Wall clock time and date at job start Wed Apr 1 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35984 * 117.00164 * 2 1 4 4 C 1.39380 * 119.82243 * 359.73246 * 3 2 1 5 5 C 1.37597 * 120.60444 * 179.69571 * 4 3 2 6 6 C 1.39210 * 120.02374 * 0.59405 * 5 4 3 7 7 N 1.37666 * 133.03296 * 179.71088 * 6 5 4 8 8 H 0.97006 * 125.61350 * 0.02562 * 7 6 5 9 9 C 1.38110 * 108.77293 * 179.97438 * 7 6 5 10 10 C 1.47056 * 125.43279 * 180.02562 * 9 7 6 11 11 O 1.21647 * 120.00138 * 179.97438 * 10 9 7 12 12 N 1.34780 * 119.99917 * 359.97438 * 10 9 7 13 13 C 1.46495 * 120.00021 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46856 * 185.12632 * 13 12 10 15 15 H 1.09001 * 109.87796 * 303.57204 * 14 13 12 16 16 C 1.54321 * 109.88316 * 64.59048 * 14 13 12 17 17 C 1.55159 * 102.94486 * 141.60848 * 16 14 13 18 18 C 1.54916 * 101.58064 * 324.49847 * 17 16 14 19 19 N 1.47031 * 109.88225 * 182.39809 * 14 13 12 20 20 C 1.36936 * 125.64591 * 61.62454 * 19 14 13 21 21 H 1.08002 * 120.00198 * 14.75836 * 20 19 14 22 22 C 1.38818 * 119.99481 * 194.75870 * 20 19 14 23 23 N 1.31611 * 120.00066 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99424 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47880 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47129 * 120.00132 * 24 22 20 27 27 H 1.48499 * 109.47203 * 239.99896 * 24 22 20 28 28 C 1.35881 * 109.14229 * 0.02562 * 9 7 6 29 29 C 1.40814 * 119.61453 * 359.68567 * 6 5 4 30 30 C 1.37842 * 119.82084 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47325 * 59.99707 * 1 2 3 32 32 H 1.09005 * 109.46875 * 299.99679 * 1 2 3 33 33 H 1.08997 * 109.47071 * 179.97438 * 1 2 3 34 34 H 1.08006 * 119.69285 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.98842 * 180.27927 * 5 4 3 36 36 H 0.97005 * 119.99520 * 359.97438 * 12 10 9 37 37 H 1.08998 * 109.47509 * 305.13047 * 13 12 10 38 38 H 1.09003 * 109.46975 * 65.13122 * 13 12 10 39 39 H 1.09000 * 110.72509 * 259.97221 * 16 14 13 40 40 H 1.09004 * 110.72195 * 23.24883 * 16 14 13 41 41 H 1.08998 * 111.00720 * 82.57255 * 17 16 14 42 42 H 1.09002 * 111.00724 * 206.42721 * 17 16 14 43 43 H 1.08996 * 110.36648 * 155.84662 * 18 17 16 44 44 H 1.08997 * 110.36805 * 278.06107 * 18 17 16 45 45 H 0.97003 * 119.99813 * 180.02562 * 23 22 20 46 46 H 1.08006 * 126.12471 * 179.97438 * 28 9 7 47 47 H 1.07995 * 120.16747 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2837 2.3782 -0.0056 5 6 1.8916 3.6126 0.0006 6 6 3.2806 3.7050 0.0001 7 7 4.1512 4.7714 0.0001 8 1 3.8976 5.7077 0.0009 9 6 5.4453 4.2888 0.0001 10 6 6.6628 5.1135 0.0006 11 8 7.7572 4.5825 0.0010 12 7 6.5661 6.4579 0.0007 13 6 7.7789 7.2795 0.0019 14 6 7.3952 8.7549 0.1306 15 1 6.7122 9.0317 -0.6725 16 6 6.7262 9.0058 1.4984 17 6 7.2852 10.3936 1.9095 18 6 8.7271 10.3271 1.3471 19 7 8.6025 9.5923 0.0751 20 6 9.4681 9.6754 -0.9827 21 1 9.1772 9.2927 -1.9499 22 6 10.7194 10.2516 -0.8119 23 7 11.0741 10.7174 0.3668 24 14 11.9004 10.3644 -2.2548 25 1 11.2670 9.7726 -3.4605 26 1 12.2273 11.7891 -2.5167 27 1 13.1458 9.6216 -1.9344 28 6 5.4142 2.9304 -0.0006 29 6 4.0562 2.5297 0.0000 30 6 3.4232 1.2794 -0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2057 2.3126 -0.0104 35 1 1.2909 4.5102 0.0007 36 1 5.6933 6.8813 0.0001 37 1 8.4107 6.9936 0.8428 38 1 8.3229 7.1256 -0.9301 39 1 5.6416 9.0418 1.3965 40 1 7.0219 8.2425 2.2182 41 1 6.7192 11.1977 1.4392 42 1 7.2935 10.5060 2.9936 43 1 9.1115 11.3313 1.1689 44 1 9.3784 9.7890 2.0357 45 1 11.9483 11.1204 0.4860 46 1 6.2718 2.2738 -0.0011 47 1 4.0111 0.3735 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028111349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:00 Heat of formation + Delta-G solvation = 11.474803 kcal Electronic energy + Delta-G solvation = -28763.518778 eV Core-core repulsion = 24719.792540 eV Total energy + Delta-G solvation = -4043.726238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.78981 -39.80598 -39.04844 -37.65902 -35.85600 -34.46257 -32.57123 -32.42822 -30.06309 -29.66056 -29.35387 -28.41368 -27.17568 -25.27729 -24.44722 -23.19337 -22.25530 -21.25757 -20.43181 -20.10545 -19.64697 -18.63524 -17.89699 -17.36175 -16.67239 -16.07129 -16.01865 -15.86123 -15.38060 -14.93377 -14.80551 -14.38814 -14.22565 -14.02982 -13.87906 -13.71819 -13.43589 -13.21608 -13.09344 -12.96480 -12.35191 -12.22082 -12.14995 -11.96411 -11.83191 -11.40376 -11.04791 -10.98979 -10.84927 -10.84106 -10.34247 -10.21455 -10.11285 -10.07426 -9.95057 -9.87631 -9.75430 -8.87718 -8.64397 -8.24029 -7.82786 -6.90397 -5.82152 -3.19321 0.49456 1.35452 1.95633 2.67244 2.99385 3.23940 3.34519 3.37217 3.43752 3.45318 3.58942 4.35574 4.43677 4.56961 4.66631 4.75358 4.80645 4.88289 5.05020 5.11099 5.14864 5.24944 5.29343 5.31408 5.41516 5.54733 5.63267 5.71358 5.72403 5.91245 5.96581 6.03850 6.04810 6.14960 6.18653 6.37379 6.42958 6.45156 6.47260 6.59044 6.63140 6.71518 6.95267 7.11441 7.17307 7.45399 7.54685 7.58881 7.74175 8.18609 8.23342 9.11768 9.72204 10.38886 11.29826 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.001977 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.678816 B =14157.666238 C =14871.592419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.093 3.907 4 C -0.168 4.168 5 C -0.091 4.091 6 C 0.081 3.919 7 N -0.578 5.578 8 H 0.418 0.582 9 C 0.038 3.962 10 C 0.574 3.426 11 O -0.519 6.519 12 N -0.718 5.718 13 C 0.108 3.892 14 C 0.152 3.848 15 H 0.037 0.963 16 C -0.127 4.127 17 C -0.149 4.149 18 C 0.172 3.828 19 N -0.587 5.587 20 C -0.236 4.236 21 H 0.077 0.923 22 C 0.000 4.000 23 N -0.914 5.914 24 Si 0.911 3.089 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.288 1.288 28 C -0.121 4.121 29 C -0.078 4.078 30 C -0.102 4.102 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.390 0.610 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.254 0.746 46 H 0.158 0.842 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.554 -14.624 1.596 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.048 3.952 4 C -0.188 4.188 5 C -0.112 4.112 6 C -0.028 4.028 7 N -0.183 5.183 8 H 0.256 0.744 9 C -0.072 4.072 10 C 0.358 3.642 11 O -0.394 6.394 12 N -0.368 5.368 13 C -0.017 4.017 14 C 0.043 3.957 15 H 0.055 0.945 16 C -0.165 4.165 17 C -0.187 4.187 18 C 0.047 3.953 19 N -0.311 5.311 20 C -0.365 4.365 21 H 0.094 0.906 22 C -0.198 4.198 23 N -0.560 5.560 24 Si 0.741 3.259 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.215 1.215 28 C -0.148 4.148 29 C -0.083 4.083 30 C -0.122 4.122 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.223 0.777 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.175 0.825 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.371 -14.887 1.552 26.916 hybrid contribution -0.166 0.871 -0.701 1.130 sum -22.537 -14.016 0.851 26.553 Atomic orbital electron populations 1.23013 0.78721 1.03781 1.01142 1.86080 1.21018 1.26699 1.89578 1.18554 0.91852 0.84048 1.00736 1.20959 0.99798 0.91406 1.06668 1.19826 0.90324 0.97852 1.03179 1.18242 0.91510 0.86999 1.05999 1.41934 1.04191 1.07847 1.64329 0.74391 1.20411 0.83507 0.94111 1.09198 1.17241 0.87112 0.82084 0.77738 1.90876 1.26484 1.72494 1.49593 1.46078 1.10920 1.05513 1.74318 1.22365 0.85108 0.91223 1.02990 1.21133 0.90959 0.88487 0.95110 0.94548 1.22618 0.98297 0.98427 0.97175 1.23009 1.00424 0.95796 0.99492 1.21461 0.89739 0.97957 0.86122 1.44487 1.25672 1.45730 1.15259 1.19028 0.93456 1.35694 0.88284 0.90552 1.24932 0.96962 1.01000 0.96897 1.69942 1.20742 1.43980 1.21303 0.86065 0.81126 0.77296 0.81385 1.20339 1.21688 1.21524 1.20858 0.95833 0.92592 1.05478 1.17853 0.93061 0.91823 1.05519 1.19706 0.91107 0.96676 1.04698 0.92821 0.92810 0.88420 0.85010 0.85562 0.77680 0.91103 0.91066 0.92564 0.91746 0.92280 0.92278 0.90926 0.95490 0.93571 0.82481 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.94 10.49 -19.69 -0.21 -3.15 16 3 C 0.09 0.92 6.67 -39.30 -0.26 0.66 16 4 C -0.17 -1.38 9.01 -39.39 -0.35 -1.73 16 5 C -0.09 -0.77 10.06 -39.45 -0.40 -1.16 16 6 C 0.08 0.85 7.25 -83.91 -0.61 0.24 16 7 N -0.58 -5.71 6.08 -7.33 -0.04 -5.75 16 8 H 0.42 2.90 8.12 -40.82 -0.33 2.57 16 9 C 0.04 0.49 6.97 -82.31 -0.57 -0.08 16 10 C 0.57 8.95 7.80 -12.68 -0.10 8.85 16 11 O -0.52 -10.25 16.83 5.24 0.09 -10.16 16 12 N -0.72 -10.24 5.32 -61.50 -0.33 -10.56 16 13 C 0.11 2.00 5.07 -4.05 -0.02 1.98 16 14 C 0.15 2.86 3.22 -66.95 -0.22 2.64 16 15 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 16 C -0.13 -2.01 6.10 -24.90 -0.15 -2.16 16 17 C -0.15 -2.62 7.09 -24.58 -0.17 -2.79 16 18 C 0.17 4.00 5.41 -2.53 -0.01 3.98 16 19 N -0.59 -14.16 3.13 -162.57 -0.51 -14.67 16 20 C -0.24 -6.35 9.76 -15.06 -0.15 -6.49 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 22 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 23 N -0.91 -26.25 10.58 55.49 0.59 -25.66 16 24 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C -0.12 -1.54 10.53 -39.15 -0.41 -1.95 16 29 C -0.08 -0.91 6.16 -106.93 -0.66 -1.57 16 30 C -0.10 -1.11 10.04 -39.01 -0.39 -1.50 16 31 H 0.05 0.22 7.64 -51.93 -0.40 -0.18 16 32 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.13 0.73 6.26 -52.48 -0.33 0.40 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.39 4.21 7.39 -40.82 -0.30 3.91 16 37 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 38 H 0.07 1.50 7.92 -51.93 -0.41 1.09 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.02 7.81 -51.93 -0.41 0.61 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.89 6.94 -51.93 -0.36 1.52 16 44 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 47 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -33.16 386.59 -9.89 -43.05 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.70 Total: 4.29 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.58 Total: -0.06 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.29 Total: -56.65 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.12 Total: -13.31 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.16 -9.89 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.529 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds