Wall clock time and date at job start Wed Apr 1 2020 03:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38074 * 125.89910 * 341.28603 * 3 2 1 5 5 C 1.39350 * 107.51987 * 179.97438 * 4 3 2 6 6 C 1.38008 * 107.48553 * 359.97438 * 5 4 3 7 7 C 1.47054 * 125.91982 * 179.97438 * 6 5 4 8 8 O 1.21648 * 120.00159 * 18.51235 * 7 6 5 9 9 N 1.34777 * 119.99661 * 198.50806 * 7 6 5 10 10 C 1.47080 * 120.87943 * 186.66069 * 9 7 6 11 11 C 1.53236 * 108.51989 * 231.16165 * 10 9 7 12 12 N 1.46892 * 109.34209 * 306.16863 * 11 10 9 13 13 C 1.46903 * 111.00384 * 187.25491 * 12 11 10 14 14 H 1.09004 * 110.63747 * 296.69035 * 13 12 11 15 15 C 1.55152 * 110.72191 * 59.83438 * 13 12 11 16 16 C 1.54906 * 101.58083 * 153.86781 * 15 13 12 17 17 N 1.47420 * 104.83388 * 322.99131 * 16 15 13 18 18 C 1.36936 * 125.64991 * 204.09440 * 17 16 15 19 19 H 1.07997 * 120.00228 * 166.89601 * 18 17 16 20 20 C 1.38813 * 120.00030 * 346.89868 * 18 17 16 21 21 N 1.31628 * 119.99712 * 323.52104 * 20 18 17 22 22 Si 1.86799 * 120.00356 * 143.52422 * 20 18 17 23 23 H 1.48496 * 109.46903 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47317 * 240.00154 * 22 20 18 25 25 H 1.48497 * 109.46890 * 119.99922 * 22 20 18 26 26 C 1.47019 * 108.70249 * 24.35424 * 17 16 15 27 27 C 1.46901 * 111.27137 * 63.10350 * 12 11 10 28 28 C 1.47074 * 120.88272 * 6.63394 * 9 7 6 29 29 N 1.36723 * 125.89337 * 161.56593 * 3 2 1 30 30 H 0.97004 * 125.68641 * 359.97438 * 29 3 2 31 31 H 1.08005 * 126.23848 * 0.02562 * 4 3 2 32 32 H 1.08000 * 126.25997 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.63289 * 111.45042 * 10 9 7 34 34 H 1.09005 * 109.62954 * 350.86785 * 10 9 7 35 35 H 1.08997 * 109.49447 * 186.20623 * 11 10 9 36 36 H 1.09004 * 109.51517 * 66.14390 * 11 10 9 37 37 H 1.09001 * 111.00236 * 35.79391 * 15 13 12 38 38 H 1.09001 * 111.00464 * 271.94565 * 15 13 12 39 39 H 1.09008 * 110.36583 * 204.15471 * 16 15 13 40 40 H 1.08997 * 110.36704 * 81.83421 * 16 15 13 41 41 H 0.96996 * 119.99568 * 355.25754 * 21 20 18 42 42 H 1.09005 * 109.87883 * 118.13162 * 26 17 16 43 43 H 1.08997 * 109.88596 * 239.29149 * 26 17 16 44 44 H 1.09007 * 109.49245 * 56.85443 * 27 12 11 45 45 H 1.08997 * 109.49589 * 176.93606 * 27 12 11 46 46 H 1.08997 * 109.63195 * 248.54533 * 28 9 7 47 47 H 1.08997 * 109.63489 * 9.12852 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3781 -1.0583 0.3589 5 6 4.7003 -0.6418 0.2173 6 6 4.6782 0.6649 -0.2263 7 6 5.8551 1.4999 -0.5093 8 8 6.9410 0.9807 -0.6859 9 7 5.7306 2.8403 -0.5732 10 6 6.8586 3.6839 -0.9968 11 6 7.0578 4.7895 0.0454 12 7 5.7896 5.5031 0.2461 13 6 5.9773 6.6782 1.1074 14 1 6.3012 6.3766 2.1036 15 6 6.9935 7.6656 0.4753 16 6 6.5461 9.0123 1.0964 17 7 5.0753 8.9308 1.1550 18 6 4.2173 9.9977 1.1822 19 1 3.1615 9.8461 1.0126 20 6 4.7045 11.2741 1.4277 21 7 5.6909 11.4490 2.2815 22 14 3.9604 12.7435 0.5465 23 1 2.8733 12.2823 -0.3538 24 1 5.0100 13.4250 -0.2528 25 1 3.4058 13.6913 1.5462 26 6 4.6825 7.5144 1.1856 27 6 4.7566 4.6114 0.7899 28 6 4.4631 3.4984 -0.2218 29 7 3.3691 1.0518 -0.3502 30 1 3.0622 1.9246 -0.6416 31 1 3.0472 -2.0323 0.6883 32 1 5.5813 -1.2335 0.4173 33 1 6.6383 4.1302 -1.9665 34 1 7.7626 3.0788 -1.0659 35 1 7.8167 5.4884 -0.3062 36 1 7.3796 4.3474 0.9884 37 1 6.8963 7.6845 -0.6102 38 1 8.0134 7.4188 0.7704 39 1 6.8550 9.8436 0.4625 40 1 6.9601 9.1241 2.0984 41 1 6.0312 10.6965 2.7901 42 1 4.1535 7.2965 2.1135 43 1 4.0449 7.2879 0.3311 44 1 5.1101 4.1713 1.7224 45 1 3.8466 5.1811 0.9781 46 1 4.0125 3.9269 -1.1169 47 1 3.7833 2.7708 0.2214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046022921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:27 Heat of formation + Delta-G solvation = 108.057878 kcal Electronic energy + Delta-G solvation = -29666.739166 eV Core-core repulsion = 25659.493835 eV Total energy + Delta-G solvation = -4007.245331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.22101 -40.15017 -38.74722 -37.00982 -36.94906 -34.67938 -32.49713 -32.12377 -31.43209 -30.39419 -29.21915 -28.33861 -26.33532 -24.50521 -24.30402 -23.51988 -22.06182 -21.15440 -21.01959 -20.17708 -19.80880 -18.92767 -17.80319 -17.51904 -16.50503 -16.19179 -15.76615 -15.45074 -15.16866 -15.08116 -14.81936 -14.47646 -14.33683 -14.09609 -13.85326 -13.61566 -13.57018 -13.43677 -13.30683 -13.15772 -13.09090 -12.77475 -12.57282 -12.29919 -11.94308 -11.76913 -11.61048 -11.42839 -10.75861 -10.66543 -10.51657 -10.45767 -10.39748 -10.23670 -10.05840 -9.71064 -9.69656 -9.24187 -8.84728 -8.39288 -8.32707 -6.99607 -6.22428 -3.11214 0.44603 1.62018 1.71301 2.37728 2.53487 2.83273 2.90789 3.40919 3.50954 3.53105 3.67149 3.69684 3.88554 4.33604 4.51698 4.56975 4.62100 4.65837 4.74807 4.84957 4.96713 5.06690 5.12918 5.27341 5.30607 5.32449 5.34861 5.47310 5.50792 5.54245 5.59177 5.64746 5.75385 5.88825 5.98170 6.03713 6.15879 6.22874 6.25660 6.42724 6.46168 6.48354 6.85296 6.86433 6.88353 6.97407 6.99829 7.17125 7.61797 7.77836 8.45428 8.96235 9.78236 10.34830 11.13265 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.002373 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.438003 B =11795.613167 C =13208.006314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.272 3.728 3 C 0.086 3.914 4 C -0.122 4.122 5 C -0.114 4.114 6 C 0.000 4.000 7 C 0.588 3.412 8 O -0.520 6.520 9 N -0.609 5.609 10 C 0.119 3.881 11 C 0.040 3.960 12 N -0.525 5.525 13 C 0.072 3.928 14 H 0.045 0.955 15 C -0.125 4.125 16 C 0.145 3.855 17 N -0.599 5.599 18 C -0.346 4.346 19 H 0.066 0.934 20 C -0.020 4.020 21 N -0.903 5.903 22 Si 1.059 2.941 23 H -0.292 1.292 24 H -0.289 1.289 25 H -0.295 1.295 26 C 0.147 3.853 27 C 0.041 3.959 28 C 0.090 3.910 29 N -0.519 5.519 30 H 0.429 0.571 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.268 0.732 42 H 0.016 0.984 43 H 0.036 0.964 44 H 0.040 0.960 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -23.878 -5.417 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.044 4.044 3 C -0.032 4.032 4 C -0.150 4.150 5 C -0.140 4.140 6 C -0.118 4.118 7 C 0.376 3.624 8 O -0.396 6.396 9 N -0.343 5.343 10 C -0.003 4.003 11 C -0.089 4.089 12 N -0.250 5.250 13 C -0.036 4.036 14 H 0.063 0.937 15 C -0.164 4.164 16 C 0.019 3.981 17 N -0.327 5.327 18 C -0.473 4.473 19 H 0.084 0.916 20 C -0.223 4.223 21 N -0.543 5.543 22 Si 0.889 3.111 23 H -0.218 1.218 24 H -0.216 1.216 25 H -0.223 1.223 26 C 0.021 3.979 27 C -0.088 4.088 28 C -0.034 4.034 29 N -0.124 5.124 30 H 0.275 0.725 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.867 -22.063 -6.257 22.949 hybrid contribution 0.213 -1.406 1.048 1.766 sum -0.655 -23.469 -5.208 24.049 Atomic orbital electron populations 1.81366 1.11150 1.05484 1.08816 1.24311 0.90802 0.95198 0.94077 1.15680 0.83312 0.90954 1.13217 1.21299 0.91502 0.98214 1.04025 1.21287 0.97804 0.92578 1.02292 1.20616 0.82327 0.96774 1.12058 1.17131 0.86922 0.81145 0.77227 1.90856 1.26110 1.72526 1.50073 1.48124 1.14206 1.05324 1.66662 1.21833 0.89493 0.91051 0.97880 1.22490 0.92617 0.95637 0.98153 1.61996 1.07053 1.07087 1.48842 1.22688 0.98305 0.89252 0.93351 0.93669 1.22876 0.96441 0.96091 1.00963 1.21470 0.85183 0.94063 0.97362 1.44525 1.01219 0.99990 1.86915 1.19650 0.91299 0.86460 1.49929 0.91639 1.25653 0.99871 0.98696 0.98092 1.70752 1.30397 1.33647 1.19482 0.83653 0.75445 0.75654 0.76377 1.21770 1.21605 1.22293 1.21248 0.93159 0.85608 0.97899 1.22425 0.97688 0.93564 0.95136 1.22402 0.85698 0.95246 1.00052 1.42961 1.05333 1.13196 1.50896 0.72504 0.82318 0.82084 0.90101 0.88258 0.88759 0.94375 0.90551 0.92183 0.92907 0.96051 0.92124 0.96580 0.94566 0.94148 0.88621 0.89479 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.05 18.54 41.84 0.78 -3.27 16 2 C 0.27 2.16 15.89 -22.47 -0.36 1.80 16 3 C 0.09 0.55 6.93 -83.82 -0.58 -0.03 16 4 C -0.12 -0.69 10.80 -39.23 -0.42 -1.11 16 5 C -0.11 -0.78 10.65 -39.25 -0.42 -1.20 16 6 C 0.00 0.00 6.51 -82.04 -0.53 -0.54 16 7 C 0.59 5.93 7.65 -12.69 -0.10 5.83 16 8 O -0.52 -6.79 16.39 5.24 0.09 -6.70 16 9 N -0.61 -5.57 3.01 -173.87 -0.52 -6.09 16 10 C 0.12 1.12 6.61 -3.60 -0.02 1.10 16 11 C 0.04 0.42 5.46 -3.71 -0.02 0.40 16 12 N -0.52 -6.52 4.45 -224.15 -1.00 -7.52 16 13 C 0.07 1.14 2.64 -65.87 -0.17 0.97 16 14 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 15 C -0.12 -2.10 5.34 -24.59 -0.13 -2.23 16 16 C 0.15 3.26 5.42 -2.53 -0.01 3.24 16 17 N -0.60 -14.83 3.31 -170.07 -0.56 -15.39 16 18 C -0.35 -9.67 9.93 -15.06 -0.15 -9.81 16 19 H 0.07 1.84 8.04 -52.49 -0.42 1.42 16 20 C -0.02 -0.57 4.91 -17.43 -0.09 -0.66 16 21 N -0.90 -26.92 12.97 55.49 0.72 -26.20 16 22 Si 1.06 25.14 30.04 -169.99 -5.11 20.03 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.15 2.91 5.73 -3.06 -0.02 2.90 16 27 C 0.04 0.42 5.46 -3.70 -0.02 0.40 16 28 C 0.09 0.69 5.43 -3.60 -0.02 0.67 16 29 N -0.52 -3.21 4.88 -6.96 -0.03 -3.25 16 30 H 0.43 2.02 5.88 -40.82 -0.24 1.78 16 31 H 0.16 0.53 8.06 -52.48 -0.42 0.11 16 32 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.96 7.04 -51.93 -0.37 0.59 16 35 H 0.09 0.98 6.77 -51.93 -0.35 0.62 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 39 H 0.05 1.30 7.94 -51.92 -0.41 0.89 16 40 H 0.02 0.52 7.09 -51.93 -0.37 0.15 16 41 H 0.27 8.04 6.69 -40.82 -0.27 7.76 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.04 0.72 7.74 -51.93 -0.40 0.32 16 44 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 1.03 6.84 -51.93 -0.35 0.67 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.09 0.51 4.06 -51.93 -0.21 0.30 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -33.53 379.40 -9.41 -42.94 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.41 Total: -1.99 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.07 Total: 1.74 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.62 Total: -61.73 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.09 Total: -6.70 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.11 Total: 20.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.53 -9.41 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046022921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.998 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds