Wall clock time and date at job start Wed Apr 1 2020 02:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00018 * 2 1 4 4 H 1.48499 * 109.47212 * 270.00042 * 3 2 1 5 5 H 1.48494 * 109.47238 * 30.00569 * 3 2 1 6 6 H 1.48503 * 109.47171 * 150.00555 * 3 2 1 7 7 C 1.38811 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00419 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00197 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.66655 * 325.49487 * 10 9 7 12 12 C 1.53477 * 109.67250 * 205.00087 * 10 9 7 13 13 C 1.52450 * 109.15138 * 126.01339 * 12 10 9 14 14 C 1.53116 * 109.68129 * 43.93153 * 13 12 10 15 15 C 1.53427 * 109.32942 * 77.06149 * 14 13 12 16 16 C 1.53417 * 108.49851 * 287.68010 * 15 14 13 17 17 N 1.46070 * 110.10659 * 316.34122 * 16 15 14 18 18 C 1.34782 * 120.16904 * 293.08391 * 17 16 15 19 19 O 1.21579 * 120.00012 * 158.60660 * 18 17 16 20 20 C 1.47603 * 119.99802 * 338.60589 * 18 17 16 21 21 C 1.41818 * 119.98344 * 24.43540 * 20 18 17 22 22 C 1.35638 * 119.60253 * 179.97438 * 21 20 18 23 23 C 1.41051 * 119.39942 * 0.02562 * 22 21 20 24 24 N 1.32183 * 133.25788 * 180.02562 * 23 22 21 25 25 N 1.28642 * 109.56876 * 179.97438 * 24 23 22 26 26 C 1.30724 * 110.34551 * 0.02562 * 25 24 23 27 27 N 1.36251 * 107.44776 * 359.97438 * 26 25 24 28 28 C 1.35847 * 133.52654 * 180.33284 * 27 26 25 29 29 C 1.47124 * 119.65902 * 113.05985 * 17 16 15 30 30 H 0.96999 * 119.99790 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99454 * 359.97438 * 9 7 2 32 32 H 1.09010 * 109.52252 * 245.91125 * 12 10 9 33 33 H 1.09000 * 109.52801 * 6.10092 * 12 10 9 34 34 H 1.09005 * 109.43750 * 163.99957 * 13 12 10 35 35 H 1.09004 * 109.43214 * 283.86810 * 13 12 10 36 36 H 1.09003 * 109.49277 * 317.10677 * 14 13 12 37 37 H 1.09003 * 109.49544 * 197.01704 * 14 13 12 38 38 H 1.08994 * 109.63488 * 167.97382 * 15 14 13 39 39 H 1.09001 * 109.63158 * 47.38049 * 15 14 13 40 40 H 1.08996 * 109.36453 * 196.14702 * 16 15 14 41 41 H 1.09003 * 109.36852 * 76.53342 * 16 15 14 42 42 H 1.08002 * 120.19742 * 359.97438 * 21 20 18 43 43 H 1.07993 * 120.29857 * 179.97438 * 22 21 20 44 44 H 1.07993 * 126.27606 * 180.02562 * 26 25 24 45 45 H 1.07994 * 119.81492 * 359.93127 * 28 27 26 46 46 H 1.09000 * 109.84781 * 168.34141 * 29 17 16 47 47 H 1.09000 * 109.85119 * 47.35112 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0022 11 1 3.5632 -3.2120 0.5790 12 6 5.5050 -2.2640 0.6082 13 6 5.7078 -3.2630 1.7417 14 6 5.2090 -4.6440 1.3074 15 6 6.2435 -5.2874 0.3748 16 6 6.1982 -4.5624 -0.9765 17 7 4.8123 -4.3403 -1.3809 18 6 4.0218 -5.3865 -1.6929 19 8 2.8125 -5.2691 -1.6489 20 6 4.6244 -6.6747 -2.0880 21 6 5.9380 -7.0020 -1.6654 22 6 6.4839 -8.1881 -2.0326 23 6 5.7348 -9.0777 -2.8306 24 7 5.9864 -10.2733 -3.3350 25 7 4.9671 -10.6814 -4.0054 26 6 4.0144 -9.7869 -3.9735 27 7 4.4636 -8.7380 -3.2287 28 6 3.9153 -7.5521 -2.8566 29 6 4.2835 -2.9689 -1.4454 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 6.2652 -2.4220 -0.1570 33 1 5.5848 -1.2493 0.9981 34 1 6.7679 -3.3213 1.9885 35 1 5.1494 -2.9349 2.6185 36 1 4.2603 -4.5391 0.7811 37 1 5.0703 -5.2736 2.1864 38 1 6.0037 -6.3412 0.2333 39 1 7.2386 -5.1904 0.8092 40 1 6.7015 -5.1691 -1.7292 41 1 6.7073 -3.6025 -0.8890 42 1 6.5002 -6.3109 -1.0549 43 1 7.4835 -8.4486 -1.7174 44 1 3.0481 -9.8652 -4.4493 45 1 2.9139 -7.3007 -3.1730 46 1 3.3196 -2.9675 -1.9543 47 1 4.9849 -2.3264 -1.9777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088398708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:20 Heat of formation + Delta-G solvation = 142.488797 kcal Electronic energy + Delta-G solvation = -30974.739819 eV Core-core repulsion = 26968.987525 eV Total energy + Delta-G solvation = -4005.752294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.69477 -42.13809 -39.45497 -38.74105 -36.97339 -35.37837 -34.93963 -34.00916 -32.61947 -31.80086 -30.54244 -28.82738 -28.09231 -26.46492 -25.09374 -24.71862 -23.62443 -23.49790 -22.65067 -21.39764 -20.64565 -19.63071 -19.05849 -18.59574 -17.98004 -17.74248 -17.35225 -16.89145 -16.63791 -16.28973 -16.15888 -15.84470 -15.77171 -15.32142 -15.03093 -14.75063 -14.54588 -14.18372 -13.73854 -13.70924 -13.60849 -13.36870 -13.11677 -12.98666 -12.95015 -12.70603 -12.43448 -12.33066 -12.10916 -12.06824 -11.85061 -11.81629 -11.73621 -11.51722 -11.20299 -11.07301 -10.94717 -10.91001 -10.60951 -9.87302 -9.29741 -9.08664 -8.01131 -5.35703 -0.68092 -0.18726 1.03144 1.32416 1.37277 1.42915 1.50147 1.74503 1.93402 2.29821 2.49352 2.98052 3.18751 3.29731 3.43915 3.50566 3.70086 3.74022 3.80143 3.83788 3.91999 4.01188 4.09483 4.18912 4.32985 4.38604 4.43474 4.52956 4.63592 4.66684 4.76671 4.79234 4.84264 4.91115 4.94801 4.97413 5.10451 5.16554 5.21362 5.21978 5.31891 5.42291 5.46349 5.62970 5.65616 5.71396 5.81648 6.23292 6.36051 6.99034 7.10107 7.33284 7.84905 8.04922 9.21189 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.002977 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.120969 B = 9403.305403 C =10457.994217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.070 4.070 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.243 1.243 7 C -0.227 4.227 8 H 0.041 0.959 9 N -0.745 5.745 10 C 0.157 3.843 11 H 0.043 0.957 12 C -0.131 4.131 13 C -0.108 4.108 14 C -0.137 4.137 15 C -0.161 4.161 16 C 0.062 3.938 17 N -0.592 5.592 18 C 0.565 3.435 19 O -0.572 6.572 20 C -0.146 4.146 21 C -0.110 4.110 22 C -0.083 4.083 23 C 0.190 3.810 24 N -0.331 5.331 25 N -0.290 5.290 26 C 0.135 3.865 27 N -0.400 5.400 28 C 0.132 3.868 29 C 0.105 3.895 30 H 0.257 0.743 31 H 0.368 0.632 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.237 0.763 43 H 0.195 0.805 44 H 0.267 0.733 45 H 0.189 0.811 46 H 0.045 0.955 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.948 -13.142 -2.869 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.228 1.228 6 H -0.168 1.168 7 C -0.358 4.358 8 H 0.059 0.941 9 N -0.388 5.388 10 C 0.049 3.951 11 H 0.061 0.939 12 C -0.168 4.168 13 C -0.146 4.146 14 C -0.174 4.174 15 C -0.198 4.198 16 C -0.058 4.058 17 N -0.323 5.323 18 C 0.354 3.646 19 O -0.452 6.452 20 C -0.153 4.153 21 C -0.133 4.133 22 C -0.104 4.104 23 C -0.060 4.060 24 N -0.175 5.175 25 N -0.126 5.126 26 C -0.148 4.148 27 N -0.080 5.080 28 C 0.006 3.994 29 C -0.020 4.020 30 H 0.065 0.935 31 H 0.203 0.797 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.252 0.748 43 H 0.212 0.788 44 H 0.283 0.717 45 H 0.205 0.795 46 H 0.063 0.937 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 21.844 -14.646 -3.285 26.504 hybrid contribution -1.945 2.121 0.136 2.881 sum 19.899 -12.525 -3.149 23.723 Atomic orbital electron populations 1.69932 1.07537 1.26661 1.59830 1.25618 0.96141 1.01645 1.02633 0.85301 0.78735 0.78850 0.78163 1.20258 1.22752 1.16757 1.18927 0.83002 0.92799 1.41067 0.94132 1.42829 1.02172 1.03950 1.89897 1.21331 0.93061 0.86758 0.93999 0.93934 1.22260 0.95250 0.99893 0.99416 1.21464 1.02328 0.93985 0.96791 1.21936 0.99458 0.96561 0.99485 1.22856 1.02327 1.00034 0.94619 1.22876 0.80929 1.05007 0.96999 1.47692 1.13311 1.05218 1.66059 1.18103 0.85741 0.83955 0.76841 1.90886 1.16475 1.83955 1.53892 1.19462 0.97177 0.95236 1.03443 1.23795 0.93161 0.98057 0.98256 1.20708 1.01818 0.91085 0.96807 1.23226 0.85476 0.95695 1.01615 1.74830 1.19872 1.08286 1.14492 1.74094 0.98085 1.24687 1.15721 1.27443 1.03995 0.83232 1.00116 1.43943 1.14361 1.14593 1.35058 1.21808 0.99624 0.82227 0.95699 1.22592 0.98957 0.80929 0.99478 0.93463 0.79747 0.87872 0.92186 0.88361 0.94423 0.93427 0.92204 0.89243 0.85495 0.86413 0.85977 0.74799 0.78824 0.71721 0.79452 0.93666 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.79 13.97 21.65 0.30 -64.49 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.96 44.63 27.73 68.60 1.90 46.53 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.24 -9.79 6.52 99.48 0.65 -9.15 16 7 C -0.23 -13.05 10.43 84.03 0.88 -12.18 16 8 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 9 N -0.74 -33.04 4.89 -321.18 -1.57 -34.61 16 10 C 0.16 5.37 2.40 45.36 0.11 5.48 16 11 H 0.04 1.76 5.39 -2.39 -0.01 1.74 16 12 C -0.13 -2.93 5.24 30.57 0.16 -2.77 16 13 C -0.11 -2.05 5.67 30.45 0.17 -1.87 16 14 C -0.14 -2.63 5.44 30.78 0.17 -2.47 16 15 C -0.16 -1.50 4.67 30.88 0.14 -1.35 16 16 C 0.06 0.66 4.71 86.60 0.41 1.07 16 17 N -0.59 -13.21 1.72 -829.78 -1.43 -14.64 16 18 C 0.57 15.17 6.45 86.71 0.56 15.73 16 19 O -0.57 -22.07 16.23 -3.96 -0.06 -22.14 16 20 C -0.15 -2.78 5.78 -20.33 -0.12 -2.90 16 21 C -0.11 -1.29 6.30 22.55 0.14 -1.15 16 22 C -0.08 -1.06 10.09 22.36 0.23 -0.83 16 23 C 0.19 3.94 7.92 134.12 1.06 5.00 16 24 N -0.33 -8.67 12.29 -55.22 -0.68 -9.35 16 25 N -0.29 -7.33 12.18 -59.41 -0.72 -8.05 16 26 C 0.14 2.48 12.97 179.81 2.33 4.81 16 27 N -0.40 -7.74 2.94 -355.22 -1.04 -8.79 16 28 C 0.13 2.50 10.52 83.67 0.88 3.38 16 29 C 0.11 3.19 5.45 86.47 0.47 3.66 16 30 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 31 H 0.37 15.15 5.39 -92.71 -0.50 14.66 16 32 H 0.10 1.51 4.49 -2.38 -0.01 1.50 16 33 H 0.06 1.47 7.61 -2.39 -0.02 1.45 16 34 H 0.10 1.13 7.85 -2.38 -0.02 1.11 16 35 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.05 1.36 3.68 -2.39 -0.01 1.35 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 0.77 5.13 -2.39 -0.01 0.76 16 39 H 0.13 0.26 7.89 -2.39 -0.02 0.24 16 40 H 0.12 0.60 5.21 -2.39 -0.01 0.59 16 41 H 0.12 0.89 5.07 -2.39 -0.01 0.88 16 42 H 0.24 1.39 1.86 -8.01 -0.01 1.37 16 43 H 0.19 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.27 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.19 3.32 7.75 -2.91 -0.02 3.30 16 46 H 0.04 1.84 7.36 -2.39 -0.02 1.83 16 47 H 0.10 2.39 7.97 -2.39 -0.02 2.37 16 Total: -1.00 -88.94 353.64 5.24 -83.70 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.48 Total: 21.87 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 8.06 Total: 9.95 kcal Atomic # 7 Polarization: -134.78 SS G_CDS: -5.15 Total: -139.92 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.06 Total: -22.14 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Total: -88.94 5.24 -83.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088398708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.193 kcal (2) G-P(sol) polarization free energy of solvation -88.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds