Wall clock time and date at job start Wed Apr 1 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47201 * 269.99968 * 3 2 1 5 5 H 1.48499 * 109.47355 * 29.99751 * 3 2 1 6 6 H 1.48507 * 109.47142 * 149.99601 * 3 2 1 7 7 C 1.38814 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99889 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.47745 * 125.82046 * 346.80903 * 9 7 2 11 11 C 1.54916 * 104.84127 * 204.25140 * 10 9 7 12 12 C 1.55159 * 101.57802 * 322.90382 * 11 10 9 13 13 C 1.47015 * 125.65020 * 166.81190 * 9 7 2 14 14 H 1.09000 * 109.88607 * 59.31872 * 13 9 7 15 15 C 1.53005 * 109.88003 * 298.31224 * 13 9 7 16 16 C 1.53001 * 109.47181 * 176.68194 * 15 13 9 17 17 C 1.52995 * 109.47390 * 185.08183 * 16 15 13 18 18 N 1.46499 * 109.47489 * 179.97438 * 17 16 15 19 19 C 1.34773 * 120.00119 * 179.97438 * 18 17 16 20 20 O 1.21566 * 120.00065 * 0.02562 * 19 18 17 21 21 C 1.47730 * 119.99843 * 180.02562 * 19 18 17 22 22 C 1.40255 * 119.88049 * 0.02562 * 21 19 18 23 23 C 1.36160 * 120.55322 * 180.02562 * 22 21 19 24 24 C 1.39905 * 119.98057 * 359.97438 * 23 22 21 25 25 N 1.34754 * 134.59187 * 180.02562 * 24 23 22 26 26 N 1.28646 * 109.28942 * 179.97438 * 25 24 23 27 27 N 1.28810 * 111.79491 * 0.03212 * 26 25 24 28 28 H 0.96998 * 125.94531 * 179.97438 * 27 26 25 29 29 C 1.37368 * 108.11457 * 359.96666 * 27 26 25 30 30 C 1.38620 * 134.89113 * 179.97438 * 29 27 26 31 31 H 0.96994 * 120.00335 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.43550 * 85.36891 * 10 9 7 33 33 H 1.09006 * 110.28954 * 323.05199 * 10 9 7 34 34 H 1.08998 * 111.00297 * 204.83392 * 11 10 9 35 35 H 1.08999 * 111.03724 * 80.99213 * 11 10 9 36 36 H 1.08997 * 110.72147 * 277.13688 * 12 11 10 37 37 H 1.08997 * 110.71359 * 153.86463 * 12 11 10 38 38 H 1.08993 * 109.47407 * 56.67746 * 15 13 9 39 39 H 1.09003 * 109.47152 * 296.67999 * 15 13 9 40 40 H 1.09000 * 109.47356 * 65.07932 * 16 15 13 41 41 H 1.08998 * 109.47329 * 305.08346 * 16 15 13 42 42 H 1.09000 * 109.47076 * 59.99577 * 17 16 15 43 43 H 1.09001 * 109.47034 * 299.99591 * 17 16 15 44 44 H 0.97008 * 119.99911 * 0.02562 * 18 17 16 45 45 H 1.08003 * 119.72109 * 359.97438 * 22 21 19 46 46 H 1.08004 * 120.00863 * 179.69970 * 23 22 21 47 47 H 1.08004 * 120.24541 * 359.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1170 -2.5537 0.2734 11 6 -0.2628 -4.0160 0.7636 12 6 0.7706 -4.7492 -0.1320 13 6 1.9046 -3.7118 -0.2715 14 1 2.6940 -3.9263 0.4488 15 6 2.4723 -3.7494 -1.6918 16 6 3.1453 -5.1015 -1.9364 17 6 3.8223 -5.0935 -3.3084 18 7 4.4672 -6.3880 -3.5424 19 6 5.1295 -6.6124 -4.6944 20 8 5.1923 -5.7406 -5.5393 21 6 5.7793 -7.9180 -4.9305 22 6 5.7049 -8.9222 -3.9543 23 6 6.2992 -10.1304 -4.1574 24 6 6.9907 -10.3779 -5.3481 25 7 7.6679 -11.4305 -5.8475 26 7 8.1223 -11.1294 -7.0128 27 7 7.8029 -9.9294 -7.3552 28 1 8.0386 -9.4934 -8.1890 29 6 7.0702 -9.3746 -6.3342 30 6 6.4639 -8.1465 -6.1204 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6967 -2.3991 -0.6366 33 1 -0.4368 -1.8595 1.0505 34 1 -1.2707 -4.3898 0.5834 35 1 0.0016 -4.1037 1.8174 36 1 0.3399 -4.9832 -1.1055 37 1 1.1328 -5.6529 0.3580 38 1 3.2055 -2.9518 -1.8113 39 1 1.6642 -3.6106 -2.4100 40 1 2.3950 -5.8916 -1.9061 41 1 3.8927 -5.2805 -1.1635 42 1 4.5726 -4.3034 -3.3387 43 1 3.0749 -4.9146 -4.0813 44 1 4.4168 -7.0838 -2.8683 45 1 5.1724 -8.7354 -3.0334 46 1 6.2404 -10.8957 -3.3976 47 1 6.5222 -7.3728 -6.8717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663123822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:36 Heat of formation + Delta-G solvation = 66.058982 kcal Electronic energy + Delta-G solvation = -28247.840532 eV Core-core repulsion = 24238.773993 eV Total energy + Delta-G solvation = -4009.066539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -44.33306 -41.09988 -39.43926 -38.51198 -36.72365 -34.98095 -34.69241 -33.73765 -31.88104 -31.59854 -31.18457 -29.42908 -26.76705 -26.27270 -24.95654 -24.53829 -23.57149 -22.67779 -21.96261 -21.82644 -20.71896 -19.71909 -19.25889 -18.68497 -17.79671 -17.39482 -17.21449 -16.95463 -16.67692 -16.16749 -15.83921 -15.67088 -15.48953 -15.25853 -15.00649 -14.33520 -14.30022 -13.90116 -13.66676 -13.54529 -13.34238 -13.28806 -13.05129 -12.98039 -12.88875 -12.72082 -12.63549 -12.36817 -12.20010 -11.97924 -11.92106 -11.77887 -11.64365 -11.49954 -11.27686 -11.17964 -11.05413 -10.63753 -10.29365 -10.04358 -9.54781 -8.75164 -7.82471 -5.17355 -0.82427 0.07072 0.94886 1.42341 1.45598 1.46930 1.55009 1.78263 2.08895 2.51761 2.62892 2.88719 3.35800 3.47049 3.55936 3.74223 3.78192 3.93771 3.98347 4.00623 4.06523 4.19131 4.26430 4.31509 4.40238 4.48930 4.67590 4.76860 4.80280 4.86320 4.87581 4.91285 5.04112 5.08441 5.10041 5.12121 5.19167 5.28291 5.35002 5.41711 5.48368 5.53990 5.58159 5.71826 5.76367 5.79533 5.83455 6.30581 6.49787 7.08148 7.14483 7.15318 7.85788 8.53019 9.28850 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.020922 B = 0.001745 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.985861 B =16038.068708 C =17001.692999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.620 5.620 10 C 0.172 3.828 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.037 0.963 15 C -0.113 4.113 16 C -0.109 4.109 17 C 0.124 3.876 18 N -0.703 5.703 19 C 0.556 3.444 20 O -0.580 6.580 21 C -0.105 4.105 22 C -0.076 4.076 23 C -0.052 4.052 24 C 0.011 3.989 25 N -0.281 5.281 26 N -0.020 5.020 27 N -0.393 5.393 28 H 0.470 0.530 29 C 0.011 3.989 30 C -0.037 4.037 31 H 0.244 0.756 32 H -0.010 1.010 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.040 0.960 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.419 0.581 45 H 0.177 0.823 46 H 0.172 0.828 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.957 -24.065 -8.924 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.344 5.344 10 C 0.047 3.953 11 C -0.177 4.177 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.154 4.154 16 C -0.147 4.147 17 C 0.000 4.000 18 N -0.355 5.355 19 C 0.344 3.656 20 O -0.461 6.461 21 C -0.113 4.113 22 C -0.097 4.097 23 C -0.074 4.074 24 C -0.115 4.115 25 N -0.156 5.156 26 N -0.002 5.002 27 N -0.125 5.125 28 H 0.321 0.679 29 C -0.109 4.109 30 C -0.059 4.059 31 H 0.054 0.946 32 H 0.008 0.992 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.259 0.741 45 H 0.195 0.805 46 H 0.189 0.811 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.676 -24.560 -9.825 29.333 hybrid contribution -0.163 2.655 -0.417 2.692 sum 12.513 -21.905 -10.242 27.227 Atomic orbital electron populations 1.70145 1.06273 1.25013 1.58544 1.25645 0.96494 1.00906 1.03119 0.85204 0.77859 0.79796 0.77292 1.21688 1.22293 1.19320 1.19301 0.90710 0.83742 1.41834 0.90498 1.44935 1.05737 1.02344 1.81424 1.21289 0.84584 0.93357 0.96056 1.22881 0.99723 0.95700 0.99351 1.22593 0.94964 0.97309 0.99937 1.21238 0.95119 0.85251 0.93917 0.94566 1.21825 0.98989 0.96610 0.97928 1.21652 1.00465 0.97671 0.94953 1.21321 0.96231 0.84439 0.98012 1.45768 1.53460 1.17295 1.18972 1.18369 0.78349 0.86989 0.81890 1.90799 1.62119 1.47233 1.45963 1.19703 1.01306 0.94313 0.95936 1.21198 0.98284 0.90918 0.99311 1.20278 0.94680 0.98353 0.94089 1.20575 1.02257 0.90623 0.98008 1.75373 1.13552 1.24189 1.02520 1.77935 1.15234 0.97624 1.09383 1.44937 1.38940 1.10507 1.18088 0.67895 1.19673 1.02284 0.97693 0.91271 1.20144 0.94581 0.93417 0.97799 0.94623 0.99210 0.95095 0.90201 0.91851 0.90958 0.88262 0.94491 0.94093 0.88847 0.89679 0.92918 0.92550 0.74140 0.80540 0.81075 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.61 10.54 21.65 0.23 -57.38 16 2 C -0.07 -3.93 5.47 84.86 0.46 -3.46 16 3 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.23 -12.46 9.75 84.03 0.82 -11.64 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.62 -30.65 3.14 -667.43 -2.09 -32.74 16 10 C 0.17 8.36 5.46 86.80 0.47 8.83 16 11 C -0.14 -4.73 7.09 31.99 0.23 -4.51 16 12 C -0.11 -3.13 5.61 31.78 0.18 -2.96 16 13 C 0.15 5.46 3.18 45.34 0.14 5.60 16 14 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 15 C -0.11 -3.65 4.69 30.60 0.14 -3.50 16 16 C -0.11 -2.16 5.07 30.59 0.16 -2.01 16 17 C 0.12 2.64 5.67 86.38 0.49 3.13 16 18 N -0.70 -10.91 5.50 -466.10 -2.57 -13.48 16 19 C 0.56 11.11 7.77 86.75 0.67 11.78 16 20 O -0.58 -16.96 16.32 -3.92 -0.06 -17.03 16 21 C -0.11 -1.52 5.88 -20.06 -0.12 -1.63 16 22 C -0.08 -0.64 9.46 22.28 0.21 -0.43 16 23 C -0.05 -0.53 10.03 22.19 0.22 -0.31 16 24 C 0.01 0.19 7.36 39.75 0.29 0.48 16 25 N -0.28 -5.58 12.42 -52.39 -0.65 -6.23 16 26 N -0.02 -0.34 13.28 37.02 0.49 0.15 16 27 N -0.39 -4.65 7.08 -51.69 -0.37 -5.02 16 28 H 0.47 1.78 8.96 -219.82 -1.97 -0.19 16 29 C 0.01 0.16 7.40 39.02 0.29 0.45 16 30 C -0.04 -0.54 9.61 22.58 0.22 -0.32 16 31 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 32 H -0.01 -0.55 8.10 -2.39 -0.02 -0.56 16 33 H 0.03 1.72 6.83 -2.38 -0.02 1.70 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 1.93 7.79 -2.39 -0.02 1.91 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.04 1.37 7.89 -2.39 -0.02 1.35 16 39 H 0.04 1.45 8.07 -2.39 -0.02 1.44 16 40 H 0.09 1.42 7.57 -2.39 -0.02 1.41 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.42 3.13 6.47 -92.70 -0.60 2.53 16 45 H 0.18 0.17 6.36 -2.91 -0.02 0.15 16 46 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 47 H 0.15 2.11 7.63 -2.91 -0.02 2.09 16 Total: -1.00 -79.97 385.52 0.34 -79.63 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -1.55 Total: 4.39 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 4.88 Total: -0.48 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -4.96 Total: -114.70 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.06 Total: -17.03 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -79.97 0.34 -79.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663123822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.688 kcal (2) G-P(sol) polarization free energy of solvation -79.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds