Wall clock time and date at job start Wed Apr 1 2020 02:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99999 * 2 1 4 4 H 1.48499 * 109.47199 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47060 * 239.99931 * 3 2 1 6 6 H 1.48502 * 109.46926 * 120.00001 * 3 2 1 7 7 C 1.38809 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00048 * 205.16695 * 7 2 1 9 9 N 1.36941 * 119.99805 * 25.16005 * 7 2 1 10 10 C 1.47605 * 118.64157 * 29.66700 * 9 7 2 11 11 C 1.54298 * 111.93911 * 137.77604 * 10 9 7 12 12 C 1.50883 * 110.24013 * 319.70284 * 11 10 9 13 13 C 1.52564 * 109.35668 * 91.79598 * 12 11 10 14 14 C 1.47095 * 114.32929 * 274.98695 * 13 12 11 15 15 C 1.44575 * 118.64298 * 209.93516 * 9 7 2 16 16 H 1.09003 * 109.44837 * 150.66546 * 15 9 7 17 17 C 1.53003 * 109.45070 * 30.72229 * 15 9 7 18 18 N 1.46493 * 109.47263 * 55.00058 * 17 15 9 19 19 C 1.34776 * 120.00021 * 180.02562 * 18 17 15 20 20 O 1.21698 * 119.99781 * 359.97438 * 19 18 17 21 21 C 1.46669 * 120.00122 * 179.97438 * 19 18 17 22 22 C 1.40339 * 126.56039 * 359.68042 * 21 19 18 23 23 N 1.31000 * 108.77842 * 179.81643 * 22 21 19 24 24 N 1.39901 * 109.56144 * 0.45336 * 23 22 21 25 25 N 1.40018 * 132.52148 * 179.70765 * 24 23 22 26 26 C 1.30834 * 120.65837 * 179.97438 * 25 24 23 27 27 C 1.39736 * 120.97467 * 0.02562 * 26 25 24 28 28 C 1.36554 * 119.94240 * 359.97438 * 27 26 25 29 29 C 1.36759 * 107.86913 * 359.71540 * 24 23 22 30 30 H 0.96996 * 120.00097 * 185.91399 * 1 2 3 31 31 H 1.08997 * 108.94840 * 258.57290 * 10 9 7 32 32 H 1.08997 * 108.94892 * 17.20655 * 10 9 7 33 33 H 1.09001 * 109.36545 * 199.42413 * 11 10 9 34 34 H 1.09004 * 109.22326 * 79.89531 * 11 10 9 35 35 H 1.09008 * 109.48498 * 331.83201 * 12 11 10 36 36 H 1.08995 * 109.49005 * 211.77030 * 12 11 10 37 37 H 1.09004 * 108.50803 * 153.73595 * 13 12 11 38 38 H 1.08992 * 108.39177 * 36.15837 * 13 12 11 39 39 H 1.08993 * 109.33016 * 302.54521 * 14 13 12 40 40 H 1.08996 * 109.18948 * 182.97421 * 14 13 12 41 41 H 1.09006 * 109.46896 * 174.99841 * 17 15 9 42 42 H 1.08994 * 109.46820 * 294.99565 * 17 15 9 43 43 H 0.97006 * 119.99968 * 359.97438 * 18 17 15 44 44 H 1.08000 * 125.60965 * 0.02562 * 22 21 19 45 45 H 1.07999 * 119.51598 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.02879 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.44667 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0134 -1.2466 0.3972 9 7 1.4230 -2.3315 -0.5053 10 6 0.4271 -2.1889 -1.5853 11 6 0.6113 -3.2565 -2.6840 12 6 2.0785 -3.4707 -2.9630 13 6 2.6011 -4.6013 -2.0819 14 6 3.0125 -4.1787 -0.7344 15 6 1.7998 -3.6139 0.0458 16 1 0.9611 -4.3052 -0.0371 17 6 2.1765 -3.4446 1.5190 18 7 1.0713 -2.8028 2.2351 19 6 1.1793 -2.5509 3.5547 20 8 2.1948 -2.8570 4.1514 21 6 0.0730 -1.9078 4.2715 22 6 -1.1503 -1.4936 3.7224 23 7 -1.8824 -0.9672 4.6726 24 7 -1.1769 -1.0004 5.8803 25 7 -1.4945 -0.5694 7.1740 26 6 -0.6419 -0.7184 8.1551 27 6 0.6059 -1.3096 7.9399 28 6 0.9491 -1.7416 6.6908 29 6 0.0374 -1.5823 5.6410 30 1 -0.4850 -0.8355 0.0866 31 1 -0.5721 -2.2825 -1.1600 32 1 0.5287 -1.1999 -2.0321 33 1 0.1144 -2.9260 -3.5961 34 1 0.1659 -4.1942 -2.3515 35 1 2.6278 -2.5550 -2.7436 36 1 2.2146 -3.7343 -4.0118 37 1 3.4573 -5.0588 -2.5776 38 1 1.8170 -5.3521 -1.9849 39 1 3.7792 -3.4084 -0.8162 40 1 3.4187 -5.0364 -0.1983 41 1 2.3748 -4.4224 1.9581 42 1 3.0690 -2.8238 1.5967 43 1 0.2621 -2.5585 1.7593 44 1 -1.4416 -1.5955 2.6874 45 1 -0.9062 -0.3796 9.1459 46 1 1.2983 -1.4247 8.7608 47 1 1.9111 -2.2000 6.5154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968890773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:37 Heat of formation + Delta-G solvation = 101.712310 kcal Electronic energy + Delta-G solvation = -30953.936173 eV Core-core repulsion = 26946.415678 eV Total energy + Delta-G solvation = -4007.520495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.96030 -40.60683 -39.57403 -38.84031 -36.06099 -35.42824 -34.27518 -33.40983 -32.38072 -32.20196 -30.74339 -28.41254 -27.31677 -25.81527 -25.04955 -24.85284 -23.72548 -23.16264 -21.47844 -20.91399 -20.80756 -19.43247 -18.84512 -18.30841 -17.61776 -17.20870 -17.01181 -16.95969 -16.46509 -16.11615 -15.69254 -15.65895 -15.47168 -15.26812 -14.93553 -14.49753 -14.40330 -14.30527 -13.78622 -13.68747 -13.60559 -13.53338 -13.36666 -12.88613 -12.64645 -12.60780 -12.56688 -12.03948 -11.95245 -11.94411 -11.67917 -11.54859 -11.44819 -11.35956 -11.17633 -11.00405 -10.86097 -10.84072 -10.26528 -9.89955 -9.25194 -8.72622 -8.01446 -5.23149 -0.82326 -0.06878 0.28920 0.94706 1.56139 1.58637 1.76410 1.94804 2.33530 2.53630 2.67928 3.13637 3.30686 3.31502 3.42040 3.55419 3.60269 3.89887 3.97194 4.04837 4.07546 4.20787 4.25792 4.29839 4.37009 4.42739 4.54413 4.58219 4.76927 4.83112 4.91618 4.92254 4.99305 5.04003 5.06927 5.15220 5.16200 5.18633 5.27594 5.36959 5.45129 5.54736 5.57618 5.65504 5.72352 6.07346 6.10983 6.33529 6.60012 6.73286 7.26449 7.34449 7.94857 8.32425 9.20550 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.003632 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.868699 B = 7706.836733 C = 8493.179666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.051 4.051 3 Si 1.080 2.920 4 H -0.298 1.298 5 H -0.285 1.285 6 H -0.297 1.297 7 C -0.323 4.323 8 H 0.032 0.968 9 N -0.593 5.593 10 C 0.165 3.835 11 C -0.126 4.126 12 C -0.104 4.104 13 C -0.100 4.100 14 C -0.127 4.127 15 C 0.174 3.826 16 H 0.056 0.944 17 C 0.139 3.861 18 N -0.685 5.685 19 C 0.592 3.408 20 O -0.593 6.593 21 C -0.294 4.294 22 C 0.109 3.891 23 N -0.291 5.291 24 N -0.188 5.188 25 N -0.257 5.257 26 C 0.134 3.866 27 C -0.116 4.116 28 C -0.062 4.062 29 C 0.100 3.900 30 H 0.262 0.738 31 H 0.005 0.995 32 H 0.031 0.969 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.402 0.598 44 H 0.208 0.792 45 H 0.268 0.732 46 H 0.216 0.784 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 -8.166 11.369 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.250 4.250 3 Si 0.910 3.090 4 H -0.225 1.225 5 H -0.211 1.211 6 H -0.224 1.224 7 C -0.453 4.453 8 H 0.050 0.950 9 N -0.316 5.316 10 C 0.040 3.960 11 C -0.165 4.165 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.167 4.167 15 C 0.067 3.933 16 H 0.074 0.926 17 C 0.014 3.986 18 N -0.332 5.332 19 C 0.380 3.620 20 O -0.477 6.477 21 C -0.311 4.311 22 C -0.071 4.071 23 N -0.116 5.116 24 N -0.053 5.053 25 N -0.070 5.070 26 C -0.057 4.057 27 C -0.141 4.141 28 C -0.089 4.089 29 C -0.028 4.028 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.237 0.763 44 H 0.224 0.776 45 H 0.283 0.717 46 H 0.233 0.767 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.278 -5.803 11.699 13.062 hybrid contribution 1.310 -1.596 -0.738 2.192 sum 1.032 -7.399 10.961 13.265 Atomic orbital electron populations 1.70905 1.06867 1.29710 1.50079 1.26130 0.96634 1.02724 0.99515 0.83283 0.74317 0.75088 0.76292 1.22462 1.21149 1.22394 1.19617 0.96576 0.89513 1.39619 0.95004 1.43813 1.48538 1.01603 1.37688 1.21122 0.90157 0.96789 0.87947 1.21893 0.97170 0.99175 0.98278 1.20905 0.95700 0.98758 0.98790 1.20277 1.00922 0.97548 0.95023 1.21253 0.98393 0.99950 0.97110 1.20682 0.95705 0.87549 0.89413 0.92588 1.21428 0.89142 0.95717 0.92276 1.45404 1.20117 1.60245 1.07401 1.16983 0.85313 0.77598 0.82061 1.90640 1.31867 1.56597 1.68601 1.19914 0.99032 1.19231 0.92887 1.24363 0.91011 0.92513 0.99227 1.77565 1.19051 1.27860 0.87085 1.51093 1.10032 1.37996 1.06130 1.75895 1.27942 1.17870 0.85271 1.25464 0.90205 0.91210 0.98865 1.22387 0.97894 0.95779 0.98032 1.21385 0.99476 0.97368 0.90686 1.20173 0.89545 0.97281 0.95791 0.92704 0.97728 0.95006 0.91758 0.91793 0.94006 0.91580 0.91863 0.91938 0.94090 0.90823 0.91375 0.94079 0.76283 0.77555 0.71681 0.76717 0.81502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.59 12.63 21.65 0.27 -51.32 16 2 C -0.05 -2.70 4.58 84.86 0.39 -2.31 16 3 Si 1.08 51.83 29.99 68.60 2.06 53.88 16 4 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 7 C -0.32 -16.25 7.45 84.03 0.63 -15.63 16 8 H 0.03 1.74 6.89 -2.91 -0.02 1.72 16 9 N -0.59 -25.42 1.60 -673.56 -1.08 -26.50 16 10 C 0.16 6.90 4.57 86.61 0.40 7.30 16 11 C -0.13 -4.09 5.71 30.35 0.17 -3.92 16 12 C -0.10 -3.21 5.51 29.76 0.16 -3.05 16 13 C -0.10 -2.76 5.16 28.61 0.15 -2.62 16 14 C -0.13 -3.98 5.06 29.40 0.15 -3.83 16 15 C 0.17 6.29 2.19 45.99 0.10 6.39 16 16 H 0.06 1.91 8.06 -2.39 -0.02 1.89 16 17 C 0.14 5.34 4.52 86.38 0.39 5.73 16 18 N -0.68 -27.70 4.71 -467.09 -2.20 -29.90 16 19 C 0.59 24.80 7.79 86.44 0.67 25.47 16 20 O -0.59 -26.35 15.77 -4.34 -0.07 -26.42 16 21 C -0.29 -11.58 6.16 -19.93 -0.12 -11.71 16 22 C 0.11 4.24 11.44 85.33 0.98 5.22 16 23 N -0.29 -11.56 12.61 -56.62 -0.71 -12.27 16 24 N -0.19 -6.62 5.25 -51.28 -0.27 -6.89 16 25 N -0.26 -6.86 11.96 -57.11 -0.68 -7.54 16 26 C 0.13 1.79 11.28 85.20 0.96 2.75 16 27 C -0.12 -1.50 10.04 22.24 0.22 -1.27 16 28 C -0.06 -1.53 9.75 22.29 0.22 -1.31 16 29 C 0.10 3.46 6.83 39.42 0.27 3.73 16 30 H 0.26 14.13 6.42 -92.71 -0.59 13.54 16 31 H 0.00 0.21 7.15 -2.39 -0.02 0.19 16 32 H 0.03 1.55 6.83 -2.39 -0.02 1.53 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.87 7.31 -2.39 -0.02 1.86 16 35 H 0.04 1.58 7.49 -2.38 -0.02 1.56 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.06 1.57 7.35 -2.39 -0.02 1.55 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 41 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.04 1.82 6.87 -2.39 -0.02 1.80 16 43 H 0.40 16.57 7.00 -92.70 -0.65 15.92 16 44 H 0.21 7.57 7.46 -2.91 -0.02 7.55 16 45 H 0.27 0.02 8.06 -2.91 -0.02 0.00 16 46 H 0.22 0.34 8.06 -2.91 -0.02 0.32 16 47 H 0.17 4.17 7.18 -2.91 -0.02 4.15 16 Total: -1.00 -74.98 374.82 3.58 -71.40 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.53 Total: 24.61 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.73 Total: 10.94 kcal Atomic # 7 Polarization: -129.75 SS G_CDS: -4.67 Total: -134.42 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.07 Total: -26.42 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.06 Total: 53.88 kcal Total: -74.98 3.58 -71.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.112 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds