Wall clock time and date at job start Wed Apr 1 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35984 * 117.00164 * 2 1 4 4 C 1.39380 * 119.82243 * 359.73246 * 3 2 1 5 5 C 1.37597 * 120.60444 * 179.69571 * 4 3 2 6 6 C 1.39210 * 120.02374 * 0.59405 * 5 4 3 7 7 N 1.37666 * 133.03296 * 179.71088 * 6 5 4 8 8 H 0.97006 * 125.61350 * 0.02562 * 7 6 5 9 9 C 1.38110 * 108.77293 * 179.97438 * 7 6 5 10 10 C 1.47056 * 125.43279 * 180.02562 * 9 7 6 11 11 O 1.21647 * 120.00138 * 179.97438 * 10 9 7 12 12 N 1.34780 * 119.99917 * 359.97438 * 10 9 7 13 13 C 1.46495 * 120.00021 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46856 * 185.12632 * 13 12 10 15 15 H 1.09001 * 109.87796 * 303.57204 * 14 13 12 16 16 C 1.54321 * 109.88316 * 64.59048 * 14 13 12 17 17 C 1.55159 * 102.94486 * 141.60848 * 16 14 13 18 18 C 1.54916 * 101.58064 * 324.49847 * 17 16 14 19 19 N 1.47031 * 109.88225 * 182.39809 * 14 13 12 20 20 C 1.36936 * 125.64591 * 61.62454 * 19 14 13 21 21 H 1.08002 * 120.00198 * 14.75836 * 20 19 14 22 22 C 1.38818 * 119.99481 * 194.75870 * 20 19 14 23 23 N 1.31611 * 120.00066 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99424 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47880 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47129 * 120.00132 * 24 22 20 27 27 H 1.48499 * 109.47203 * 239.99896 * 24 22 20 28 28 C 1.35881 * 109.14229 * 0.02562 * 9 7 6 29 29 C 1.40814 * 119.61453 * 359.68567 * 6 5 4 30 30 C 1.37842 * 119.82084 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47325 * 59.99707 * 1 2 3 32 32 H 1.09005 * 109.46875 * 299.99679 * 1 2 3 33 33 H 1.08997 * 109.47071 * 179.97438 * 1 2 3 34 34 H 1.08006 * 119.69285 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.98842 * 180.27927 * 5 4 3 36 36 H 0.97005 * 119.99520 * 359.97438 * 12 10 9 37 37 H 1.08998 * 109.47509 * 305.13047 * 13 12 10 38 38 H 1.09003 * 109.46975 * 65.13122 * 13 12 10 39 39 H 1.09000 * 110.72509 * 259.97221 * 16 14 13 40 40 H 1.09004 * 110.72195 * 23.24883 * 16 14 13 41 41 H 1.08998 * 111.00720 * 82.57255 * 17 16 14 42 42 H 1.09002 * 111.00724 * 206.42721 * 17 16 14 43 43 H 1.08996 * 110.36648 * 155.84662 * 18 17 16 44 44 H 1.08997 * 110.36805 * 278.06107 * 18 17 16 45 45 H 0.97003 * 119.99813 * 180.02562 * 23 22 20 46 46 H 1.08006 * 126.12471 * 179.97438 * 28 9 7 47 47 H 1.07995 * 120.16747 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2837 2.3782 -0.0056 5 6 1.8916 3.6126 0.0006 6 6 3.2806 3.7050 0.0001 7 7 4.1512 4.7714 0.0001 8 1 3.8976 5.7077 0.0009 9 6 5.4453 4.2888 0.0001 10 6 6.6628 5.1135 0.0006 11 8 7.7572 4.5825 0.0010 12 7 6.5661 6.4579 0.0007 13 6 7.7789 7.2795 0.0019 14 6 7.3952 8.7549 0.1306 15 1 6.7122 9.0317 -0.6725 16 6 6.7262 9.0058 1.4984 17 6 7.2852 10.3936 1.9095 18 6 8.7271 10.3271 1.3471 19 7 8.6025 9.5923 0.0751 20 6 9.4681 9.6754 -0.9827 21 1 9.1772 9.2927 -1.9499 22 6 10.7194 10.2516 -0.8119 23 7 11.0741 10.7174 0.3668 24 14 11.9004 10.3644 -2.2548 25 1 11.2670 9.7726 -3.4605 26 1 12.2273 11.7891 -2.5167 27 1 13.1458 9.6216 -1.9344 28 6 5.4142 2.9304 -0.0006 29 6 4.0562 2.5297 0.0000 30 6 3.4232 1.2794 -0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2057 2.3126 -0.0104 35 1 1.2909 4.5102 0.0007 36 1 5.6933 6.8813 0.0001 37 1 8.4107 6.9936 0.8428 38 1 8.3229 7.1256 -0.9301 39 1 5.6416 9.0418 1.3965 40 1 7.0219 8.2425 2.2182 41 1 6.7192 11.1977 1.4392 42 1 7.2935 10.5060 2.9936 43 1 9.1115 11.3313 1.1689 44 1 9.3784 9.7890 2.0357 45 1 11.9483 11.1204 0.4860 46 1 6.2718 2.2738 -0.0011 47 1 4.0111 0.3735 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028111349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:59 Heat of formation + Delta-G solvation = -10.902989 kcal Electronic energy + Delta-G solvation = -28764.489152 eV Core-core repulsion = 24719.792540 eV Total energy + Delta-G solvation = -4044.696612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.64458 -40.80905 -40.02869 -39.22316 -36.60236 -35.92035 -34.43714 -33.24265 -31.56751 -30.87926 -30.37804 -29.59343 -27.67419 -26.84362 -26.07658 -24.36480 -23.09244 -22.15940 -21.95727 -21.40842 -21.04048 -19.69059 -18.72666 -18.59315 -18.06623 -17.36062 -16.78542 -16.67841 -16.63719 -16.47644 -16.04852 -15.76574 -15.37738 -15.32045 -14.83151 -14.75564 -14.56009 -14.20661 -14.11436 -13.98148 -13.69344 -13.66661 -13.43950 -13.03514 -12.89291 -12.87751 -12.74312 -12.70513 -11.99858 -11.91989 -11.77035 -11.67767 -11.51909 -11.48271 -11.43274 -11.37912 -10.91738 -10.70697 -10.26442 -9.07443 -8.88070 -8.57931 -7.90607 -5.28173 -0.35547 0.61449 1.00632 1.42832 1.45370 1.54236 1.78298 1.99925 2.21813 2.46448 2.50319 2.82742 3.29460 3.58054 3.70043 3.77164 3.92587 3.95364 4.00268 4.05083 4.23692 4.30793 4.39625 4.41300 4.46307 4.50676 4.51288 4.53402 4.70440 4.80210 4.84851 4.92076 4.97160 5.03314 5.10585 5.13545 5.15783 5.26379 5.34740 5.40644 5.45640 5.52933 5.58998 5.65078 5.77292 5.82797 6.20989 6.33969 6.50516 6.55831 7.01287 7.07492 7.74252 8.39705 9.20464 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.001977 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.678816 B =14157.666238 C =14871.592419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.091 3.909 4 C -0.161 4.161 5 C -0.085 4.085 6 C 0.079 3.921 7 N -0.560 5.560 8 H 0.434 0.566 9 C 0.027 3.973 10 C 0.577 3.423 11 O -0.569 6.569 12 N -0.699 5.699 13 C 0.127 3.873 14 C 0.148 3.852 15 H 0.056 0.944 16 C -0.114 4.114 17 C -0.133 4.133 18 C 0.173 3.827 19 N -0.609 5.609 20 C -0.239 4.239 21 H 0.078 0.922 22 C -0.060 4.060 23 N -0.945 5.945 24 Si 0.971 3.029 25 H -0.266 1.266 26 H -0.289 1.289 27 H -0.296 1.296 28 C -0.131 4.131 29 C -0.100 4.100 30 C -0.126 4.126 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.412 0.588 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.036 0.964 44 H -0.009 1.009 45 H 0.248 0.752 46 H 0.149 0.851 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.365 -14.769 1.370 32.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.046 3.954 4 C -0.180 4.180 5 C -0.105 4.105 6 C -0.031 4.031 7 N -0.167 5.167 8 H 0.275 0.725 9 C -0.084 4.084 10 C 0.364 3.636 11 O -0.448 6.448 12 N -0.350 5.350 13 C 0.001 3.999 14 C 0.041 3.959 15 H 0.073 0.927 16 C -0.152 4.152 17 C -0.172 4.172 18 C 0.048 3.952 19 N -0.334 5.334 20 C -0.368 4.368 21 H 0.096 0.904 22 C -0.254 4.254 23 N -0.593 5.593 24 Si 0.799 3.201 25 H -0.191 1.191 26 H -0.216 1.216 27 H -0.223 1.223 28 C -0.158 4.158 29 C -0.104 4.104 30 C -0.146 4.146 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.182 0.818 35 H 0.179 0.821 36 H 0.249 0.751 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.009 0.991 45 H 0.057 0.943 46 H 0.166 0.834 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.279 -15.015 1.317 31.166 hybrid contribution 1.144 0.757 -0.636 1.512 sum -26.135 -14.258 0.680 29.779 Atomic orbital electron populations 1.23334 0.76504 1.05416 1.02392 1.86065 1.23377 1.26634 1.89376 1.18733 0.91686 0.85100 0.99919 1.21359 1.01360 0.90546 1.04758 1.20232 0.89390 0.99313 1.01568 1.18503 0.92405 0.86372 1.05782 1.41740 1.02765 1.08655 1.63490 0.72526 1.19792 0.83629 0.93533 1.11481 1.17541 0.87378 0.82229 0.76419 1.90851 1.28701 1.73415 1.51877 1.45683 1.10624 1.04904 1.73809 1.21816 0.86064 0.91895 1.00095 1.21357 0.89309 0.87321 0.97939 0.92669 1.22624 1.00912 0.96959 0.94682 1.22871 0.96116 0.97457 1.00725 1.21272 0.93066 0.95255 0.85644 1.44742 1.26587 1.47314 1.14734 1.19341 0.93972 1.34162 0.89333 0.90390 1.25687 0.98740 1.01788 0.99183 1.70140 1.20661 1.45445 1.23028 0.85127 0.78792 0.77002 0.79142 1.19083 1.21556 1.22342 1.20958 0.96573 0.92855 1.05437 1.17930 0.92657 0.92984 1.06850 1.19802 0.92111 0.96457 1.06204 0.91493 0.91458 0.86871 0.81784 0.82055 0.75079 0.94047 0.94231 0.87417 0.91762 0.90944 0.90002 0.94601 0.99084 0.94314 0.83361 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -5.60 10.49 -93.37 -0.98 -6.58 16 3 C 0.09 1.61 6.67 22.45 0.15 1.76 16 4 C -0.16 -1.99 9.01 22.39 0.20 -1.79 16 5 C -0.08 -1.06 10.06 22.35 0.22 -0.84 16 6 C 0.08 1.45 7.25 39.09 0.28 1.73 16 7 N -0.56 -9.61 6.08 -177.11 -1.08 -10.69 16 8 H 0.43 4.32 8.12 -92.70 -0.75 3.57 16 9 C 0.03 0.67 6.97 39.92 0.28 0.95 16 10 C 0.58 18.10 7.80 86.56 0.68 18.78 16 11 O -0.57 -23.53 16.83 -4.18 -0.07 -23.60 16 12 N -0.70 -19.11 5.32 -466.73 -2.48 -21.60 16 13 C 0.13 4.76 5.07 86.38 0.44 5.20 16 14 C 0.15 5.37 3.22 45.34 0.15 5.52 16 15 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 16 C -0.11 -3.22 6.10 31.78 0.19 -3.02 16 17 C -0.13 -4.39 7.09 31.99 0.23 -4.17 16 18 C 0.17 8.22 5.41 86.86 0.47 8.69 16 19 N -0.61 -29.81 3.13 -668.24 -2.09 -31.90 16 20 C -0.24 -13.12 9.76 84.04 0.82 -12.30 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.06 -3.42 5.47 84.86 0.46 -2.96 16 23 N -0.94 -56.78 10.58 21.65 0.23 -56.55 16 24 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 28 C -0.13 -3.41 10.53 22.55 0.24 -3.17 16 29 C -0.10 -2.28 6.16 -21.36 -0.13 -2.41 16 30 C -0.13 -2.68 10.04 22.64 0.23 -2.45 16 31 H 0.07 0.29 7.64 -2.39 -0.02 0.28 16 32 H 0.07 0.29 7.66 -2.38 -0.02 0.27 16 33 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 34 H 0.16 0.94 6.26 -2.91 -0.02 0.92 16 35 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 36 H 0.41 7.58 7.39 -92.70 -0.69 6.90 16 37 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 38 H 0.04 1.72 7.92 -2.39 -0.02 1.70 16 39 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 1.85 7.81 -2.38 -0.02 1.83 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.04 1.94 6.94 -2.39 -0.02 1.92 16 44 H -0.01 -0.48 8.06 -2.39 -0.02 -0.50 16 45 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 46 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 47 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -78.13 386.59 1.15 -76.98 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.43 Total: 14.88 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.02 Total: 10.75 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -5.42 Total: -120.74 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.05 Total: -30.18 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -78.13 1.15 -76.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.078 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds