Wall clock time and date at job start Wed Apr 1 2020 01:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35837 * 116.99691 * 2 1 4 4 C 1.39469 * 119.74560 * 0.02562 * 3 2 1 5 5 C 1.36298 * 120.56279 * 179.97438 * 4 3 2 6 6 C 1.40189 * 119.90321 * 0.02562 * 5 4 3 7 7 C 1.41516 * 133.26563 * 179.97438 * 6 5 4 8 8 C 1.35921 * 107.76402 * 180.02562 * 7 6 5 9 9 C 1.46912 * 125.44624 * 180.26538 * 8 7 6 10 10 O 1.21665 * 119.99948 * 359.69430 * 9 8 7 11 11 N 1.34781 * 120.00126 * 179.69550 * 9 8 7 12 12 C 1.46502 * 119.99961 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46691 * 180.02562 * 12 11 9 14 14 H 1.08995 * 109.46864 * 294.99785 * 13 12 11 15 15 N 1.46495 * 109.47479 * 55.00293 * 13 12 11 16 16 C 1.36935 * 120.00107 * 204.99855 * 15 13 12 17 17 H 1.08001 * 119.99609 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00265 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99910 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00022 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47299 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46908 * 120.00487 * 20 18 16 23 23 H 1.48500 * 109.47264 * 240.00063 * 20 18 16 24 24 C 1.52998 * 109.46786 * 175.00178 * 13 12 11 25 25 C 1.53002 * 117.49910 * 248.74732 * 24 13 12 26 26 C 1.53001 * 117.49914 * 180.08627 * 24 13 12 27 27 N 1.38315 * 109.10747 * 0.02562 * 8 7 6 28 28 H 0.97002 * 125.62419 * 180.02562 * 27 8 7 29 29 C 1.37521 * 108.74422 * 359.97438 * 27 8 7 30 30 C 1.38218 * 119.73930 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46971 * 59.99709 * 1 2 3 32 32 H 1.09001 * 109.46605 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46934 * 299.99377 * 1 2 3 34 34 H 1.08000 * 119.71636 * 359.95889 * 4 3 2 35 35 H 1.07992 * 120.04816 * 179.97438 * 5 4 3 36 36 H 1.08005 * 126.11703 * 0.02562 * 7 6 5 37 37 H 0.96993 * 119.99786 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.46915 * 300.00007 * 12 11 9 39 39 H 1.08999 * 109.46870 * 59.99870 * 12 11 9 40 40 H 0.96999 * 119.99815 * 24.99192 * 15 13 12 41 41 H 0.97004 * 120.00285 * 179.97438 * 19 18 16 42 42 H 1.09000 * 115.55619 * 34.41202 * 24 13 12 43 43 H 1.08994 * 117.49906 * 359.97438 * 25 24 13 44 44 H 1.08997 * 117.50446 * 145.02494 * 25 24 13 45 45 H 1.09002 * 117.50130 * 214.97996 * 26 24 13 46 46 H 1.08999 * 117.49754 * 359.97438 * 26 24 13 47 47 H 1.08002 * 120.11697 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2808 2.3766 0.0005 5 6 1.8822 3.5998 0.0011 6 6 3.2811 3.6908 0.0005 7 6 4.1820 4.7821 0.0004 8 6 5.4442 4.2778 -0.0008 9 6 6.6795 5.0731 0.0042 10 8 6.6206 6.2884 0.0044 11 7 7.8780 4.4566 0.0087 12 6 9.1097 5.2497 0.0131 13 6 10.3194 4.3128 0.0169 14 1 10.3375 3.7468 0.9482 15 7 10.2244 3.3879 -1.1151 16 6 10.8535 2.1728 -1.0611 17 1 11.4195 1.8963 -0.1838 18 6 10.7631 1.2961 -2.1336 19 7 10.0730 1.6329 -3.2024 20 14 11.6220 -0.3611 -2.0602 21 1 12.3262 -0.4966 -0.7598 22 1 10.6167 -1.4460 -2.1937 23 1 12.6054 -0.4585 -3.1686 24 6 11.6028 5.1368 -0.1041 25 6 12.3989 5.0174 -1.4053 26 6 12.9310 4.3774 -0.1205 27 7 5.3798 2.8962 -0.0020 28 1 6.1411 2.2951 -0.0026 29 6 4.0583 2.5154 -0.0010 30 6 3.4263 1.2765 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 0.2029 2.3099 0.0003 35 1 1.2818 4.4975 0.0011 36 1 3.9145 5.8285 0.0011 37 1 7.9249 3.4878 0.0082 38 1 9.1403 5.8783 -0.8768 39 1 9.1338 5.8785 0.9031 40 1 9.7156 3.6361 -1.9028 41 1 10.0100 1.0204 -3.9520 42 1 11.5853 6.1095 0.3875 43 1 12.0086 4.3515 -2.1748 44 1 12.9055 5.9112 -1.7693 45 1 13.7873 4.8505 0.3602 46 1 12.8904 3.2908 -0.0446 47 1 4.0123 0.3693 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661151921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:50 Heat of formation + Delta-G solvation = 26.064495 kcal Electronic energy + Delta-G solvation = -29099.450787 eV Core-core repulsion = 25056.357205 eV Total energy + Delta-G solvation = -4043.093582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59836 -39.72225 -38.94640 -37.63185 -35.77637 -34.62599 -33.34236 -32.12690 -31.04771 -29.73501 -29.18015 -28.03702 -27.04233 -24.51113 -23.47885 -22.49672 -21.96256 -21.53972 -21.01226 -20.05473 -19.22967 -18.59007 -18.01566 -17.23160 -16.48285 -15.94336 -15.81189 -15.54944 -15.51706 -15.25500 -14.88334 -14.64279 -14.17343 -13.96081 -13.80785 -13.63823 -13.51099 -13.28464 -13.09325 -12.94803 -12.42588 -12.25793 -12.05967 -11.99850 -11.37866 -11.24158 -10.96359 -10.92716 -10.91785 -10.90235 -10.57746 -10.15920 -10.02319 -9.75339 -9.67040 -9.52110 -9.23406 -9.06966 -8.81254 -8.27657 -7.58348 -7.15906 -5.91865 -3.22747 0.76718 1.48762 2.14089 2.71315 3.29682 3.32885 3.39310 3.40592 3.41942 3.50643 3.77079 4.42606 4.54297 4.57684 4.79103 4.82638 4.90966 4.92946 5.06230 5.21485 5.27367 5.28298 5.33323 5.38916 5.46665 5.50136 5.67915 5.77664 5.79329 5.82857 5.90825 5.97756 6.00313 6.13968 6.30458 6.34120 6.34429 6.36141 6.57686 6.60751 6.64441 6.76304 6.85659 6.94691 7.22762 7.24534 7.37757 7.58512 7.76015 8.24702 8.34260 9.37454 9.90434 10.26706 11.29207 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.002835 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.460316 B = 9872.943122 C =12059.482938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.151 3.849 4 C -0.226 4.226 5 C -0.022 4.022 6 C -0.150 4.150 7 C -0.105 4.105 8 C 0.020 3.980 9 C 0.579 3.421 10 O -0.536 6.536 11 N -0.708 5.708 12 C 0.119 3.881 13 C 0.191 3.809 14 H 0.057 0.943 15 N -0.718 5.718 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.007 4.007 19 N -0.926 5.926 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.178 4.178 25 C -0.162 4.162 26 C -0.175 4.175 27 N -0.571 5.571 28 H 0.424 0.576 29 C 0.153 3.847 30 C -0.173 4.173 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.155 0.845 37 H 0.406 0.594 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.697 1.970 7.902 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.104 3.896 4 C -0.246 4.246 5 C -0.041 4.041 6 C -0.154 4.154 7 C -0.132 4.132 8 C -0.089 4.089 9 C 0.365 3.635 10 O -0.413 6.413 11 N -0.359 5.359 12 C -0.005 4.005 13 C 0.080 3.920 14 H 0.075 0.925 15 N -0.360 5.360 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.574 5.574 20 Si 0.733 3.267 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.200 4.200 25 C -0.200 4.200 26 C -0.212 4.212 27 N -0.176 5.176 28 H 0.263 0.737 29 C 0.041 3.959 30 C -0.195 4.195 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.172 0.828 37 H 0.242 0.758 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.136 0.864 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.121 0.879 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.360 2.446 7.939 17.462 hybrid contribution 0.669 -1.541 -0.412 1.730 sum -14.691 0.905 7.527 16.532 Atomic orbital electron populations 1.23049 0.78364 1.03814 1.01391 1.86041 1.21338 1.26905 1.88721 1.18458 0.91166 0.84044 0.95929 1.20733 0.99856 0.92040 1.11951 1.20168 0.92099 0.97189 0.94596 1.18137 0.93411 0.92510 1.11362 1.20808 0.89426 0.98861 1.04068 1.20227 0.95501 0.81878 1.11334 1.17147 0.82121 0.86993 0.77208 1.90817 1.86805 1.12619 1.51103 1.45886 1.05321 1.11203 1.73474 1.21654 0.82919 0.94000 1.01933 1.20006 0.89361 0.89644 0.92971 0.92463 1.42498 1.61566 1.15597 1.16352 1.19201 1.25217 0.92102 1.00782 0.90983 1.24719 1.00562 0.98609 0.96476 1.69664 1.44797 1.36583 1.06330 0.86209 0.78921 0.84255 0.77319 1.20564 1.21935 1.21834 1.23052 0.94242 0.99794 1.02881 1.22916 1.02743 1.01823 0.92478 1.22856 0.95410 1.00698 1.02278 1.42054 1.06384 1.06017 1.63176 0.73680 1.17793 0.83512 0.94119 1.00517 1.18966 0.91590 0.95525 1.13390 0.92574 0.88371 0.92628 0.85363 0.85365 0.82783 0.75827 0.91261 0.91413 0.77932 0.93426 0.89529 0.86355 0.91224 0.90973 0.87938 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.80 101.05 0.99 1.18 16 2 O -0.32 -3.48 10.48 -19.23 -0.20 -3.68 16 3 C 0.15 1.79 6.68 -39.13 -0.26 1.53 16 4 C -0.23 -2.31 8.95 -39.82 -0.36 -2.67 16 5 C -0.02 -0.24 10.05 -39.55 -0.40 -0.63 16 6 C -0.15 -1.99 6.16 -106.90 -0.66 -2.65 16 7 C -0.11 -1.47 10.53 -39.16 -0.41 -1.88 16 8 C 0.02 0.30 6.97 -82.26 -0.57 -0.28 16 9 C 0.58 9.66 7.79 -12.75 -0.10 9.56 16 10 O -0.54 -10.25 16.84 5.22 0.09 -10.16 16 11 N -0.71 -11.30 5.38 -61.54 -0.33 -11.63 16 12 C 0.12 1.93 5.22 -4.04 -0.02 1.91 16 13 C 0.19 3.36 2.86 -67.93 -0.19 3.16 16 14 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 15 N -0.72 -15.32 3.08 -53.43 -0.16 -15.48 16 16 C -0.24 -5.82 8.15 -15.06 -0.12 -5.95 16 17 H 0.07 1.73 6.91 -52.49 -0.36 1.36 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.93 -25.61 13.06 55.49 0.72 -24.89 16 20 Si 0.90 20.91 29.55 -169.99 -5.02 15.89 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.18 -3.00 5.70 -90.62 -0.52 -3.51 16 25 C -0.16 -2.97 9.74 -26.69 -0.26 -3.23 16 26 C -0.18 -3.05 9.87 -26.69 -0.26 -3.31 16 27 N -0.57 -7.84 6.08 -7.36 -0.04 -7.89 16 28 H 0.42 5.33 8.12 -40.82 -0.33 5.00 16 29 C 0.15 2.10 7.25 -83.99 -0.61 1.50 16 30 C -0.17 -2.24 10.00 -39.27 -0.39 -2.64 16 31 H 0.06 0.31 7.64 -51.93 -0.40 -0.08 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.30 7.64 -51.93 -0.40 -0.10 16 34 H 0.13 0.95 6.25 -52.49 -0.33 0.62 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 37 H 0.41 6.40 7.19 -40.82 -0.29 6.10 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.39 9.15 7.80 -40.82 -0.32 8.83 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 43 H 0.12 2.60 6.68 -51.93 -0.35 2.25 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.10 1.99 6.22 -51.93 -0.32 1.67 16 47 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -29.42 390.87 -9.76 -39.18 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -6.46 Total: 20.95 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -4.24 Total: -8.18 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.18 Total: -59.89 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.11 Total: -13.84 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.42 -9.76 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661151921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.247 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds