Wall clock time and date at job start Wed Apr 1 2020 02:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47201 * 269.99968 * 3 2 1 5 5 H 1.48499 * 109.47355 * 29.99751 * 3 2 1 6 6 H 1.48507 * 109.47142 * 149.99601 * 3 2 1 7 7 C 1.38814 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99889 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.47745 * 125.82046 * 346.80903 * 9 7 2 11 11 C 1.54916 * 104.84127 * 204.25140 * 10 9 7 12 12 C 1.55159 * 101.57802 * 322.90382 * 11 10 9 13 13 C 1.47015 * 125.65020 * 166.81190 * 9 7 2 14 14 H 1.09000 * 109.88607 * 59.31872 * 13 9 7 15 15 C 1.53005 * 109.88003 * 298.31224 * 13 9 7 16 16 C 1.53001 * 109.47181 * 176.68194 * 15 13 9 17 17 C 1.52995 * 109.47390 * 185.08183 * 16 15 13 18 18 N 1.46499 * 109.47489 * 179.97438 * 17 16 15 19 19 C 1.34773 * 120.00119 * 179.97438 * 18 17 16 20 20 O 1.21566 * 120.00065 * 0.02562 * 19 18 17 21 21 C 1.47730 * 119.99843 * 180.02562 * 19 18 17 22 22 C 1.40255 * 119.88049 * 0.02562 * 21 19 18 23 23 C 1.36160 * 120.55322 * 180.02562 * 22 21 19 24 24 C 1.39905 * 119.98057 * 359.97438 * 23 22 21 25 25 N 1.34754 * 134.59187 * 180.02562 * 24 23 22 26 26 N 1.28646 * 109.28942 * 179.97438 * 25 24 23 27 27 N 1.28810 * 111.79491 * 0.03212 * 26 25 24 28 28 H 0.96998 * 125.94531 * 179.97438 * 27 26 25 29 29 C 1.37368 * 108.11457 * 359.96666 * 27 26 25 30 30 C 1.38620 * 134.89113 * 179.97438 * 29 27 26 31 31 H 0.96994 * 120.00335 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.43550 * 85.36891 * 10 9 7 33 33 H 1.09006 * 110.28954 * 323.05199 * 10 9 7 34 34 H 1.08998 * 111.00297 * 204.83392 * 11 10 9 35 35 H 1.08999 * 111.03724 * 80.99213 * 11 10 9 36 36 H 1.08997 * 110.72147 * 277.13688 * 12 11 10 37 37 H 1.08997 * 110.71359 * 153.86463 * 12 11 10 38 38 H 1.08993 * 109.47407 * 56.67746 * 15 13 9 39 39 H 1.09003 * 109.47152 * 296.67999 * 15 13 9 40 40 H 1.09000 * 109.47356 * 65.07932 * 16 15 13 41 41 H 1.08998 * 109.47329 * 305.08346 * 16 15 13 42 42 H 1.09000 * 109.47076 * 59.99577 * 17 16 15 43 43 H 1.09001 * 109.47034 * 299.99591 * 17 16 15 44 44 H 0.97008 * 119.99911 * 0.02562 * 18 17 16 45 45 H 1.08003 * 119.72109 * 359.97438 * 22 21 19 46 46 H 1.08004 * 120.00863 * 179.69970 * 23 22 21 47 47 H 1.08004 * 120.24541 * 359.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1170 -2.5537 0.2734 11 6 -0.2628 -4.0160 0.7636 12 6 0.7706 -4.7492 -0.1320 13 6 1.9046 -3.7118 -0.2715 14 1 2.6940 -3.9263 0.4488 15 6 2.4723 -3.7494 -1.6918 16 6 3.1453 -5.1015 -1.9364 17 6 3.8223 -5.0935 -3.3084 18 7 4.4672 -6.3880 -3.5424 19 6 5.1295 -6.6124 -4.6944 20 8 5.1923 -5.7406 -5.5393 21 6 5.7793 -7.9180 -4.9305 22 6 5.7049 -8.9222 -3.9543 23 6 6.2992 -10.1304 -4.1574 24 6 6.9907 -10.3779 -5.3481 25 7 7.6679 -11.4305 -5.8475 26 7 8.1223 -11.1294 -7.0128 27 7 7.8029 -9.9294 -7.3552 28 1 8.0386 -9.4934 -8.1890 29 6 7.0702 -9.3746 -6.3342 30 6 6.4639 -8.1465 -6.1204 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6967 -2.3991 -0.6366 33 1 -0.4368 -1.8595 1.0505 34 1 -1.2707 -4.3898 0.5834 35 1 0.0016 -4.1037 1.8174 36 1 0.3399 -4.9832 -1.1055 37 1 1.1328 -5.6529 0.3580 38 1 3.2055 -2.9518 -1.8113 39 1 1.6642 -3.6106 -2.4100 40 1 2.3950 -5.8916 -1.9061 41 1 3.8927 -5.2805 -1.1635 42 1 4.5726 -4.3034 -3.3387 43 1 3.0749 -4.9146 -4.0813 44 1 4.4168 -7.0838 -2.8683 45 1 5.1724 -8.7354 -3.0334 46 1 6.2404 -10.8957 -3.3976 47 1 6.5222 -7.3728 -6.8717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663123822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:38 Heat of formation + Delta-G solvation = 90.084532 kcal Electronic energy + Delta-G solvation = -28246.798706 eV Core-core repulsion = 24238.773993 eV Total energy + Delta-G solvation = -4008.024713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.73451 -40.28976 -38.02760 -37.71615 -35.67590 -34.37445 -33.11600 -32.27640 -31.15059 -31.01468 -29.39832 -28.14090 -25.62268 -24.64303 -24.00452 -23.74826 -22.93726 -21.60549 -21.14355 -20.13763 -19.26463 -19.04040 -18.58781 -17.21651 -16.78449 -16.68864 -16.39434 -15.79513 -15.28445 -15.04883 -14.72693 -14.57485 -14.41610 -14.15787 -13.80188 -13.64958 -13.00752 -12.73194 -12.65369 -12.38021 -12.31667 -12.05848 -11.92319 -11.77837 -11.70327 -11.47897 -11.31360 -11.04074 -10.83703 -10.75631 -10.58666 -10.29005 -10.07624 -9.99471 -9.77502 -9.61191 -9.60727 -9.60469 -9.26606 -8.97437 -8.57481 -6.76875 -5.72564 -3.07364 -0.20811 0.59866 1.60386 1.92622 2.49756 2.86208 3.26360 3.39968 3.43869 3.45488 3.46786 4.02173 4.22558 4.33915 4.45653 4.49875 4.55519 4.70558 4.98407 5.13446 5.26709 5.33234 5.40986 5.44828 5.57447 5.59020 5.59817 5.63880 5.71713 5.83957 5.91869 5.94865 5.99164 6.08094 6.21424 6.23391 6.30599 6.34191 6.41611 6.56629 6.69377 6.72422 6.94707 7.16537 7.22990 7.56773 7.63586 7.70376 7.82076 7.90801 8.30818 9.21778 9.83764 10.52979 11.39584 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.020922 B = 0.001745 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.985861 B =16038.068708 C =17001.692999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.122 4.122 16 C -0.128 4.128 17 C 0.117 3.883 18 N -0.719 5.719 19 C 0.556 3.444 20 O -0.534 6.534 21 C -0.098 4.098 22 C -0.090 4.090 23 C -0.052 4.052 24 C 0.027 3.973 25 N -0.251 5.251 26 N -0.007 5.007 27 N -0.411 5.411 28 H 0.455 0.545 29 C 0.017 3.983 30 C -0.035 4.035 31 H 0.252 0.748 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.400 0.600 45 H 0.143 0.857 46 H 0.147 0.853 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.066 -21.318 -9.751 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.046 3.954 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.167 4.167 17 C -0.006 4.006 18 N -0.370 5.370 19 C 0.342 3.658 20 O -0.411 6.411 21 C -0.105 4.105 22 C -0.111 4.111 23 C -0.074 4.074 24 C -0.098 4.098 25 N -0.127 5.127 26 N 0.011 4.989 27 N -0.140 5.140 28 H 0.303 0.697 29 C -0.103 4.103 30 C -0.058 4.058 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.236 0.764 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.749 -21.745 -10.660 26.917 hybrid contribution 0.085 1.814 -0.137 1.821 sum 11.834 -19.931 -10.797 25.571 Atomic orbital electron populations 1.69929 1.04958 1.25063 1.56612 1.24876 0.95666 0.97731 1.02061 0.86176 0.78686 0.83650 0.77602 1.21567 1.21742 1.20683 1.18961 0.90306 0.82346 1.43719 0.90776 1.44615 1.05332 1.00990 1.81146 1.21487 0.85009 0.90227 0.98636 1.23010 0.97412 0.99764 0.98727 1.22591 0.97120 0.97106 0.99398 1.20919 0.93818 0.86981 0.92828 0.95177 1.22033 1.00070 0.94233 0.99902 1.21850 0.99744 1.00346 0.94710 1.21590 0.96956 0.83709 0.98302 1.46012 1.54417 1.17729 1.18860 1.18019 0.78830 0.86640 0.82294 1.90816 1.60358 1.45553 1.44386 1.19818 1.00771 0.94947 0.94985 1.20925 0.99099 0.92142 0.98980 1.19954 0.95467 0.97590 0.94397 1.20124 1.02008 0.90824 0.96891 1.75413 1.12334 1.23116 1.01859 1.78006 1.14849 0.96723 1.09361 1.44909 1.40087 1.11233 1.17763 0.69745 1.19659 1.01861 0.97800 0.90950 1.20108 0.94646 0.93430 0.97595 0.93755 0.95942 0.91013 0.92574 0.92488 0.92050 0.92630 0.91666 0.92166 0.91579 0.91625 0.91046 0.91120 0.76422 0.83939 0.83494 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.54 55.49 0.59 -26.10 16 2 C -0.01 -0.19 5.47 -17.43 -0.10 -0.28 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -6.08 9.75 -15.06 -0.15 -6.22 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.60 -14.62 3.14 -162.31 -0.51 -15.13 16 10 C 0.17 4.07 5.46 -2.35 -0.01 4.05 16 11 C -0.15 -2.75 7.09 -24.58 -0.17 -2.92 16 12 C -0.12 -2.01 5.61 -24.89 -0.14 -2.15 16 13 C 0.16 3.09 3.18 -66.95 -0.21 2.88 16 14 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 15 C -0.12 -2.04 4.69 -26.73 -0.13 -2.16 16 16 C -0.13 -1.49 5.07 -26.73 -0.14 -1.63 16 17 C 0.12 1.36 5.67 -4.05 -0.02 1.33 16 18 N -0.72 -6.64 5.50 -61.29 -0.34 -6.98 16 19 C 0.56 6.02 7.77 -12.38 -0.10 5.93 16 20 O -0.53 -7.85 16.32 5.31 0.09 -7.76 16 21 C -0.10 -0.81 5.88 -104.92 -0.62 -1.43 16 22 C -0.09 -0.54 9.46 -39.57 -0.37 -0.91 16 23 C -0.05 -0.34 10.03 -39.70 -0.40 -0.74 16 24 C 0.03 0.24 7.36 -84.95 -0.63 -0.38 16 25 N -0.25 -2.62 12.42 32.09 0.40 -2.22 16 26 N -0.01 -0.07 13.28 60.35 0.80 0.74 16 27 N -0.41 -2.62 7.08 32.31 0.23 -2.39 16 28 H 0.46 1.07 8.96 -190.24 -1.71 -0.64 16 29 C 0.02 0.14 7.40 -84.23 -0.62 -0.49 16 30 C -0.04 -0.28 9.61 -39.10 -0.38 -0.65 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.02 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.07 1.91 6.83 -51.93 -0.35 1.56 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.95 7.79 -51.93 -0.40 0.54 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.21 7.89 -51.93 -0.41 0.80 16 39 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.07 0.68 7.57 -51.93 -0.39 0.29 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.40 2.44 6.47 -40.82 -0.26 2.18 16 45 H 0.14 0.45 6.36 -52.48 -0.33 0.12 16 46 H 0.15 0.65 8.06 -52.48 -0.42 0.22 16 47 H 0.15 1.08 7.63 -52.48 -0.40 0.68 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -34.50 385.52 -10.17 -44.66 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.03 Total: -1.72 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -4.17 Total: -5.78 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 1.17 Total: -52.08 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.09 Total: -7.76 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.50 -10.17 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663123822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.748 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds