Wall clock time and date at job start Wed Apr 1 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00018 * 2 1 4 4 H 1.48499 * 109.47212 * 270.00042 * 3 2 1 5 5 H 1.48494 * 109.47238 * 30.00569 * 3 2 1 6 6 H 1.48503 * 109.47171 * 150.00555 * 3 2 1 7 7 C 1.38811 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00419 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00197 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.66655 * 325.49487 * 10 9 7 12 12 C 1.53477 * 109.67250 * 205.00087 * 10 9 7 13 13 C 1.52450 * 109.15138 * 126.01339 * 12 10 9 14 14 C 1.53116 * 109.68129 * 43.93153 * 13 12 10 15 15 C 1.53427 * 109.32942 * 77.06149 * 14 13 12 16 16 C 1.53417 * 108.49851 * 287.68010 * 15 14 13 17 17 N 1.46070 * 110.10659 * 316.34122 * 16 15 14 18 18 C 1.34782 * 120.16904 * 293.08391 * 17 16 15 19 19 O 1.21579 * 120.00012 * 158.60660 * 18 17 16 20 20 C 1.47603 * 119.99802 * 338.60589 * 18 17 16 21 21 C 1.41818 * 119.98344 * 24.43540 * 20 18 17 22 22 C 1.35638 * 119.60253 * 179.97438 * 21 20 18 23 23 C 1.41051 * 119.39942 * 0.02562 * 22 21 20 24 24 N 1.32183 * 133.25788 * 180.02562 * 23 22 21 25 25 N 1.28642 * 109.56876 * 179.97438 * 24 23 22 26 26 C 1.30724 * 110.34551 * 0.02562 * 25 24 23 27 27 N 1.36251 * 107.44776 * 359.97438 * 26 25 24 28 28 C 1.35847 * 133.52654 * 180.33284 * 27 26 25 29 29 C 1.47124 * 119.65902 * 113.05985 * 17 16 15 30 30 H 0.96999 * 119.99790 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99454 * 359.97438 * 9 7 2 32 32 H 1.09010 * 109.52252 * 245.91125 * 12 10 9 33 33 H 1.09000 * 109.52801 * 6.10092 * 12 10 9 34 34 H 1.09005 * 109.43750 * 163.99957 * 13 12 10 35 35 H 1.09004 * 109.43214 * 283.86810 * 13 12 10 36 36 H 1.09003 * 109.49277 * 317.10677 * 14 13 12 37 37 H 1.09003 * 109.49544 * 197.01704 * 14 13 12 38 38 H 1.08994 * 109.63488 * 167.97382 * 15 14 13 39 39 H 1.09001 * 109.63158 * 47.38049 * 15 14 13 40 40 H 1.08996 * 109.36453 * 196.14702 * 16 15 14 41 41 H 1.09003 * 109.36852 * 76.53342 * 16 15 14 42 42 H 1.08002 * 120.19742 * 359.97438 * 21 20 18 43 43 H 1.07993 * 120.29857 * 179.97438 * 22 21 20 44 44 H 1.07993 * 126.27606 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.81492 * 359.93127 * 28 27 26 46 46 H 1.09000 * 109.84781 * 168.34141 * 29 17 16 47 47 H 1.09000 * 109.85119 * 47.35112 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0022 11 1 3.5632 -3.2120 0.5790 12 6 5.5050 -2.2640 0.6082 13 6 5.7078 -3.2630 1.7417 14 6 5.2090 -4.6440 1.3074 15 6 6.2435 -5.2874 0.3748 16 6 6.1982 -4.5624 -0.9765 17 7 4.8123 -4.3403 -1.3809 18 6 4.0218 -5.3865 -1.6929 19 8 2.8125 -5.2691 -1.6489 20 6 4.6244 -6.6747 -2.0880 21 6 5.9380 -7.0020 -1.6654 22 6 6.4839 -8.1881 -2.0326 23 6 5.7348 -9.0777 -2.8306 24 7 5.9864 -10.2733 -3.3350 25 7 4.9671 -10.6814 -4.0054 26 6 4.0144 -9.7869 -3.9735 27 7 4.4636 -8.7380 -3.2287 28 6 3.9153 -7.5521 -2.8566 29 6 4.2835 -2.9689 -1.4454 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 6.2652 -2.4220 -0.1570 33 1 5.5848 -1.2493 0.9981 34 1 6.7679 -3.3213 1.9885 35 1 5.1494 -2.9349 2.6185 36 1 4.2603 -4.5391 0.7811 37 1 5.0703 -5.2736 2.1864 38 1 6.0037 -6.3412 0.2333 39 1 7.2386 -5.1904 0.8092 40 1 6.7015 -5.1691 -1.7292 41 1 6.7073 -3.6025 -0.8890 42 1 6.5002 -6.3109 -1.0549 43 1 7.4835 -8.4486 -1.7174 44 1 3.0481 -9.8652 -4.4493 45 1 2.9139 -7.3007 -3.1730 46 1 3.3196 -2.9675 -1.9543 47 1 4.9849 -2.3264 -1.9777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088398708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:21 Heat of formation + Delta-G solvation = 165.175268 kcal Electronic energy + Delta-G solvation = -30973.756060 eV Core-core repulsion = 26968.987525 eV Total energy + Delta-G solvation = -4004.768535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.88836 -41.18527 -38.47643 -37.73943 -35.68581 -34.26933 -33.99200 -32.45351 -31.53597 -30.43978 -29.62875 -27.72660 -27.14092 -25.34086 -23.98958 -23.57395 -22.83065 -22.36246 -21.49604 -20.31732 -19.68063 -18.33932 -17.90676 -17.50584 -17.04436 -16.88263 -16.26385 -15.76542 -15.73366 -15.37194 -15.11883 -14.85567 -14.25543 -14.21809 -13.77847 -13.65382 -13.12520 -12.97160 -12.71366 -12.63860 -12.55954 -12.38636 -12.12909 -11.93198 -11.73316 -11.40561 -11.27084 -11.15288 -11.00387 -10.90214 -10.86687 -10.64021 -10.33654 -10.17055 -10.01876 -9.78816 -9.73228 -9.60861 -9.22012 -8.63584 -8.41683 -7.30451 -5.79813 -3.17084 0.09644 0.55122 1.83450 2.17942 2.63446 2.89523 3.12677 3.32395 3.34393 3.41503 3.72022 3.99607 4.16772 4.24483 4.36442 4.49535 4.51899 4.54385 4.68266 4.76209 4.94130 5.02219 5.14943 5.18705 5.25015 5.33011 5.38716 5.45389 5.47966 5.54787 5.58441 5.61167 5.65699 5.73613 5.86561 5.89150 5.91085 6.01419 6.09404 6.24022 6.31935 6.40038 6.42253 6.55480 6.59137 6.89387 7.34227 7.97935 8.01855 8.16478 8.39056 9.16638 9.87949 10.05563 11.38227 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002977 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.120969 B = 9403.305403 C =10457.994217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.093 0.907 9 N -0.742 5.742 10 C 0.163 3.837 11 H 0.075 0.925 12 C -0.140 4.140 13 C -0.112 4.112 14 C -0.134 4.134 15 C -0.167 4.167 16 C 0.075 3.925 17 N -0.599 5.599 18 C 0.567 3.433 19 O -0.511 6.511 20 C -0.143 4.143 21 C -0.125 4.125 22 C -0.089 4.089 23 C 0.200 3.800 24 N -0.294 5.294 25 N -0.253 5.253 26 C 0.124 3.876 27 N -0.396 5.396 28 C 0.132 3.868 29 C 0.094 3.906 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.211 0.789 43 H 0.161 0.839 44 H 0.230 0.770 45 H 0.185 0.815 46 H 0.096 0.904 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.784 -13.452 -3.027 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.178 4.178 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.205 4.205 16 C -0.048 4.048 17 N -0.332 5.332 18 C 0.353 3.647 19 O -0.386 6.386 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.111 4.111 23 C -0.049 4.049 24 N -0.139 5.139 25 N -0.090 5.090 26 C -0.159 4.159 27 N -0.076 5.076 28 C 0.006 3.994 29 C -0.030 4.030 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.227 0.773 43 H 0.179 0.821 44 H 0.246 0.754 45 H 0.202 0.798 46 H 0.115 0.885 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.556 -14.886 -3.444 22.529 hybrid contribution -0.252 2.364 0.169 2.384 sum 16.304 -12.522 -3.274 20.817 Atomic orbital electron populations 1.69709 1.05128 1.25792 1.57159 1.24689 0.95199 0.97135 1.01930 0.86580 0.79192 0.85164 0.77711 1.21125 1.21775 1.20358 1.19122 0.80450 0.94847 1.43165 0.88951 1.42883 1.04185 1.01669 1.89684 1.21094 0.91129 0.89606 0.92879 0.90712 1.22313 0.97855 0.99611 0.98024 1.21464 1.00298 0.94674 0.98576 1.22004 1.00119 0.96085 0.98941 1.22813 1.01411 1.00293 0.95973 1.22422 0.83641 1.03025 0.95717 1.47743 1.11656 1.07014 1.66799 1.17659 0.86407 0.82804 0.77814 1.90905 1.13675 1.82812 1.51192 1.19686 0.95869 0.96734 1.02697 1.23624 0.94631 0.97831 0.98711 1.20286 1.00797 0.91983 0.97993 1.22678 0.84908 0.95773 1.01531 1.74925 1.19001 1.06926 1.13077 1.74171 0.97218 1.23242 1.14415 1.26661 1.03428 0.84310 1.01467 1.43858 1.14344 1.14509 1.34854 1.21737 0.99412 0.82387 0.95830 1.23058 1.00194 0.78365 1.01346 0.93038 0.80590 0.91766 0.91607 0.92442 0.91846 0.89167 0.92284 0.89913 0.89840 0.89789 0.87890 0.77331 0.82136 0.75394 0.79840 0.88537 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.87 13.97 55.49 0.78 -28.10 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 21.32 27.73 -169.99 -4.71 16.61 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 7 C -0.25 -6.70 10.43 -15.06 -0.16 -6.86 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.74 -16.25 4.89 -52.87 -0.26 -16.51 16 10 C 0.16 2.78 2.40 -67.36 -0.16 2.61 16 11 H 0.08 1.44 5.39 -51.93 -0.28 1.16 16 12 C -0.14 -1.79 5.24 -26.76 -0.14 -1.93 16 13 C -0.11 -1.24 5.67 -26.95 -0.15 -1.39 16 14 C -0.13 -1.44 5.44 -26.45 -0.14 -1.58 16 15 C -0.17 -1.21 4.67 -26.29 -0.12 -1.33 16 16 C 0.07 0.58 4.71 -4.06 -0.02 0.56 16 17 N -0.60 -7.11 1.72 -176.24 -0.30 -7.42 16 18 C 0.57 7.54 6.45 -12.44 -0.08 7.46 16 19 O -0.51 -9.08 16.23 5.30 0.09 -9.00 16 20 C -0.14 -1.46 5.78 -105.34 -0.61 -2.07 16 21 C -0.13 -0.98 6.30 -39.14 -0.25 -1.22 16 22 C -0.09 -0.73 10.09 -39.45 -0.40 -1.13 16 23 C 0.20 2.27 7.92 -155.95 -1.23 1.03 16 24 N -0.29 -3.99 12.29 31.19 0.38 -3.60 16 25 N -0.25 -3.26 12.18 29.87 0.36 -2.90 16 26 C 0.12 1.19 12.97 -89.08 -1.16 0.04 16 27 N -0.40 -4.07 2.94 -63.63 -0.19 -4.26 16 28 C 0.13 1.29 10.52 -16.40 -0.17 1.12 16 29 C 0.09 1.43 5.45 -3.38 -0.02 1.41 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.36 7.71 5.39 -40.82 -0.22 7.49 16 32 H 0.06 0.65 4.49 -51.92 -0.23 0.42 16 33 H 0.07 0.92 7.61 -51.93 -0.40 0.53 16 34 H 0.06 0.50 7.85 -51.93 -0.41 0.10 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.27 3.68 -51.93 -0.19 1.08 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.56 5.13 -51.93 -0.27 0.30 16 39 H 0.08 0.42 7.89 -51.93 -0.41 0.01 16 40 H 0.08 0.48 5.21 -51.93 -0.27 0.21 16 41 H 0.10 0.73 5.07 -51.93 -0.26 0.47 16 42 H 0.21 1.21 1.86 -57.91 -0.11 1.10 16 43 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.23 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.18 1.57 7.75 -52.49 -0.41 1.17 16 46 H 0.10 1.84 7.36 -51.93 -0.38 1.45 16 47 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 LS Contribution 353.64 15.07 5.33 5.33 Total: -1.00 -35.72 353.64 -8.96 -44.68 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.53 Total: 8.34 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -4.91 Total: -3.19 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.77 Total: -62.78 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.72 -8.96 -44.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088398708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.859 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds