Wall clock time and date at job start Wed Apr 1 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00171 * 2 1 4 4 H 1.48495 * 109.47208 * 264.40310 * 3 2 1 5 5 H 1.48506 * 109.47243 * 24.40537 * 3 2 1 6 6 H 1.48500 * 109.46897 * 144.40355 * 3 2 1 7 7 C 1.38812 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99910 * 8.55517 * 7 2 1 9 9 N 1.36934 * 119.99859 * 188.55936 * 7 2 1 10 10 C 1.46927 * 120.63148 * 49.48871 * 9 7 2 11 11 C 1.53195 * 108.77260 * 126.41326 * 10 9 7 12 12 C 1.53036 * 109.31477 * 54.63422 * 11 10 9 13 13 C 1.53042 * 109.53767 * 298.63497 * 12 11 10 14 14 C 1.46928 * 120.62812 * 229.50594 * 9 7 2 15 15 H 1.08999 * 109.58132 * 113.65821 * 14 9 7 16 16 C 1.52995 * 109.58988 * 353.37967 * 14 9 7 17 17 N 1.46499 * 109.47344 * 60.12494 * 16 14 9 18 18 C 1.34773 * 120.00520 * 180.02562 * 17 16 14 19 19 O 1.21290 * 119.99814 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00687 * 180.02562 * 18 17 16 21 21 N 1.46498 * 109.47615 * 180.02562 * 20 18 17 22 22 N 1.39835 * 125.38381 * 269.96004 * 21 20 18 23 23 C 1.30239 * 110.09110 * 180.02562 * 22 21 20 24 24 C 1.45854 * 107.65550 * 359.97438 * 23 22 21 25 25 C 1.39993 * 134.25575 * 180.30258 * 24 23 22 26 26 C 1.37018 * 118.15499 * 180.20236 * 25 24 23 27 27 C 1.38797 * 119.64523 * 359.46430 * 26 25 24 28 28 N 1.31506 * 121.59309 * 0.28168 * 27 26 25 29 29 C 1.32769 * 121.46950 * 359.97438 * 28 27 26 30 30 H 0.96998 * 119.99774 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.58423 * 246.20024 * 10 9 7 32 32 H 1.09003 * 109.58515 * 6.48211 * 10 9 7 33 33 H 1.09004 * 109.49340 * 174.59114 * 11 10 9 34 34 H 1.08997 * 109.49736 * 294.67710 * 11 10 9 35 35 H 1.08997 * 109.45946 * 58.65493 * 12 11 10 36 36 H 1.09004 * 109.45767 * 178.62374 * 12 11 10 37 37 H 1.09001 * 109.49497 * 301.40719 * 13 12 11 38 38 H 1.09006 * 109.49259 * 181.31842 * 13 12 11 39 39 H 1.09002 * 109.47164 * 300.12783 * 16 14 9 40 40 H 1.09001 * 109.47333 * 180.12861 * 16 14 9 41 41 H 0.97002 * 120.00024 * 0.02562 * 17 16 14 42 42 H 1.09002 * 109.46917 * 59.99748 * 20 18 17 43 43 H 1.09001 * 109.46875 * 300.00257 * 20 18 17 44 44 H 1.07998 * 126.16918 * 179.97438 * 23 22 21 45 45 H 1.07999 * 120.92266 * 359.96945 * 25 24 23 46 46 H 1.08008 * 120.17562 * 179.74833 * 26 25 24 47 47 H 1.08002 * 119.20747 * 180.25985 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6160 1.9781 -1.3933 5 1 1.3936 2.6839 0.5785 6 1 3.4837 1.4770 0.8150 7 6 2.0103 -1.2022 -0.0005 8 1 1.4792 -2.1322 -0.1401 9 7 3.3682 -1.2089 0.1760 10 6 3.9827 -0.4655 1.2844 11 6 4.8744 -1.4207 2.0840 12 6 5.8787 -2.0854 1.1398 13 6 5.1272 -2.8975 0.0826 14 6 4.2383 -1.9593 -0.7397 15 1 4.8604 -1.2645 -1.3041 16 6 3.3809 -2.7801 -1.7050 17 7 2.5220 -1.8816 -2.4803 18 6 1.6746 -2.3855 -3.3992 19 8 1.6228 -3.5831 -3.5840 20 6 0.7915 -1.4612 -4.1971 21 7 -0.0305 -2.2473 -5.1204 22 7 0.3258 -2.5937 -6.4275 23 6 -0.6236 -3.2939 -6.9794 24 6 -1.6935 -3.4389 -5.9988 25 6 -2.9409 -4.0744 -6.0006 26 6 -3.7073 -3.9976 -4.8674 27 6 -3.2286 -3.3113 -3.7600 28 7 -2.0525 -2.7231 -3.7695 29 6 -1.2680 -2.7592 -4.8401 30 1 -0.4850 0.8400 0.0004 31 1 4.5857 0.3508 0.8869 32 1 3.2030 -0.0627 1.9309 33 1 5.4108 -0.8614 2.8507 34 1 4.2574 -2.1854 2.5557 35 1 6.4789 -1.3186 0.6498 36 1 6.5305 -2.7471 1.7103 37 1 4.5078 -3.6484 0.5731 38 1 5.8436 -3.3895 -0.5754 39 1 2.7616 -3.4760 -1.1390 40 1 4.0282 -3.3377 -2.3818 41 1 2.5631 -0.9238 -2.3322 42 1 1.4111 -0.7659 -4.7635 43 1 0.1445 -0.9029 -3.5204 44 1 -0.6194 -3.6948 -7.9822 45 1 -3.2911 -4.6071 -6.8724 46 1 -4.6768 -4.4725 -4.8345 47 1 -3.8367 -3.2589 -2.8691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480321421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:34 Heat of formation + Delta-G solvation = 102.023515 kcal Electronic energy + Delta-G solvation = -30618.121772 eV Core-core repulsion = 26610.614772 eV Total energy + Delta-G solvation = -4007.507000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 11.51 seconds Orbital eigenvalues (eV) -41.38458 -39.18748 -38.08443 -37.65611 -34.22673 -33.57216 -33.00505 -31.70257 -30.89117 -30.71487 -29.95432 -27.55349 -25.85520 -24.40027 -23.82457 -22.55738 -22.53296 -21.29055 -20.63762 -19.89543 -19.31152 -17.58716 -17.06832 -16.88208 -16.34661 -16.01531 -15.57900 -15.22581 -15.06242 -14.78732 -14.39180 -14.04333 -13.75666 -13.71237 -13.63903 -13.21756 -13.12173 -13.09297 -12.53098 -12.50106 -12.33382 -12.22966 -12.18326 -11.68928 -11.60209 -11.24408 -10.89237 -10.86923 -10.65240 -10.58048 -10.50923 -10.15539 -9.86294 -9.64067 -9.44208 -9.35825 -9.21191 -8.83211 -8.57891 -8.19778 -8.11353 -6.65766 -6.01635 -3.64926 0.93005 1.44274 2.23548 2.59968 3.21127 3.25463 3.38455 3.41120 3.83405 4.01630 4.36382 4.42611 4.44435 4.74888 4.86050 4.91437 5.08387 5.19990 5.29505 5.32410 5.35439 5.43005 5.44803 5.49479 5.58101 5.68923 5.73573 5.78678 5.89850 5.99298 6.15702 6.18666 6.20760 6.25274 6.35167 6.42726 6.46737 6.48743 6.58885 6.63687 6.78646 6.79652 6.94907 7.00436 7.19859 7.59955 8.04398 8.14573 8.25495 8.42769 8.87570 8.90165 9.60164 10.09026 11.10333 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.003388 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.867144 B = 8263.084200 C = 9050.100883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.044 3.956 3 Si 0.844 3.156 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.236 1.236 7 C -0.265 4.265 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.138 3.862 11 C -0.139 4.139 12 C -0.108 4.108 13 C -0.128 4.128 14 C 0.160 3.840 15 H 0.035 0.965 16 C 0.142 3.858 17 N -0.684 5.684 18 C 0.501 3.499 19 O -0.552 6.552 20 C 0.122 3.878 21 N -0.368 5.368 22 N -0.230 5.230 23 C 0.076 3.924 24 C -0.233 4.233 25 C 0.000 4.000 26 C -0.222 4.222 27 C 0.169 3.831 28 N -0.485 5.485 29 C 0.329 3.671 30 H 0.263 0.737 31 H 0.030 0.970 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.409 0.591 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.198 0.802 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -4.074 -9.210 10.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.159 4.159 3 Si 0.672 3.328 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.161 1.161 7 C -0.395 4.395 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.013 3.987 11 C -0.178 4.178 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.053 0.947 16 C 0.018 3.982 17 N -0.334 5.334 18 C 0.285 3.715 19 O -0.431 6.431 20 C -0.003 4.003 21 N -0.157 5.157 22 N -0.042 5.042 23 C -0.123 4.123 24 C -0.243 4.243 25 C -0.028 4.028 26 C -0.244 4.244 27 C -0.001 4.001 28 N -0.199 5.199 29 C 0.090 3.910 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.246 0.754 42 H 0.133 0.867 43 H 0.150 0.850 44 H 0.215 0.785 45 H 0.154 0.846 46 H 0.156 0.844 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.208 -3.701 -8.674 9.508 hybrid contribution -0.698 0.683 -0.248 1.008 sum 0.510 -3.018 -8.922 9.432 Atomic orbital electron populations 1.69810 1.05799 1.26629 1.51311 1.25765 0.95059 0.97739 0.97291 0.87714 0.81611 0.84347 0.79097 1.21304 1.22669 1.16092 1.18671 0.80320 0.93263 1.47203 0.90639 1.44356 1.03255 1.58127 1.27307 1.21659 0.95139 0.92381 0.89496 1.22075 0.97966 1.00023 0.97745 1.21360 0.97343 0.98706 0.97139 1.21922 0.98422 0.98514 0.97882 1.20844 0.91259 0.92369 0.90159 0.94717 1.21182 0.92153 0.92469 0.92403 1.45742 1.39337 1.11732 1.36627 1.20478 0.80958 0.89178 0.80897 1.90665 1.68400 1.15603 1.68452 1.21510 0.95059 0.92367 0.91375 1.47599 1.12052 1.46435 1.09635 1.76651 1.21977 1.14892 0.90680 1.24929 0.89854 0.97991 0.99508 1.20491 0.98789 1.08644 0.96403 1.20680 0.90615 0.93501 0.98023 1.21625 1.02299 1.05565 0.94929 1.22787 0.89763 0.89792 0.97725 1.66857 1.05220 1.21971 1.25809 1.18948 0.87828 0.93386 0.90853 0.92665 0.95254 0.91759 0.93255 0.92099 0.92809 0.93223 0.91751 0.92706 0.91458 0.92736 0.75377 0.86652 0.84990 0.78504 0.84633 0.84434 0.81901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 13.97 55.49 0.78 -24.50 16 2 C 0.04 1.13 5.28 -17.43 -0.09 1.03 16 3 Si 0.84 19.24 26.62 -169.99 -4.53 14.71 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.24 -4.98 3.87 56.52 0.22 -4.76 16 7 C -0.27 -6.61 6.59 -15.06 -0.10 -6.71 16 8 H 0.08 2.19 7.11 -52.49 -0.37 1.82 16 9 N -0.60 -12.81 2.41 -164.78 -0.40 -13.21 16 10 C 0.14 2.72 4.03 -3.71 -0.01 2.71 16 11 C -0.14 -2.30 6.08 -26.61 -0.16 -2.46 16 12 C -0.11 -1.59 5.88 -26.69 -0.16 -1.75 16 13 C -0.13 -2.02 5.37 -26.62 -0.14 -2.16 16 14 C 0.16 2.92 3.01 -67.61 -0.20 2.71 16 15 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 16 C 0.14 2.74 4.50 -4.04 -0.02 2.72 16 17 N -0.68 -13.68 4.13 -60.30 -0.25 -13.93 16 18 C 0.50 10.49 7.90 -10.99 -0.09 10.41 16 19 O -0.55 -13.35 16.43 5.55 0.09 -13.25 16 20 C 0.12 2.24 6.89 -5.20 -0.04 2.21 16 21 N -0.37 -6.91 3.13 -61.60 -0.19 -7.10 16 22 N -0.23 -3.88 12.40 31.85 0.39 -3.48 16 23 C 0.08 1.03 12.29 -15.18 -0.19 0.84 16 24 C -0.23 -3.51 6.38 -105.19 -0.67 -4.18 16 25 C 0.00 0.00 10.18 -39.37 -0.40 -0.40 16 26 C -0.22 -2.52 10.04 -39.82 -0.40 -2.92 16 27 C 0.17 2.44 11.14 -17.48 -0.19 2.24 16 28 N -0.49 -9.23 10.40 -12.34 -0.13 -9.36 16 29 C 0.33 6.15 7.97 -156.11 -1.24 4.91 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.03 0.58 6.36 -51.93 -0.33 0.25 16 32 H 0.06 1.38 6.49 -51.93 -0.34 1.04 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.48 7.47 -51.93 -0.39 1.09 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.41 8.23 7.32 -40.82 -0.30 7.93 16 42 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.13 2.55 8.14 -51.93 -0.42 2.13 16 44 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 47 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -33.68 377.81 -9.61 -43.29 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -6.96 Total: 11.93 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -4.11 Total: 9.21 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: 0.20 Total: -71.58 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.53 Total: 14.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.68 -9.61 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480321421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.310 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.51 seconds