Wall clock time and date at job start Wed Apr 1 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48494 * 109.47238 * 240.00267 * 3 2 1 5 5 H 1.48497 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46647 * 120.00233 * 3 2 1 7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2 11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7 12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9 13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2 14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7 15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7 16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9 17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13 18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15 19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16 20 20 O 1.21577 * 120.00060 * 0.02562 * 19 18 17 21 21 C 1.47716 * 120.00311 * 179.97438 * 19 18 17 22 22 C 1.40252 * 119.87710 * 359.73237 * 21 19 18 23 23 C 1.36165 * 120.55591 * 179.72617 * 22 21 19 24 24 C 1.39913 * 119.97799 * 0.52881 * 23 22 21 25 25 N 1.34749 * 134.59707 * 179.76854 * 24 23 22 26 26 N 1.28643 * 109.29422 * 179.97438 * 25 24 23 27 27 N 1.28810 * 111.79098 * 0.02562 * 26 25 24 28 28 H 0.97007 * 125.94406 * 180.02562 * 27 26 25 29 29 C 1.37361 * 108.11836 * 359.97438 * 27 26 25 30 30 C 1.38623 * 134.89239 * 180.02562 * 29 27 26 31 31 H 0.96998 * 120.00044 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36948 * 274.74374 * 10 9 7 33 33 H 1.09004 * 110.36922 * 37.07547 * 10 9 7 34 34 H 1.09007 * 111.00007 * 155.08208 * 11 10 9 35 35 H 1.08996 * 111.00809 * 278.89195 * 11 10 9 36 36 H 1.08999 * 110.72713 * 206.13107 * 12 11 10 37 37 H 1.09004 * 110.72288 * 82.85504 * 12 11 10 38 38 H 1.09004 * 109.46878 * 65.24230 * 15 13 9 39 39 H 1.09004 * 109.47464 * 305.24167 * 15 13 9 40 40 H 1.08998 * 109.47152 * 54.95716 * 16 15 13 41 41 H 1.09004 * 109.47229 * 294.94862 * 16 15 13 42 42 H 1.09004 * 109.46866 * 299.99913 * 17 16 15 43 43 H 1.08996 * 109.47153 * 60.00557 * 17 16 15 44 44 H 0.97004 * 119.99658 * 0.02562 * 18 17 16 45 45 H 1.07994 * 119.72389 * 359.97348 * 22 21 19 46 46 H 1.08001 * 120.01246 * 180.25302 * 23 22 21 47 47 H 1.08000 * 120.24144 * 359.96311 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1079 -2.5525 -0.3027 11 6 -0.2477 -4.0214 -0.7746 12 6 0.7643 -4.7442 0.1531 13 6 1.8982 -3.7080 0.3016 14 1 2.7026 -3.9324 -0.3988 15 6 2.4357 -3.7265 1.7339 16 6 3.1447 -5.0568 1.9955 17 6 3.7904 -5.0266 3.3823 18 7 4.4698 -6.3003 3.6326 19 6 5.1138 -6.5027 4.7990 20 8 5.1306 -5.6286 5.6438 21 6 5.7983 -7.7871 5.0515 22 6 5.7716 -8.7963 4.0779 23 6 6.4026 -9.9834 4.2940 24 6 7.0755 -10.2082 5.4999 25 7 7.7744 -11.2384 6.0156 26 7 8.1945 -10.9217 7.1895 27 7 7.8297 -9.7323 7.5233 28 1 8.0338 -9.2881 8.3611 29 6 7.1022 -9.2018 6.4859 30 6 6.4620 -7.9937 6.2572 31 1 -0.4850 0.8400 0.0004 32 1 -0.7062 -2.3831 0.5925 33 1 -0.4092 -1.8689 -1.0964 34 1 -1.2604 -4.3898 -0.6103 35 1 0.0383 -4.1244 -1.8213 36 1 1.1341 -5.6561 -0.3157 37 1 0.3125 -4.9628 1.1207 38 1 1.6081 -3.6120 2.4341 39 1 3.1411 -2.9063 1.8679 40 1 3.9144 -5.2131 1.2398 41 1 2.4200 -5.8699 1.9498 42 1 4.5150 -4.2136 3.4280 43 1 3.0208 -4.8704 4.1382 44 1 4.4566 -6.9976 2.9583 45 1 5.2496 -8.6290 3.1475 46 1 6.3799 -10.7529 3.5365 47 1 6.4784 -7.2185 7.0090 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663123823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:41 Heat of formation + Delta-G solvation = 65.805653 kcal Electronic energy + Delta-G solvation = -28250.185355 eV Core-core repulsion = 24241.107830 eV Total energy + Delta-G solvation = -4009.077525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -44.33395 -41.09962 -39.45002 -38.51202 -36.72631 -34.98151 -34.69090 -33.74500 -31.88182 -31.59854 -31.18089 -29.44159 -26.76713 -26.27050 -24.95656 -24.53887 -23.57085 -22.66218 -21.96191 -21.83194 -20.73510 -19.72130 -19.26078 -18.68307 -17.79636 -17.39545 -17.21337 -16.93979 -16.68059 -16.17229 -15.84326 -15.67258 -15.49411 -15.25992 -15.00605 -14.33102 -14.30013 -13.91127 -13.66452 -13.54344 -13.34320 -13.28946 -13.05107 -12.98418 -12.89014 -12.68519 -12.63296 -12.36884 -12.19629 -12.02126 -11.92177 -11.77730 -11.64582 -11.51240 -11.27933 -11.18764 -11.05158 -10.61795 -10.29441 -10.04435 -9.54798 -8.73926 -7.82887 -5.18121 -0.82514 0.07015 0.94845 1.42290 1.45596 1.48073 1.53963 1.78191 2.08847 2.51886 2.62825 2.88654 3.35532 3.46991 3.55954 3.74831 3.78185 3.93721 3.98169 4.00575 4.06751 4.19271 4.26449 4.31629 4.40009 4.49071 4.67833 4.76846 4.80253 4.86350 4.87460 4.91422 5.04221 5.08502 5.10198 5.12077 5.18995 5.28264 5.35023 5.41921 5.48326 5.53705 5.58211 5.71516 5.76556 5.79457 5.83417 6.30868 6.49736 7.08125 7.14421 7.15777 7.86261 8.53239 9.28489 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.001751 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.157219 B =15990.364166 C =16952.799264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.619 5.619 10 C 0.174 3.826 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.037 0.963 15 C -0.113 4.113 16 C -0.109 4.109 17 C 0.124 3.876 18 N -0.702 5.702 19 C 0.556 3.444 20 O -0.580 6.580 21 C -0.105 4.105 22 C -0.076 4.076 23 C -0.052 4.052 24 C 0.011 3.989 25 N -0.281 5.281 26 N -0.020 5.020 27 N -0.393 5.393 28 H 0.470 0.530 29 C 0.011 3.989 30 C -0.037 4.037 31 H 0.245 0.755 32 H -0.010 1.010 33 H 0.027 0.973 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.419 0.581 45 H 0.177 0.823 46 H 0.172 0.828 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.054 -23.741 9.269 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.344 5.344 10 C 0.049 3.951 11 C -0.177 4.177 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.055 0.945 15 C -0.154 4.154 16 C -0.147 4.147 17 C 0.000 4.000 18 N -0.355 5.355 19 C 0.344 3.656 20 O -0.461 6.461 21 C -0.113 4.113 22 C -0.097 4.097 23 C -0.074 4.074 24 C -0.115 4.115 25 N -0.156 5.156 26 N -0.002 5.002 27 N -0.125 5.125 28 H 0.321 0.679 29 C -0.109 4.109 30 C -0.059 4.059 31 H 0.054 0.946 32 H 0.008 0.992 33 H 0.046 0.954 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.259 0.741 45 H 0.195 0.805 46 H 0.189 0.811 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.763 -24.210 10.197 29.206 hybrid contribution -0.194 2.644 0.379 2.679 sum 12.569 -21.566 10.576 27.109 Atomic orbital electron populations 1.70145 1.06288 1.25131 1.58314 1.25670 0.96482 1.00945 1.02937 0.85283 0.77261 0.79444 0.78176 1.20260 1.22328 1.20573 1.19254 0.90695 0.83753 1.42152 0.90577 1.44856 1.06529 1.02650 1.80339 1.21200 0.84766 0.93191 0.95945 1.22883 0.99797 0.95697 0.99292 1.22591 0.95107 0.97383 0.99729 1.21243 0.95213 0.85295 0.93739 0.94492 1.21828 0.98945 0.96725 0.97864 1.21653 1.00458 0.97909 0.94705 1.21325 0.95830 0.84980 0.97866 1.45767 1.53222 1.18561 1.17936 1.18369 0.78473 0.86787 0.81975 1.90802 1.62474 1.46358 1.46497 1.19699 1.01247 0.94552 0.95757 1.21196 0.98084 0.90972 0.99459 1.20281 0.94666 0.98565 0.93882 1.20577 1.02084 0.90907 0.97891 1.75369 1.13947 1.24277 1.02041 1.77935 1.15071 0.97520 1.09646 1.44937 1.38582 1.11542 1.17409 0.67892 1.19673 1.02362 0.98020 0.90866 1.20145 0.94440 0.93689 0.97665 0.94600 0.99176 0.95420 0.90233 0.91822 0.88262 0.91010 0.94044 0.94539 0.89730 0.88815 0.92971 0.92512 0.74139 0.80545 0.81071 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.58 10.58 21.65 0.23 -57.35 16 2 C -0.07 -3.84 5.47 84.86 0.46 -3.38 16 3 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.23 -12.61 9.71 84.03 0.82 -11.80 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.62 -30.63 3.13 -668.29 -2.09 -32.72 16 10 C 0.17 8.47 5.41 86.86 0.47 8.94 16 11 C -0.14 -4.75 7.08 31.98 0.23 -4.52 16 12 C -0.11 -3.15 5.71 31.78 0.18 -2.97 16 13 C 0.15 5.48 3.16 45.34 0.14 5.62 16 14 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 15 C -0.11 -3.66 4.71 30.59 0.14 -3.52 16 16 C -0.11 -2.17 5.10 30.60 0.16 -2.02 16 17 C 0.12 2.66 5.68 86.38 0.49 3.15 16 18 N -0.70 -10.98 5.50 -466.07 -2.57 -13.55 16 19 C 0.56 11.16 7.77 86.75 0.67 11.83 16 20 O -0.58 -17.03 16.32 -3.96 -0.06 -17.09 16 21 C -0.11 -1.52 5.88 -20.06 -0.12 -1.64 16 22 C -0.08 -0.64 9.46 22.28 0.21 -0.43 16 23 C -0.05 -0.53 10.03 22.19 0.22 -0.31 16 24 C 0.01 0.19 7.36 39.76 0.29 0.48 16 25 N -0.28 -5.59 12.42 -52.38 -0.65 -6.24 16 26 N -0.02 -0.34 13.28 37.02 0.49 0.15 16 27 N -0.39 -4.66 7.08 -51.69 -0.37 -5.03 16 28 H 0.47 1.80 8.96 -219.81 -1.97 -0.17 16 29 C 0.01 0.17 7.40 39.02 0.29 0.45 16 30 C -0.04 -0.54 9.61 22.58 0.22 -0.32 16 31 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 32 H -0.01 -0.53 8.06 -2.39 -0.02 -0.55 16 33 H 0.03 1.53 6.93 -2.38 -0.02 1.52 16 34 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 1.93 7.76 -2.39 -0.02 1.91 16 38 H 0.04 1.47 8.02 -2.39 -0.02 1.45 16 39 H 0.04 1.37 7.84 -2.38 -0.02 1.35 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.43 7.65 -2.39 -0.02 1.41 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.42 3.17 6.47 -92.71 -0.60 2.57 16 45 H 0.18 0.18 6.36 -2.91 -0.02 0.16 16 46 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 47 H 0.15 2.12 7.63 -2.91 -0.02 2.09 16 Total: -1.00 -79.93 385.59 0.34 -79.59 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -1.55 Total: 4.53 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 4.88 Total: -0.43 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -4.95 Total: -114.74 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.06 Total: -17.09 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -79.93 0.34 -79.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663123823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.396 kcal (2) G-P(sol) polarization free energy of solvation -79.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds