Wall clock time and date at job start Wed Apr 1 2020 02:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99999 * 2 1 4 4 H 1.48499 * 109.47199 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47060 * 239.99931 * 3 2 1 6 6 H 1.48502 * 109.46926 * 120.00001 * 3 2 1 7 7 C 1.38809 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00048 * 205.16695 * 7 2 1 9 9 N 1.36941 * 119.99805 * 25.16005 * 7 2 1 10 10 C 1.47605 * 118.64157 * 29.66700 * 9 7 2 11 11 C 1.54298 * 111.93911 * 137.77604 * 10 9 7 12 12 C 1.50883 * 110.24013 * 319.70284 * 11 10 9 13 13 C 1.52564 * 109.35668 * 91.79598 * 12 11 10 14 14 C 1.47095 * 114.32929 * 274.98695 * 13 12 11 15 15 C 1.44575 * 118.64298 * 209.93516 * 9 7 2 16 16 H 1.09003 * 109.44837 * 150.66546 * 15 9 7 17 17 C 1.53003 * 109.45070 * 30.72229 * 15 9 7 18 18 N 1.46493 * 109.47263 * 55.00058 * 17 15 9 19 19 C 1.34776 * 120.00021 * 180.02562 * 18 17 15 20 20 O 1.21698 * 119.99781 * 359.97438 * 19 18 17 21 21 C 1.46669 * 120.00122 * 179.97438 * 19 18 17 22 22 C 1.40339 * 126.56039 * 359.68042 * 21 19 18 23 23 N 1.31000 * 108.77842 * 179.81643 * 22 21 19 24 24 N 1.39901 * 109.56144 * 0.45336 * 23 22 21 25 25 N 1.40018 * 132.52148 * 179.70765 * 24 23 22 26 26 C 1.30834 * 120.65837 * 179.97438 * 25 24 23 27 27 C 1.39736 * 120.97467 * 0.02562 * 26 25 24 28 28 C 1.36554 * 119.94240 * 359.97438 * 27 26 25 29 29 C 1.36759 * 107.86913 * 359.71540 * 24 23 22 30 30 H 0.96996 * 120.00097 * 185.91399 * 1 2 3 31 31 H 1.08997 * 108.94840 * 258.57290 * 10 9 7 32 32 H 1.08997 * 108.94892 * 17.20655 * 10 9 7 33 33 H 1.09001 * 109.36545 * 199.42413 * 11 10 9 34 34 H 1.09004 * 109.22326 * 79.89531 * 11 10 9 35 35 H 1.09008 * 109.48498 * 331.83201 * 12 11 10 36 36 H 1.08995 * 109.49005 * 211.77030 * 12 11 10 37 37 H 1.09004 * 108.50803 * 153.73595 * 13 12 11 38 38 H 1.08992 * 108.39177 * 36.15837 * 13 12 11 39 39 H 1.08993 * 109.33016 * 302.54521 * 14 13 12 40 40 H 1.08996 * 109.18948 * 182.97421 * 14 13 12 41 41 H 1.09006 * 109.46896 * 174.99841 * 17 15 9 42 42 H 1.08994 * 109.46820 * 294.99565 * 17 15 9 43 43 H 0.97006 * 119.99968 * 359.97438 * 18 17 15 44 44 H 1.08000 * 125.60965 * 0.02562 * 22 21 19 45 45 H 1.07999 * 119.51598 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.02879 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.44667 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0134 -1.2466 0.3972 9 7 1.4230 -2.3315 -0.5053 10 6 0.4271 -2.1889 -1.5853 11 6 0.6113 -3.2565 -2.6840 12 6 2.0785 -3.4707 -2.9630 13 6 2.6011 -4.6013 -2.0819 14 6 3.0125 -4.1787 -0.7344 15 6 1.7998 -3.6139 0.0458 16 1 0.9611 -4.3052 -0.0371 17 6 2.1765 -3.4446 1.5190 18 7 1.0713 -2.8028 2.2351 19 6 1.1793 -2.5509 3.5547 20 8 2.1948 -2.8570 4.1514 21 6 0.0730 -1.9078 4.2715 22 6 -1.1503 -1.4936 3.7224 23 7 -1.8824 -0.9672 4.6726 24 7 -1.1769 -1.0004 5.8803 25 7 -1.4945 -0.5694 7.1740 26 6 -0.6419 -0.7184 8.1551 27 6 0.6059 -1.3096 7.9399 28 6 0.9491 -1.7416 6.6908 29 6 0.0374 -1.5823 5.6410 30 1 -0.4850 -0.8355 0.0866 31 1 -0.5721 -2.2825 -1.1600 32 1 0.5287 -1.1999 -2.0321 33 1 0.1144 -2.9260 -3.5961 34 1 0.1659 -4.1942 -2.3515 35 1 2.6278 -2.5550 -2.7436 36 1 2.2146 -3.7343 -4.0118 37 1 3.4573 -5.0588 -2.5776 38 1 1.8170 -5.3521 -1.9849 39 1 3.7792 -3.4084 -0.8162 40 1 3.4187 -5.0364 -0.1983 41 1 2.3748 -4.4224 1.9581 42 1 3.0690 -2.8238 1.5967 43 1 0.2621 -2.5585 1.7593 44 1 -1.4416 -1.5955 2.6874 45 1 -0.9062 -0.3796 9.1459 46 1 1.2983 -1.4247 8.7608 47 1 1.9111 -2.2000 6.5154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968890773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:38 Heat of formation + Delta-G solvation = 121.566725 kcal Electronic energy + Delta-G solvation = -30953.075221 eV Core-core repulsion = 26946.415678 eV Total energy + Delta-G solvation = -4006.659543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -41.76177 -39.10400 -38.16483 -37.63656 -34.56919 -33.73020 -33.20603 -31.96456 -31.08328 -30.60345 -29.46028 -26.85976 -25.73554 -24.78507 -23.65012 -23.26897 -22.43344 -21.74644 -20.04701 -19.50915 -19.19566 -18.13274 -17.48430 -17.06824 -16.29565 -15.86189 -15.84002 -15.52861 -15.03078 -14.70735 -14.18698 -14.10551 -13.99817 -13.63312 -13.49098 -13.45054 -12.98524 -12.82988 -12.60960 -12.50127 -12.17925 -12.05414 -11.82616 -11.39366 -11.35064 -11.00490 -10.84959 -10.74033 -10.47557 -10.27584 -10.21342 -10.08894 -10.07969 -9.94207 -9.75987 -9.63307 -9.35977 -9.23021 -8.40564 -8.30304 -7.95712 -6.90648 -6.05385 -3.28990 0.18535 0.95709 1.40340 2.33364 2.94462 3.50102 3.52245 3.69121 3.77405 3.97557 4.16524 4.33050 4.48276 4.56150 4.57637 4.86125 5.04923 5.20621 5.25362 5.28804 5.35933 5.42831 5.54131 5.58041 5.73993 5.78156 5.86856 5.93250 5.97571 6.01077 6.05095 6.24178 6.27727 6.38161 6.45040 6.51972 6.54452 6.57332 6.67541 6.71175 6.86808 7.02252 7.05777 7.16821 7.22099 7.32009 7.43562 8.06828 8.26156 8.57605 8.87496 9.11556 9.81613 10.19157 11.18499 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.003632 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.868699 B = 7706.836733 C = 8493.179666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.010 4.010 3 Si 1.050 2.950 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.346 4.346 8 H 0.053 0.947 9 N -0.589 5.589 10 C 0.158 3.842 11 C -0.136 4.136 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.135 4.135 15 C 0.174 3.826 16 H 0.042 0.958 17 C 0.135 3.865 18 N -0.683 5.683 19 C 0.593 3.407 20 O -0.571 6.571 21 C -0.250 4.250 22 C 0.109 3.891 23 N -0.254 5.254 24 N -0.176 5.176 25 N -0.218 5.218 26 C 0.113 3.887 27 C -0.171 4.171 28 C -0.017 4.017 29 C 0.095 3.905 30 H 0.265 0.735 31 H 0.017 0.983 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.404 0.596 44 H 0.208 0.792 45 H 0.204 0.796 46 H 0.157 0.843 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 -6.784 9.178 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.213 4.213 3 Si 0.881 3.119 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.475 4.475 8 H 0.070 0.930 9 N -0.312 5.312 10 C 0.033 3.967 11 C -0.175 4.175 12 C -0.144 4.144 13 C -0.139 4.139 14 C -0.176 4.176 15 C 0.066 3.934 16 H 0.060 0.940 17 C 0.010 3.990 18 N -0.330 5.330 19 C 0.380 3.620 20 O -0.453 6.453 21 C -0.267 4.267 22 C -0.072 4.072 23 N -0.078 5.078 24 N -0.043 5.043 25 N -0.031 5.031 26 C -0.080 4.080 27 C -0.196 4.196 28 C -0.044 4.044 29 C -0.030 4.030 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.240 0.760 44 H 0.225 0.775 45 H 0.220 0.780 46 H 0.175 0.825 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.991 -4.400 9.533 10.546 hybrid contribution 1.480 -2.041 -0.391 2.551 sum 0.489 -6.441 9.142 11.194 Atomic orbital electron populations 1.70877 1.06500 1.29822 1.47796 1.25559 0.96375 1.00956 0.98421 0.83716 0.75108 0.76930 0.76132 1.21285 1.22186 1.22216 1.19762 0.97851 0.88487 1.41384 0.92954 1.43780 1.48767 1.01394 1.37241 1.21276 0.91010 0.97163 0.87283 1.21988 0.96233 0.99961 0.99347 1.20938 0.96803 0.99712 0.96992 1.20292 0.99576 0.97791 0.96197 1.21339 1.00203 0.99937 0.96085 1.20512 0.94403 0.88688 0.89821 0.94001 1.21443 0.90362 0.95615 0.91567 1.45366 1.20194 1.60120 1.07366 1.16761 0.85197 0.78018 0.82042 1.90687 1.30982 1.55385 1.68205 1.19989 0.98882 1.16241 0.91582 1.24398 0.90978 0.92667 0.99159 1.77731 1.17813 1.26232 0.86043 1.50941 1.10167 1.37858 1.05337 1.75771 1.25594 1.15844 0.85861 1.24212 0.91265 0.94447 0.98042 1.21666 0.97934 1.01399 0.98589 1.21193 0.99549 0.93965 0.89735 1.19728 0.89050 0.98748 0.95522 0.92361 0.96496 0.91363 0.93029 0.93525 0.90629 0.93968 0.93963 0.93559 0.91690 0.93261 0.93133 0.91140 0.76014 0.77514 0.77991 0.82543 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.00 12.63 55.49 0.70 -23.30 16 2 C -0.01 -0.26 4.58 -17.43 -0.08 -0.34 16 3 Si 1.05 24.64 29.99 -169.99 -5.10 19.54 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.35 -8.35 7.45 -15.06 -0.11 -8.46 16 8 H 0.05 1.36 6.89 -52.49 -0.36 1.00 16 9 N -0.59 -12.29 1.60 -164.25 -0.26 -12.55 16 10 C 0.16 3.23 4.57 -2.76 -0.01 3.22 16 11 C -0.14 -2.30 5.71 -27.11 -0.15 -2.45 16 12 C -0.11 -1.75 5.51 -28.02 -0.15 -1.90 16 13 C -0.10 -1.53 5.16 -29.79 -0.15 -1.69 16 14 C -0.13 -2.21 5.06 -28.58 -0.14 -2.36 16 15 C 0.17 3.16 2.19 -67.97 -0.15 3.01 16 16 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 17 C 0.13 2.53 4.52 -4.04 -0.02 2.51 16 18 N -0.68 -13.15 4.71 -61.62 -0.29 -13.44 16 19 C 0.59 11.79 7.79 -12.86 -0.10 11.69 16 20 O -0.57 -12.20 15.77 5.19 0.08 -12.12 16 21 C -0.25 -4.65 6.16 -104.73 -0.65 -5.29 16 22 C 0.11 1.95 11.44 -17.12 -0.20 1.76 16 23 N -0.25 -4.77 12.61 30.75 0.39 -4.39 16 24 N -0.18 -3.07 5.25 32.44 0.17 -2.90 16 25 N -0.22 -3.13 11.96 30.60 0.37 -2.76 16 26 C 0.11 1.04 11.28 -17.42 -0.20 0.84 16 27 C -0.17 -1.53 10.04 -39.63 -0.40 -1.92 16 28 C -0.02 -0.22 9.75 -39.55 -0.39 -0.60 16 29 C 0.10 1.62 6.83 -84.05 -0.57 1.04 16 30 H 0.27 6.77 6.42 -40.82 -0.26 6.51 16 31 H 0.02 0.36 7.15 -51.93 -0.37 -0.01 16 32 H 0.07 1.61 6.83 -51.93 -0.35 1.25 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.74 7.31 -51.93 -0.38 0.36 16 35 H 0.08 1.44 7.49 -51.92 -0.39 1.06 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.49 6.87 -51.93 -0.36 1.14 16 43 H 0.40 7.84 7.00 -40.82 -0.29 7.55 16 44 H 0.21 3.41 7.46 -52.49 -0.39 3.01 16 45 H 0.20 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.16 0.74 8.06 -52.48 -0.42 0.31 16 47 H 0.17 2.16 7.18 -52.49 -0.38 1.78 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -31.17 374.82 -8.27 -39.45 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.51 Total: 7.77 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.47 Total: -0.95 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 1.07 Total: -59.34 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.10 Total: 19.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.17 -8.27 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.017 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds