Wall clock time and date at job start Wed Apr 1 2020 03:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00200 * 2 1 4 4 H 1.48494 * 109.47293 * 270.00508 * 3 2 1 5 5 H 1.48503 * 109.46690 * 29.99869 * 3 2 1 6 6 H 1.48500 * 109.47351 * 149.99774 * 3 2 1 7 7 C 1.38812 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99800 * 164.50289 * 7 2 1 9 9 N 1.36938 * 120.00138 * 344.49330 * 7 2 1 10 10 C 1.47607 * 118.63899 * 331.70361 * 9 7 2 11 11 C 1.53952 * 112.14316 * 222.10850 * 10 9 7 12 12 C 1.50884 * 110.09203 * 40.56456 * 11 10 9 13 13 C 1.52565 * 109.34955 * 268.11079 * 12 11 10 14 14 C 1.47101 * 114.32724 * 85.02868 * 13 12 11 15 15 C 1.44578 * 118.64310 * 151.68157 * 9 7 2 16 16 H 1.09006 * 109.44657 * 209.32298 * 15 9 7 17 17 C 1.53002 * 109.44847 * 329.26553 * 15 9 7 18 18 N 1.46498 * 109.47386 * 305.00295 * 17 15 9 19 19 C 1.34776 * 120.00576 * 179.97438 * 18 17 15 20 20 O 1.21694 * 119.99356 * 359.97438 * 19 18 17 21 21 C 1.46810 * 120.00446 * 179.97438 * 19 18 17 22 22 C 1.40413 * 126.53730 * 0.02661 * 21 19 18 23 23 N 1.30983 * 108.76024 * 179.97438 * 22 21 19 24 24 N 1.39712 * 109.48934 * 359.97438 * 23 22 21 25 25 C 1.36350 * 133.19669 * 179.97438 * 24 23 22 26 26 C 1.35297 * 119.81086 * 180.02562 * 25 24 23 27 27 N 1.33246 * 121.27244 * 359.74618 * 26 25 24 28 28 C 1.31413 * 121.07551 * 0.52220 * 27 26 25 29 29 C 1.36817 * 107.96624 * 0.02562 * 24 23 22 30 30 H 0.96995 * 120.00083 * 0.02562 * 1 2 3 31 31 H 1.08996 * 108.95161 * 342.79843 * 10 9 7 32 32 H 1.09006 * 108.94657 * 101.51706 * 10 9 7 33 33 H 1.09001 * 109.36697 * 160.75332 * 11 10 9 34 34 H 1.08991 * 109.36853 * 280.50219 * 11 10 9 35 35 H 1.09006 * 109.48972 * 28.07472 * 12 11 10 36 36 H 1.09001 * 109.49091 * 148.12329 * 12 11 10 37 37 H 1.09000 * 108.50803 * 206.28036 * 13 12 11 38 38 H 1.08998 * 108.51109 * 323.92824 * 13 12 11 39 39 H 1.09006 * 109.32490 * 176.93406 * 14 13 12 40 40 H 1.08996 * 109.33230 * 57.45105 * 14 13 12 41 41 H 1.08999 * 109.47471 * 185.00093 * 17 15 9 42 42 H 1.09001 * 109.46659 * 64.99725 * 17 15 9 43 43 H 0.97006 * 119.99848 * 359.97438 * 18 17 15 44 44 H 1.07995 * 125.62512 * 359.97438 * 22 21 19 45 45 H 1.08003 * 120.09782 * 0.02562 * 25 24 23 46 46 H 1.07999 * 119.36645 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.18101 * 179.76113 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0608 -1.2190 -0.2505 9 7 1.3629 -2.3666 0.3160 10 6 0.2008 -2.3058 1.2241 11 6 0.2093 -3.4492 2.2549 12 6 1.6117 -3.6796 2.7618 13 6 2.2912 -4.7422 1.9034 14 6 2.9177 -4.2220 0.6784 15 6 1.8457 -3.6048 -0.2534 16 1 1.0151 -4.3022 -0.3626 17 6 2.4622 -3.3279 -1.6261 18 7 1.4839 -2.6385 -2.4708 19 6 1.8084 -2.2911 -3.7320 20 8 2.9144 -2.5497 -4.1688 21 6 0.8278 -1.6006 -4.5787 22 6 -0.4793 -1.2364 -4.2174 23 7 -1.0469 -0.6391 -5.2355 24 7 -0.1477 -0.5827 -6.3034 25 6 -0.2305 -0.0788 -7.5676 26 6 0.8318 -0.1731 -8.4002 27 7 1.9686 -0.7475 -8.0087 28 6 2.0932 -1.2518 -6.8016 29 6 1.0184 -1.1773 -5.9050 30 1 -0.4850 0.8400 -0.0004 31 1 0.2141 -1.3526 1.7526 32 1 -0.7133 -2.3700 0.6338 33 1 -0.4388 -3.1869 3.0911 34 1 -0.1578 -4.3618 1.7855 35 1 2.1767 -2.7493 2.7040 36 1 1.5731 -4.0180 3.7972 37 1 3.0582 -5.2327 2.5029 38 1 1.5468 -5.4861 1.6198 39 1 3.4227 -5.0358 0.1579 40 1 3.6485 -3.4579 0.9432 41 1 2.7458 -4.2707 -2.0939 42 1 3.3459 -2.7008 -1.5076 43 1 0.6024 -2.4319 -2.1225 44 1 -0.9407 -1.4188 -3.2581 45 1 -1.1414 0.3943 -7.9035 46 1 0.7585 0.2289 -9.3999 47 1 3.0199 -1.7175 -6.5007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968893350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:07 Heat of formation + Delta-G solvation = 85.845569 kcal Electronic energy + Delta-G solvation = -30927.261517 eV Core-core repulsion = 26919.052988 eV Total energy + Delta-G solvation = -4008.208529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.58085 -40.55756 -39.57496 -39.11896 -35.92914 -35.16174 -34.74605 -33.20764 -32.44912 -32.40936 -30.56812 -28.51055 -27.24809 -25.89133 -25.20202 -24.96354 -23.73479 -23.15548 -21.44894 -20.90705 -20.74920 -19.56423 -18.46982 -18.26190 -17.50999 -17.27145 -17.12395 -16.84669 -16.20117 -16.13690 -16.06019 -15.87745 -15.50897 -15.17414 -14.87385 -14.52144 -14.45545 -14.22999 -14.02933 -13.99123 -13.65300 -13.33954 -13.11336 -12.88751 -12.80744 -12.68009 -12.38483 -12.35449 -11.99681 -11.96488 -11.49641 -11.35674 -11.27633 -11.15490 -11.12000 -11.03781 -10.96902 -10.77658 -10.32110 -9.77684 -8.94792 -8.49722 -7.76739 -5.18014 -0.72157 -0.30034 0.84882 0.98615 1.38970 1.45775 1.49327 2.14868 2.41364 2.55168 2.61073 2.98998 3.12792 3.24708 3.39006 3.65346 3.69752 3.91089 4.02819 4.08870 4.15063 4.28839 4.31927 4.39389 4.46567 4.52923 4.58903 4.67154 4.73743 4.90029 5.03718 5.05853 5.10239 5.14547 5.18294 5.31215 5.31698 5.37345 5.43433 5.47513 5.60446 5.71237 5.75560 5.80997 5.85535 5.95043 6.11118 6.48048 6.51424 6.83711 7.31282 7.44520 8.05442 8.43492 9.26509 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.003653 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.688623 B = 7662.735046 C = 8440.103618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.021 4.021 3 Si 0.922 3.078 4 H -0.304 1.304 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.047 0.953 9 N -0.587 5.587 10 C 0.190 3.810 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.100 4.100 14 C -0.129 4.129 15 C 0.173 3.827 16 H 0.058 0.942 17 C 0.135 3.865 18 N -0.684 5.684 19 C 0.589 3.411 20 O -0.595 6.595 21 C -0.293 4.293 22 C 0.128 3.872 23 N -0.323 5.323 24 N -0.251 5.251 25 C 0.065 3.935 26 C 0.032 3.968 27 N -0.448 5.448 28 C 0.149 3.851 29 C 0.080 3.920 30 H 0.244 0.756 31 H 0.037 0.963 32 H 0.006 0.994 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.407 0.593 44 H 0.211 0.789 45 H 0.222 0.778 46 H 0.235 0.765 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 -6.089 -9.450 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.217 4.217 3 Si 0.754 3.246 4 H -0.233 1.233 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.065 0.935 9 N -0.310 5.310 10 C 0.065 3.935 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.169 4.169 15 C 0.066 3.934 16 H 0.076 0.924 17 C 0.011 3.989 18 N -0.331 5.331 19 C 0.377 3.623 20 O -0.479 6.479 21 C -0.311 4.311 22 C -0.050 4.050 23 N -0.147 5.147 24 N -0.018 5.018 25 C -0.063 4.063 26 C -0.110 4.110 27 N -0.159 5.159 28 C -0.028 4.028 29 C -0.044 4.044 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.243 0.757 44 H 0.227 0.773 45 H 0.238 0.762 46 H 0.251 0.749 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.400 -5.554 -10.721 12.310 hybrid contribution 0.069 1.350 1.392 1.940 sum -2.331 -4.204 -9.329 10.495 Atomic orbital electron populations 1.70071 1.05105 1.24737 1.56045 1.25141 0.95528 0.98929 1.02145 0.85997 0.78762 0.83412 0.76448 1.23268 1.22187 1.20701 1.18915 0.91575 0.85669 1.39648 0.93502 1.43768 1.34137 1.01852 1.51195 1.20777 0.87613 0.95519 0.89601 1.21944 0.97105 0.99342 0.98753 1.20910 0.96049 0.98911 0.98273 1.20273 0.99840 0.97654 0.95982 1.21290 0.98562 0.99794 0.97273 1.20683 0.94954 0.88271 0.89526 0.92373 1.21471 0.91540 0.95301 0.90627 1.45433 1.18277 1.58085 1.11331 1.17034 0.85655 0.77872 0.81717 1.90664 1.23494 1.58816 1.74937 1.19851 0.97714 1.18769 0.94761 1.24411 0.91945 0.90734 0.97864 1.77640 1.13381 1.29010 0.94643 1.46565 1.09662 1.34405 1.11194 1.23558 1.05021 0.98251 0.79516 1.23277 0.86237 0.99074 1.02451 1.68293 1.25618 1.06961 1.15051 1.23192 0.97164 0.95494 0.86999 1.20496 0.89940 0.98150 0.95768 0.94604 0.94473 0.97615 0.92211 0.92129 0.93965 0.92007 0.92090 0.91987 0.90827 0.93996 0.91335 0.93918 0.75669 0.77278 0.76178 0.74930 0.79465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.80 11.13 21.65 0.24 -47.56 16 2 C -0.02 -1.07 4.86 84.86 0.41 -0.66 16 3 Si 0.92 44.65 29.58 68.60 2.03 46.68 16 4 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.23 -11.10 7.62 84.03 0.64 -10.46 16 8 H 0.05 2.44 6.74 -2.91 -0.02 2.42 16 9 N -0.59 -24.65 1.77 -674.22 -1.20 -25.84 16 10 C 0.19 7.92 4.66 86.49 0.40 8.32 16 11 C -0.13 -4.30 5.71 30.23 0.17 -4.13 16 12 C -0.10 -3.19 5.51 29.76 0.16 -3.03 16 13 C -0.10 -2.72 5.16 28.62 0.15 -2.58 16 14 C -0.13 -3.94 5.06 29.40 0.15 -3.79 16 15 C 0.17 6.08 2.19 45.99 0.10 6.18 16 16 H 0.06 1.93 8.06 -2.38 -0.02 1.91 16 17 C 0.14 5.00 4.52 86.38 0.39 5.39 16 18 N -0.68 -26.49 4.71 -466.94 -2.20 -28.68 16 19 C 0.59 23.68 7.79 86.49 0.67 24.35 16 20 O -0.60 -26.03 15.81 -4.33 -0.07 -26.09 16 21 C -0.29 -10.73 6.16 -19.95 -0.12 -10.86 16 22 C 0.13 4.40 11.44 85.35 0.98 5.38 16 23 N -0.32 -10.53 12.60 -56.59 -0.71 -11.24 16 24 N -0.25 -7.22 3.91 -187.15 -0.73 -7.96 16 25 C 0.07 1.19 11.24 83.31 0.94 2.13 16 26 C 0.03 0.52 11.07 83.80 0.93 1.45 16 27 N -0.45 -10.68 10.44 -195.85 -2.05 -12.72 16 28 C 0.15 4.33 10.98 85.22 0.94 5.27 16 29 C 0.08 2.62 6.77 39.39 0.27 2.88 16 30 H 0.24 12.93 8.31 -92.71 -0.77 12.16 16 31 H 0.04 1.81 6.47 -2.39 -0.02 1.79 16 32 H 0.01 0.26 8.02 -2.38 -0.02 0.24 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.79 7.31 -2.39 -0.02 1.77 16 35 H 0.04 1.57 7.48 -2.38 -0.02 1.56 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.54 7.35 -2.39 -0.02 1.52 16 39 H 0.07 1.92 8.11 -2.38 -0.02 1.90 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.04 1.80 6.84 -2.39 -0.02 1.79 16 43 H 0.41 16.07 7.00 -92.70 -0.65 15.42 16 44 H 0.21 6.82 7.46 -2.91 -0.02 6.80 16 45 H 0.22 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 47 H 0.19 5.60 7.20 -2.91 -0.02 5.58 16 Total: -1.00 -64.88 375.20 2.84 -62.04 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.35 Total: 25.53 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 7.17 Total: 25.85 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -6.64 Total: -134.01 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.07 Total: -26.09 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.88 2.84 -62.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.883 kcal (2) G-P(sol) polarization free energy of solvation -64.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds