11 11 C 1.53950 * 112.14691 * 222.11485 * 10 9 7 12 12 C 1.50880 * 110.09125 * 40.56082 * 11 10 9 13 13 C 1.52562 * 109.34850 * 268.11330 * 12 11 10 14 14 C 1.47093 * 114.33162 * 85.02683 * 13 12 11 15 15 C 1.44578 * 118.64175 * 151.67813 * 9 7 2 16 16 H 1.08997 * 109.45255 * 209.32130 * 15 9 7 17 17 C 1.53002 * 109.44939 * 329.26650 * 15 9 7 18 18 N 1.46505 * 109.47109 * 304.99738 * 17 15 9 19 19 C 1.34771 * 119.99725 * 180.02562 * 18 17 15 20 20 O 1.21700 * 120.00627 * 359.97438 * 19 18 17 21 21 C 1.46680 * 119.99706 * 180.02562 * 19 18 17 22 22 C 1.40328 * 126.55829 * 359.97438 * 21 19 18 23 23 N 1.31004 * 108.78089 * 180.02562 * 22 21 19 24 24 N 1.39900 * 109.55462 * 359.97438 * 23 22 21 25 25 N 1.40023 * 132.51795 * 180.02562 * 24 23 22 26 26 C 1.30834 * 120.65835 * 179.97438 * 25 24 23 27 27 C 1.39735 * 120.97675 * 0.02562 * 26 25 24 28 28 C 1.36553 * 119.93779 * 359.97438 * 27 26 25 29 29 C 1.36757 * 107.87445 * 0.02562 * 24 23 22 30 30 H 0.97008 * 119.99626 * 359.97438 * 1 2 3 31 31 H 1.09002 * 108.94649 * 342.79963 * 10 9 7 32 32 H 1.08997 * 108.94963 * 101.51542 * 10 9 7 33 33 H 1.08998 * 109.36376 * 160.75191 * 11 10 9 34 34 H 1.08994 * 109.36751 * 280.49718 * 11 10 9 35 35 H 1.09000 * 109.49025 * 28.07804 * 12 11 10 36 36 H 1.09007 * 109.48988 * 148.12505 * 12 11 10 37 37 H 1.08997 * 108.51192 * 206.28340 * 13 12 11 38 38 H 1.09003 * 108.51149 * 323.93109 * 13 12 11 39 39 H 1.08998 * 109.32797 * 176.93076 * 14 13 12 40 40 H 1.09007 * 109.32885 * 57.45088 * 14 13 12 41 41 H 1.09004 * 109.47267 * 184.99776 * 17 15 9 42 42 H 1.08997 * 109.47149 * 64.99923 * 17 15 9 43 43 H 0.96999 * 119.99371 * 0.02562 * 18 17 15 44 44 H 1.08001 * 125.61070 * 0.02765 * 22 21 19 45 45 H 1.08003 * 119.51026 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.02542 * 179.72096 * 27 26 25 47 47 H 1.08006 * 120.44524 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2506 9 7 1.3628 -2.3666 0.3160 10 6 0.2008 -2.3058 1.2241 11 6 0.2094 -3.4492 2.2550 12 6 1.6117 -3.6796 2.7618 13 6 2.2912 -4.7421 1.9034 14 6 2.9175 -4.2221 0.6783 15 6 1.8455 -3.6048 -0.2534 16 1 1.0150 -4.3022 -0.3626 17 6 2.4620 -3.3280 -1.6261 18 7 1.4836 -2.6385 -2.4709 19 6 1.8078 -2.2921 -3.7323 20 8 2.9135 -2.5516 -4.1696 21 6 0.8284 -1.6013 -4.5779 22 6 -0.4776 -1.2362 -4.2168 23 7 -1.0454 -0.6390 -5.2352 24 7 -0.1466 -0.5830 -6.3059 25 7 -0.2487 -0.0602 -7.6008 26 6 0.7590 -0.1348 -8.4318 27 6 1.9614 -0.7369 -8.0519 28 6 2.0962 -1.2574 -6.7966 29 6 1.0185 -1.1778 -5.9073 30 1 -0.4850 0.8401 0.0004 31 1 0.2143 -1.3526 1.7527 32 1 -0.7133 -2.3699 0.6340 33 1 -0.4386 -3.1867 3.0912 34 1 -0.1578 -4.3618 1.7856 35 1 2.1768 -2.7493 2.7040 36 1 1.5732 -4.0180 3.7973 37 1 3.0581 -5.2328 2.5027 38 1 1.5467 -5.4861 1.6198 39 1 3.4225 -5.0358 0.1578 40 1 3.6485 -3.4580 0.9431 41 1 2.7455 -4.2708 -2.0939 42 1 3.3457 -2.7010 -1.5078 43 1 0.6024 -2.4314 -2.1222 44 1 -0.9387 -1.4175 -3.2572 45 1 0.6598 0.2742 -9.4264 46 1 2.7819 -0.7942 -8.7517 47 1 3.0217 -1.7249 -6.4945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968890772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:31 Heat of formation + Delta-G solvation = 104.556503 kcal Electronic energy + Delta-G solvation = -30887.799183 eV Core-core repulsion = 26880.402021 eV Total energy + Delta-G solvation = -4007.397162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.93023 -40.50216 -39.45865 -38.80569 -35.94592 -35.17638 -34.25176 -33.30854 -32.45221 -32.19853 -30.71449 -28.50196 -27.22678 -25.79176 -25.18911 -24.76590 -23.65252 -23.04604 -21.40600 -20.80645 -20.75886 -19.29787 -18.54314 -18.10454 -17.48072 -17.19209 -16.98684 -16.95899 -16.33806 -16.16795 -15.90605 -15.52474 -15.22980 -15.18719 -14.87756 -14.46727 -14.40206 -14.22317 -13.71255 -13.58774 -13.57315 -13.34722 -13.10932 -12.88725 -12.83292 -12.70114 -12.55977 -12.33812 -11.99296 -11.92177 -11.53185 -11.50455 -11.36425 -11.28608 -11.15955 -11.03937 -10.81504 -10.77278 -10.33557 -9.82756 -9.21346 -8.51126 -7.77675 -5.19364 -0.80244 -0.04812 0.31533 0.99197 1.37222 1.45059 1.48433 1.97060 2.40217 2.53942 2.59542 3.17256 3.34183 3.38068 3.46426 3.61917 3.64966 3.94263 4.07957 4.10436 4.13982 4.29252 4.31946 4.35399 4.48661 4.56199 4.66024 4.72263 4.83794 4.86532 4.95641 5.05034 5.09923 5.13546 5.17435 5.17656 5.30438 5.30986 5.42677 5.46747 5.59755 5.70079 5.74198 5.80297 5.84349 5.94191 6.14277 6.35379 6.50200 6.81285 7.30019 7.41487 8.04334 8.42423 9.25605 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.003637 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.559205 B = 7695.999855 C = 8473.536065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.023 4.023 3 Si 0.922 3.078 4 H -0.279 1.279 5 H -0.309 1.309 6 H -0.293 1.293 7 C -0.226 4.226 8 H 0.049 0.951 9 N -0.587 5.587 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.100 4.100 14 C -0.128 4.128 15 C 0.173 3.827 16 H 0.057 0.943 17 C 0.136 3.864 18 N -0.684 5.684 19 C 0.592 3.408 20 O -0.594 6.594 21 C -0.292 4.292 22 C 0.109 3.891 23 N -0.293 5.293 24 N -0.189 5.189 25 N -0.258 5.258 26 C 0.133 3.867 27 C -0.119 4.119 28 C -0.060 4.060 29 C 0.098 3.902 30 H 0.244 0.756 31 H 0.037 0.963 32 H 0.004 0.996 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.407 0.593 44 H 0.213 0.787 45 H 0.267 0.733 46 H 0.215 0.785 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -7.327 -11.884 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.219 4.219 3 Si 0.755 3.245 4 H -0.204 1.204 5 H -0.237 1.237 6 H -0.220 1.220 7 C -0.357 4.357 8 H 0.067 0.933 9 N -0.310 5.310 10 C 0.065 3.935 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.168 4.168 15 C 0.065 3.935 16 H 0.075 0.925 17 C 0.011 3.989 18 N -0.331 5.331 19 C 0.380 3.620 20 O -0.479 6.479 21 C -0.308 4.308 22 C -0.071 4.071 23 N -0.118 5.118 24 N -0.054 5.054 25 N -0.071 5.071 26 C -0.058 4.058 27 C -0.143 4.143 28 C -0.088 4.088 29 C -0.030 4.030 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.243 0.757 44 H 0.229 0.771 45 H 0.282 0.718 46 H 0.232 0.768 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.684 -6.466 -12.473 14.150 hybrid contribution 1.278 1.022 1.005 1.920 sum 2.962 -5.444 -11.468 13.035 Atomic orbital electron populations 1.70088 1.05212 1.24661 1.56095 1.25176 0.95529 0.99069 1.02167 0.85898 0.79033 0.83530 0.76080 1.20410 1.23695 1.22012 1.18963 0.91595 0.85605 1.39537 0.93331 1.43774 1.34121 1.01896 1.51188 1.20774 0.87601 0.95552 0.89619 1.21941 0.97190 0.99284 0.98715 1.20909 0.95979 0.98945 0.98293 1.20271 0.99852 0.97640 0.95989 1.21284 0.98517 0.99810 0.97239 1.20692 0.94986 0.88261 0.89563 0.92468 1.21480 0.91503 0.95295 0.90615 1.45461 1.18336 1.58020 1.11330 1.16964 0.85585 0.77804 0.81681 1.90641 1.23381 1.58899 1.74939 1.19949 0.97585 1.18175 0.95139 1.24463 0.92503 0.92391 0.97763 1.77566 1.13611 1.27196 0.93437 1.51098 1.08820 1.36803 1.08678 1.75881 1.28597 1.16318 0.86303 1.25442 0.88183 0.92063 1.00124 1.22373 1.00223 0.95570 0.96164 1.21393 0.97394 0.97390 0.92607 1.20185 0.90379 0.97157 0.95274 0.94663 0.94491 0.97763 0.92225 0.92157 0.93920 0.91960 0.91991 0.92033 0.90762 0.93918 0.91280 0.93836 0.75706 0.77102 0.71799 0.76806 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.18 11.13 21.65 0.24 -48.94 16 2 C -0.02 -1.20 4.86 84.86 0.41 -0.79 16 3 Si 0.92 45.34 29.58 68.60 2.03 47.37 16 4 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 6 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 7 C -0.23 -11.19 7.62 84.03 0.64 -10.55 16 8 H 0.05 2.55 6.74 -2.91 -0.02 2.53 16 9 N -0.59 -25.08 1.77 -674.25 -1.20 -26.28 16 10 C 0.19 8.08 4.66 86.49 0.40 8.49 16 11 C -0.13 -4.39 5.71 30.23 0.17 -4.21 16 12 C -0.10 -3.22 5.51 29.76 0.16 -3.06 16 13 C -0.10 -2.74 5.16 28.61 0.15 -2.60 16 14 C -0.13 -3.93 5.06 29.39 0.15 -3.78 16 15 C 0.17 6.14 2.19 45.99 0.10 6.24 16 16 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 17 C 0.14 5.07 4.52 86.38 0.39 5.46 16 18 N -0.68 -27.16 4.71 -467.06 -2.20 -29.36 16 19 C 0.59 24.28 7.79 86.45 0.67 24.95 16 20 O -0.59 -25.88 15.77 -4.35 -0.07 -25.95 16 21 C -0.29 -11.32 6.16 -19.93 -0.12 -11.44 16 22 C 0.11 4.17 11.44 85.33 0.98 5.14 16 23 N -0.29 -11.53 12.61 -56.63 -0.71 -12.25 16 24 N -0.19 -6.63 5.25 -51.29 -0.27 -6.90 16 25 N -0.26 -6.88 11.96 -57.11 -0.68 -7.56 16 26 C 0.13 1.79 11.28 85.20 0.96 2.75 16 27 C -0.12 -1.53 10.04 22.24 0.22 -1.30 16 28 C -0.06 -1.48 9.75 22.29 0.22 -1.26 16 29 C 0.10 3.35 6.83 39.42 0.27 3.62 16 30 H 0.24 13.26 8.31 -92.70 -0.77 12.49 16 31 H 0.04 1.83 6.47 -2.39 -0.02 1.82 16 32 H 0.00 0.20 8.02 -2.39 -0.02 0.18 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.82 7.31 -2.39 -0.02 1.80 16 35 H 0.04 1.60 7.48 -2.39 -0.02 1.58 16 36 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.55 7.35 -2.39 -0.02 1.53 16 39 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 40 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.04 1.84 6.84 -2.39 -0.02 1.83 16 43 H 0.41 16.67 7.00 -92.71 -0.65 16.02 16 44 H 0.21 7.61 7.46 -2.91 -0.02 7.59 16 45 H 0.27 0.07 8.06 -2.91 -0.02 0.04 16 46 H 0.22 0.35 8.06 -2.91 -0.02 0.33 16 47 H 0.17 4.13 7.18 -2.91 -0.02 4.10 16 Total: -1.00 -72.81 375.84 3.27 -69.54 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.35 Total: 22.67 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 5.78 Total: 17.65 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -4.82 Total: -131.29 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.07 Total: -25.95 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -72.81 3.27 -69.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.095 kcal (2) G-P(sol) polarization free energy of solvation -72.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds