Wall clock time and date at job start Wed Apr 1 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00277 * 2 1 4 4 H 1.48502 * 109.46748 * 85.60932 * 3 2 1 5 5 H 1.48502 * 109.46873 * 325.61252 * 3 2 1 6 6 H 1.48498 * 109.47083 * 205.60863 * 3 2 1 7 7 C 1.38814 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99898 * 195.61753 * 7 2 1 9 9 N 1.36932 * 120.00285 * 15.61411 * 7 2 1 10 10 C 1.47605 * 118.63972 * 28.13749 * 9 7 2 11 11 C 1.54295 * 111.94015 * 137.78370 * 10 9 7 12 12 C 1.50881 * 110.23547 * 319.69689 * 11 10 9 13 13 C 1.52562 * 109.35788 * 91.80065 * 12 11 10 14 14 C 1.47092 * 114.32995 * 274.98951 * 13 12 11 15 15 C 1.44581 * 118.64511 * 208.41079 * 9 7 2 16 16 H 1.09003 * 109.45102 * 150.66188 * 15 9 7 17 17 C 1.52995 * 109.45063 * 30.71622 * 15 9 7 18 18 N 1.46495 * 109.47585 * 55.00093 * 17 15 9 19 19 C 1.34774 * 120.00452 * 179.97438 * 18 17 15 20 20 O 1.21684 * 119.99723 * 0.02562 * 19 18 17 21 21 C 1.46808 * 120.00171 * 179.97438 * 19 18 17 22 22 C 1.40414 * 126.54391 * 0.03411 * 21 19 18 23 23 N 1.30968 * 108.76807 * 179.97438 * 22 21 19 24 24 N 1.39715 * 109.48950 * 359.97438 * 23 22 21 25 25 C 1.36355 * 133.19242 * 180.02562 * 24 23 22 26 26 C 1.35298 * 119.80014 * 179.30760 * 25 24 23 27 27 N 1.33248 * 121.27801 * 0.56729 * 26 25 24 28 28 C 1.31404 * 121.07415 * 359.63010 * 27 26 25 29 29 C 1.36817 * 107.96539 * 359.74915 * 24 23 22 30 30 H 0.97000 * 119.99939 * 0.02562 * 1 2 3 31 31 H 1.09006 * 108.94748 * 258.57539 * 10 9 7 32 32 H 1.08997 * 108.94902 * 17.20339 * 10 9 7 33 33 H 1.09001 * 109.36488 * 199.41978 * 11 10 9 34 34 H 1.09000 * 109.22991 * 79.88825 * 11 10 9 35 35 H 1.08996 * 109.48761 * 331.83749 * 12 11 10 36 36 H 1.09003 * 109.48957 * 211.76635 * 12 11 10 37 37 H 1.09006 * 108.51380 * 153.73353 * 13 12 11 38 38 H 1.08999 * 108.39434 * 36.15358 * 13 12 11 39 39 H 1.08999 * 109.32553 * 302.54540 * 14 13 12 40 40 H 1.08994 * 109.19306 * 182.97241 * 14 13 12 41 41 H 1.09001 * 109.47231 * 175.00291 * 17 15 9 42 42 H 1.09008 * 109.46967 * 294.99885 * 17 15 9 43 43 H 0.97010 * 119.99745 * 0.02562 * 18 17 15 44 44 H 1.08003 * 125.61348 * 359.96709 * 22 21 19 45 45 H 1.07997 * 120.10044 * 359.94550 * 25 24 23 46 46 H 1.08004 * 119.36024 * 180.17819 * 26 25 24 47 47 H 1.08006 * 120.17850 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4049 2.0999 1.3960 5 1 1.4972 2.6241 -0.7908 6 1 3.5911 1.4151 -0.6051 7 6 2.0102 -1.2022 0.0005 8 1 3.0604 -1.2194 0.2524 9 7 1.3634 -2.3663 -0.3181 10 6 0.2006 -2.3042 -1.2252 11 6 0.2152 -3.4482 -2.2604 12 6 1.6189 -3.6791 -2.7633 13 6 2.2959 -4.7419 -1.9032 14 6 2.9186 -4.2221 -0.6762 15 6 1.8440 -3.6048 0.2525 16 1 1.0129 -4.3018 0.3593 17 6 2.4569 -3.3285 1.6268 18 7 1.4767 -2.6387 2.4691 19 6 1.7977 -2.2925 3.7314 20 8 2.9019 -2.5526 4.1715 21 6 0.8155 -1.6007 4.5752 22 6 -0.4901 -1.2350 4.2102 23 7 -1.0602 -0.6378 5.2269 24 7 -0.1647 -0.5840 6.2980 25 6 -0.2512 -0.0812 7.5625 26 6 0.8034 -0.1903 8.4030 27 7 1.9381 -0.7726 8.0173 28 6 2.0691 -1.2681 6.8074 29 6 1.0000 -1.1846 5.9047 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7131 -2.3687 -0.6342 32 1 0.2130 -1.3499 -1.7516 33 1 -0.4303 -3.1856 -3.0985 34 1 -0.1557 -4.3603 -1.7928 35 1 2.1841 -2.7490 -2.7038 36 1 1.5832 -4.0177 -3.7988 37 1 3.0645 -5.2324 -2.5004 38 1 1.5492 -5.4853 -1.6241 39 1 3.6504 -3.4581 -0.9388 40 1 3.4198 -5.0379 -0.1555 41 1 2.7388 -4.2715 2.0952 42 1 3.3413 -2.7018 1.5109 43 1 0.5962 -2.4316 2.1183 44 1 -0.9486 -1.4161 3.2493 45 1 -1.1623 0.3935 7.8954 46 1 0.7261 0.2079 9.4040 47 1 2.9953 -1.7375 6.5101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968893354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:13 Heat of formation + Delta-G solvation = 102.580636 kcal Electronic energy + Delta-G solvation = -30926.063347 eV Core-core repulsion = 26918.580505 eV Total energy + Delta-G solvation = -4007.482842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.43040 -39.10973 -38.30179 -37.75592 -34.45880 -33.61871 -33.46970 -31.77051 -31.27792 -30.70676 -29.37024 -26.97206 -25.69132 -24.81630 -23.79806 -23.43120 -22.48932 -21.76596 -20.02559 -19.54878 -19.18848 -18.33726 -17.37714 -16.85223 -16.06964 -15.93752 -15.63751 -15.53017 -15.02082 -14.77710 -14.62142 -14.26776 -13.98816 -13.57050 -13.46744 -13.32282 -13.14402 -12.98958 -12.77308 -12.72449 -12.08324 -11.94368 -11.49731 -11.27190 -11.13810 -11.07906 -10.84862 -10.81261 -10.60111 -10.21703 -10.07561 -10.03261 -9.98755 -9.80790 -9.71554 -9.60300 -9.55256 -9.31332 -8.43621 -8.26985 -7.78050 -6.71459 -5.84851 -3.28308 0.35436 0.80110 1.92836 2.29380 3.22847 3.34862 3.43169 3.46012 3.75695 3.97616 4.10800 4.21903 4.23550 4.46979 4.83948 4.88960 5.12758 5.19796 5.33183 5.34902 5.38174 5.43461 5.49257 5.64482 5.73231 5.90377 6.01331 6.08311 6.10907 6.15501 6.27780 6.35568 6.38463 6.46585 6.56595 6.62461 6.65317 6.70197 6.76215 6.83564 6.99193 7.10491 7.26470 7.31594 7.38728 7.50634 7.63929 7.81676 8.34525 8.41239 8.94145 9.18942 9.83384 10.28569 11.21958 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.003653 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.980209 B = 7662.831829 C = 8443.199678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.014 3.986 3 Si 0.889 3.111 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.132 3.868 18 N -0.683 5.683 19 C 0.591 3.409 20 O -0.570 6.570 21 C -0.255 4.255 22 C 0.127 3.873 23 N -0.306 5.306 24 N -0.253 5.253 25 C 0.064 3.936 26 C 0.019 3.981 27 N -0.452 5.452 28 C 0.172 3.828 29 C 0.084 3.916 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.410 0.590 44 H 0.210 0.790 45 H 0.178 0.822 46 H 0.183 0.817 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -5.088 8.052 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.184 4.184 3 Si 0.719 3.281 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.081 0.919 9 N -0.306 5.306 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.063 0.937 17 C 0.007 3.993 18 N -0.331 5.331 19 C 0.378 3.622 20 O -0.452 6.452 21 C -0.273 4.273 22 C -0.052 4.052 23 N -0.129 5.129 24 N -0.021 5.021 25 C -0.065 4.065 26 C -0.123 4.123 27 N -0.164 5.164 28 C -0.007 4.007 29 C -0.038 4.038 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.246 0.754 44 H 0.226 0.774 45 H 0.196 0.804 46 H 0.199 0.801 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.864 -4.527 9.368 10.571 hybrid contribution -0.125 0.986 -1.207 1.563 sum -1.989 -3.541 8.162 9.116 Atomic orbital electron populations 1.70004 1.04928 1.25346 1.54424 1.24869 0.95111 0.97821 1.00637 0.86494 0.79507 0.84549 0.77545 1.21727 1.21757 1.20530 1.19016 0.92337 0.84614 1.41709 0.91940 1.43734 1.34428 1.01679 1.50743 1.21064 0.88499 0.95496 0.89337 1.22119 0.96053 1.00479 0.99553 1.20939 0.97084 0.99822 0.96559 1.20290 0.98993 0.97906 0.96650 1.21370 0.99692 0.99756 0.96875 1.20518 0.94063 0.89399 0.89613 0.93738 1.21484 0.92483 0.95186 0.90148 1.45408 1.18482 1.57966 1.11228 1.16762 0.85614 0.78232 0.81608 1.90699 1.22563 1.57573 1.74316 1.20004 0.97451 1.16196 0.93625 1.24421 0.92175 0.90956 0.97626 1.77703 1.13013 1.28098 0.94111 1.46252 1.10575 1.35036 1.10241 1.22576 1.03040 0.99652 0.81280 1.22352 0.88097 1.01089 1.00741 1.68259 1.23842 1.07938 1.16329 1.23325 0.97481 0.93663 0.86246 1.20374 0.89162 0.98346 0.95953 0.93778 0.95721 0.90919 0.93338 0.93825 0.90768 0.94253 0.94122 0.93549 0.91782 0.93281 0.93051 0.91267 0.75409 0.77391 0.80445 0.80051 0.78751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.81 11.13 55.49 0.62 -22.19 16 2 C 0.01 0.35 4.86 -17.43 -0.08 0.27 16 3 Si 0.89 21.07 29.58 -169.99 -5.03 16.04 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -5.85 7.62 -15.06 -0.11 -5.96 16 8 H 0.06 1.56 6.75 -52.48 -0.35 1.21 16 9 N -0.58 -12.07 1.77 -164.25 -0.29 -12.36 16 10 C 0.18 3.73 4.70 -2.76 -0.01 3.72 16 11 C -0.14 -2.44 5.71 -27.12 -0.15 -2.59 16 12 C -0.11 -1.74 5.51 -28.02 -0.15 -1.89 16 13 C -0.10 -1.52 5.16 -29.79 -0.15 -1.68 16 14 C -0.14 -2.19 5.06 -28.58 -0.14 -2.34 16 15 C 0.17 3.08 2.19 -67.97 -0.15 2.93 16 16 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 17 C 0.13 2.40 4.52 -4.05 -0.02 2.38 16 18 N -0.68 -12.76 4.71 -61.58 -0.29 -13.05 16 19 C 0.59 11.37 7.79 -12.80 -0.10 11.27 16 20 O -0.57 -11.93 15.81 5.20 0.08 -11.85 16 21 C -0.25 -4.49 6.16 -104.75 -0.65 -5.13 16 22 C 0.13 2.10 11.44 -17.10 -0.20 1.91 16 23 N -0.31 -5.02 12.60 30.76 0.39 -4.63 16 24 N -0.25 -3.80 3.91 -10.50 -0.04 -3.84 16 25 C 0.06 0.69 11.25 -16.59 -0.19 0.50 16 26 C 0.02 0.19 11.07 -17.98 -0.20 -0.01 16 27 N -0.45 -5.87 10.44 -13.25 -0.14 -6.01 16 28 C 0.17 2.51 10.98 -17.01 -0.19 2.33 16 29 C 0.08 1.37 6.77 -84.06 -0.57 0.80 16 30 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.02 0.54 8.02 -51.93 -0.42 0.13 16 32 H 0.07 1.73 6.46 -51.93 -0.34 1.39 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.70 7.31 -51.93 -0.38 0.32 16 35 H 0.07 1.41 7.49 -51.93 -0.39 1.02 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.41 6.84 -51.92 -0.36 1.06 16 43 H 0.41 7.77 7.00 -40.82 -0.29 7.49 16 44 H 0.21 3.20 7.46 -52.48 -0.39 2.81 16 45 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.18 1.07 8.06 -52.48 -0.42 0.64 16 47 H 0.20 2.77 7.21 -52.48 -0.38 2.39 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -28.50 375.24 -8.72 -37.22 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.60 Total: 8.51 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -3.07 Total: 6.51 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.25 Total: -62.08 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.50 -8.72 -37.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.797 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds