Wall clock time and date at job start Wed Apr 1 2020 03:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00277 * 2 1 4 4 H 1.48502 * 109.46748 * 85.60932 * 3 2 1 5 5 H 1.48502 * 109.46873 * 325.61252 * 3 2 1 6 6 H 1.48498 * 109.47083 * 205.60863 * 3 2 1 7 7 C 1.38814 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99898 * 195.61753 * 7 2 1 9 9 N 1.36932 * 120.00285 * 15.61411 * 7 2 1 10 10 C 1.47605 * 118.63972 * 28.13749 * 9 7 2 11 11 C 1.54295 * 111.94015 * 137.78370 * 10 9 7 12 12 C 1.50881 * 110.23547 * 319.69689 * 11 10 9 13 13 C 1.52562 * 109.35788 * 91.80065 * 12 11 10 14 14 C 1.47092 * 114.32995 * 274.98951 * 13 12 11 15 15 C 1.44581 * 118.64511 * 208.41079 * 9 7 2 16 16 H 1.09003 * 109.45102 * 150.66188 * 15 9 7 17 17 C 1.52995 * 109.45063 * 30.71622 * 15 9 7 18 18 N 1.46495 * 109.47585 * 55.00093 * 17 15 9 19 19 C 1.34774 * 120.00452 * 179.97438 * 18 17 15 20 20 O 1.21684 * 119.99723 * 0.02562 * 19 18 17 21 21 C 1.46808 * 120.00171 * 179.97438 * 19 18 17 22 22 C 1.40414 * 126.54391 * 0.03411 * 21 19 18 23 23 N 1.30968 * 108.76807 * 179.97438 * 22 21 19 24 24 N 1.39715 * 109.48950 * 359.97438 * 23 22 21 25 25 C 1.36355 * 133.19242 * 180.02562 * 24 23 22 26 26 C 1.35298 * 119.80014 * 179.30760 * 25 24 23 27 27 N 1.33248 * 121.27801 * 0.56729 * 26 25 24 28 28 C 1.31404 * 121.07415 * 359.63010 * 27 26 25 29 29 C 1.36817 * 107.96539 * 359.74915 * 24 23 22 30 30 H 0.97000 * 119.99939 * 0.02562 * 1 2 3 31 31 H 1.09006 * 108.94748 * 258.57539 * 10 9 7 32 32 H 1.08997 * 108.94902 * 17.20339 * 10 9 7 33 33 H 1.09001 * 109.36488 * 199.41978 * 11 10 9 34 34 H 1.09000 * 109.22991 * 79.88825 * 11 10 9 35 35 H 1.08996 * 109.48761 * 331.83749 * 12 11 10 36 36 H 1.09003 * 109.48957 * 211.76635 * 12 11 10 37 37 H 1.09006 * 108.51380 * 153.73353 * 13 12 11 38 38 H 1.08999 * 108.39434 * 36.15358 * 13 12 11 39 39 H 1.08999 * 109.32553 * 302.54540 * 14 13 12 40 40 H 1.08994 * 109.19306 * 182.97241 * 14 13 12 41 41 H 1.09001 * 109.47231 * 175.00291 * 17 15 9 42 42 H 1.09008 * 109.46967 * 294.99885 * 17 15 9 43 43 H 0.97010 * 119.99745 * 0.02562 * 18 17 15 44 44 H 1.08003 * 125.61348 * 359.96709 * 22 21 19 45 45 H 1.07997 * 120.10044 * 359.94550 * 25 24 23 46 46 H 1.08004 * 119.36024 * 180.17819 * 26 25 24 47 47 H 1.08006 * 120.17850 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4049 2.0999 1.3960 5 1 1.4972 2.6241 -0.7908 6 1 3.5911 1.4151 -0.6051 7 6 2.0102 -1.2022 0.0005 8 1 3.0604 -1.2194 0.2524 9 7 1.3634 -2.3663 -0.3181 10 6 0.2006 -2.3042 -1.2252 11 6 0.2152 -3.4482 -2.2604 12 6 1.6189 -3.6791 -2.7633 13 6 2.2959 -4.7419 -1.9032 14 6 2.9186 -4.2221 -0.6762 15 6 1.8440 -3.6048 0.2525 16 1 1.0129 -4.3018 0.3593 17 6 2.4569 -3.3285 1.6268 18 7 1.4767 -2.6387 2.4691 19 6 1.7977 -2.2925 3.7314 20 8 2.9019 -2.5526 4.1715 21 6 0.8155 -1.6007 4.5752 22 6 -0.4901 -1.2350 4.2102 23 7 -1.0602 -0.6378 5.2269 24 7 -0.1647 -0.5840 6.2980 25 6 -0.2512 -0.0812 7.5625 26 6 0.8034 -0.1903 8.4030 27 7 1.9381 -0.7726 8.0173 28 6 2.0691 -1.2681 6.8074 29 6 1.0000 -1.1846 5.9047 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7131 -2.3687 -0.6342 32 1 0.2130 -1.3499 -1.7516 33 1 -0.4303 -3.1856 -3.0985 34 1 -0.1557 -4.3603 -1.7928 35 1 2.1841 -2.7490 -2.7038 36 1 1.5832 -4.0177 -3.7988 37 1 3.0645 -5.2324 -2.5004 38 1 1.5492 -5.4853 -1.6241 39 1 3.6504 -3.4581 -0.9388 40 1 3.4198 -5.0379 -0.1555 41 1 2.7388 -4.2715 2.0952 42 1 3.3413 -2.7018 1.5109 43 1 0.5962 -2.4316 2.1183 44 1 -0.9486 -1.4161 3.2493 45 1 -1.1623 0.3935 7.8954 46 1 0.7261 0.2079 9.4040 47 1 2.9953 -1.7375 6.5101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968893354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:11 Heat of formation + Delta-G solvation = 85.901780 kcal Electronic energy + Delta-G solvation = -30926.786596 eV Core-core repulsion = 26918.580505 eV Total energy + Delta-G solvation = -4008.206091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.58096 -40.55696 -39.57043 -39.11783 -35.92485 -35.16257 -34.74601 -33.19668 -32.44680 -32.40731 -30.56731 -28.50629 -27.24874 -25.89127 -25.19825 -24.96334 -23.73497 -23.15767 -21.44682 -20.90619 -20.74980 -19.56434 -18.46946 -18.26182 -17.50987 -17.27188 -17.12212 -16.84704 -16.19996 -16.13643 -16.05880 -15.87465 -15.50820 -15.16791 -14.87445 -14.52209 -14.45514 -14.22846 -14.03042 -13.99045 -13.65444 -13.33336 -13.11211 -12.88842 -12.81013 -12.68347 -12.38344 -12.34912 -11.99561 -11.96377 -11.49608 -11.35324 -11.27526 -11.15020 -11.12034 -11.04115 -10.96944 -10.77850 -10.31900 -9.77660 -8.94779 -8.49957 -7.76699 -5.17920 -0.72127 -0.30037 0.84925 0.98604 1.38716 1.45880 1.49576 2.14940 2.41306 2.55199 2.61168 2.99036 3.12801 3.24681 3.39049 3.65440 3.69716 3.91098 4.02816 4.08920 4.15201 4.28851 4.31955 4.39362 4.46417 4.52883 4.59079 4.67415 4.73526 4.90078 5.03711 5.05782 5.10242 5.14524 5.18365 5.31182 5.31832 5.37359 5.43573 5.47533 5.60429 5.71322 5.75567 5.81198 5.85563 5.95222 6.11126 6.48061 6.51433 6.83704 7.31255 7.44525 8.05435 8.43514 9.26451 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.003653 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.980209 B = 7662.831829 C = 8443.199678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.021 4.021 3 Si 0.922 3.078 4 H -0.305 1.305 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.047 0.953 9 N -0.587 5.587 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.128 4.128 15 C 0.173 3.827 16 H 0.058 0.942 17 C 0.135 3.865 18 N -0.684 5.684 19 C 0.589 3.411 20 O -0.595 6.595 21 C -0.293 4.293 22 C 0.128 3.872 23 N -0.323 5.323 24 N -0.251 5.251 25 C 0.065 3.935 26 C 0.032 3.968 27 N -0.448 5.448 28 C 0.149 3.851 29 C 0.080 3.920 30 H 0.244 0.756 31 H 0.006 0.994 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.042 0.958 43 H 0.407 0.593 44 H 0.211 0.789 45 H 0.222 0.778 46 H 0.235 0.765 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 -6.110 9.438 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.754 3.246 4 H -0.234 1.234 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.065 0.935 9 N -0.310 5.310 10 C 0.065 3.935 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.169 4.169 15 C 0.066 3.934 16 H 0.076 0.924 17 C 0.010 3.990 18 N -0.331 5.331 19 C 0.377 3.623 20 O -0.479 6.479 21 C -0.311 4.311 22 C -0.050 4.050 23 N -0.147 5.147 24 N -0.018 5.018 25 C -0.063 4.063 26 C -0.110 4.110 27 N -0.159 5.159 28 C -0.028 4.028 29 C -0.044 4.044 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.243 0.757 44 H 0.227 0.773 45 H 0.238 0.762 46 H 0.251 0.749 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.421 -5.585 10.711 12.320 hybrid contribution 0.064 1.362 -1.391 1.948 sum -2.357 -4.223 9.319 10.500 Atomic orbital electron populations 1.70074 1.05104 1.24718 1.56076 1.25140 0.95527 0.98928 1.02167 0.85982 0.78853 0.83481 0.76314 1.23355 1.22168 1.20657 1.18925 0.91612 0.85678 1.39547 0.93490 1.43777 1.34155 1.01857 1.51174 1.20853 0.87586 0.95531 0.89570 1.21993 0.97082 0.99334 0.98722 1.20902 0.96033 0.98920 0.98266 1.20275 0.99848 0.97655 0.95983 1.21285 0.98570 0.99769 0.97263 1.20683 0.94978 0.88277 0.89503 0.92378 1.21474 0.91511 0.95295 0.90676 1.45434 1.18336 1.58095 1.11269 1.17029 0.85644 0.77877 0.81721 1.90661 1.23625 1.58798 1.74812 1.19855 0.97802 1.18827 0.94618 1.24408 0.91897 0.90758 0.97895 1.77635 1.13471 1.29029 0.94540 1.46568 1.09810 1.34274 1.11186 1.23559 1.05024 0.98331 0.79434 1.23278 0.86415 0.98955 1.02391 1.68291 1.25335 1.07036 1.15252 1.23192 0.97201 0.95559 0.86892 1.20499 0.89981 0.98116 0.95756 0.94608 0.97552 0.94459 0.92255 0.92162 0.93949 0.92007 0.92090 0.92001 0.93962 0.90829 0.91343 0.93914 0.75672 0.77287 0.76184 0.74930 0.79453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.79 11.13 21.65 0.24 -47.55 16 2 C -0.02 -1.09 4.86 84.86 0.41 -0.67 16 3 Si 0.92 44.65 29.58 68.60 2.03 46.68 16 4 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.23 -11.07 7.62 84.03 0.64 -10.43 16 8 H 0.05 2.45 6.75 -2.91 -0.02 2.43 16 9 N -0.59 -24.64 1.77 -673.56 -1.19 -25.83 16 10 C 0.19 7.91 4.70 86.61 0.41 8.31 16 11 C -0.13 -4.30 5.71 30.34 0.17 -4.13 16 12 C -0.10 -3.18 5.51 29.76 0.16 -3.02 16 13 C -0.10 -2.73 5.16 28.61 0.15 -2.58 16 14 C -0.13 -3.93 5.06 29.39 0.15 -3.78 16 15 C 0.17 6.08 2.19 45.99 0.10 6.18 16 16 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 17 C 0.14 5.00 4.52 86.38 0.39 5.39 16 18 N -0.68 -26.49 4.71 -466.96 -2.20 -28.69 16 19 C 0.59 23.68 7.79 86.48 0.67 24.35 16 20 O -0.60 -26.01 15.81 -4.30 -0.07 -26.08 16 21 C -0.29 -10.74 6.16 -19.95 -0.12 -10.86 16 22 C 0.13 4.40 11.44 85.35 0.98 5.38 16 23 N -0.32 -10.54 12.60 -56.59 -0.71 -11.25 16 24 N -0.25 -7.23 3.91 -187.14 -0.73 -7.96 16 25 C 0.07 1.19 11.25 83.31 0.94 2.13 16 26 C 0.03 0.52 11.07 83.80 0.93 1.45 16 27 N -0.45 -10.66 10.44 -195.85 -2.05 -12.71 16 28 C 0.15 4.33 10.98 85.22 0.94 5.26 16 29 C 0.08 2.62 6.77 39.39 0.27 2.88 16 30 H 0.24 12.91 8.31 -92.71 -0.77 12.14 16 31 H 0.01 0.29 8.02 -2.38 -0.02 0.27 16 32 H 0.04 1.81 6.46 -2.39 -0.02 1.80 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.78 7.31 -2.39 -0.02 1.76 16 35 H 0.04 1.58 7.49 -2.39 -0.02 1.56 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.06 1.54 7.35 -2.39 -0.02 1.52 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.04 1.81 6.84 -2.38 -0.02 1.79 16 43 H 0.41 16.08 7.00 -92.70 -0.65 15.43 16 44 H 0.21 6.83 7.46 -2.91 -0.02 6.81 16 45 H 0.22 2.04 8.06 -2.91 -0.02 2.01 16 46 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 47 H 0.19 5.59 7.21 -2.91 -0.02 5.57 16 Total: -1.00 -64.84 375.24 2.86 -61.99 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.35 Total: 25.53 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 7.18 Total: 25.86 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -6.64 Total: -133.98 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.07 Total: -26.08 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.84 2.86 -61.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.888 kcal (2) G-P(sol) polarization free energy of solvation -64.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds