Wall clock time and date at job start Wed Apr 1 2020 03:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99897 * 2 1 4 4 H 1.48504 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47214 * 299.99737 * 3 2 1 6 6 H 1.48502 * 109.47618 * 59.99734 * 3 2 1 7 7 C 1.38813 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99475 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99669 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46801 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47104 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.49210 * 54.94300 * 12 11 10 14 14 C 1.53045 * 109.49612 * 175.00172 * 12 11 10 15 15 C 1.53046 * 109.53558 * 181.35203 * 14 12 11 16 16 C 1.53194 * 109.31008 * 298.63443 * 15 14 12 17 17 N 1.46923 * 108.77505 * 54.63757 * 16 15 14 18 18 C 1.34780 * 120.62847 * 126.36649 * 17 16 15 19 19 O 1.21446 * 119.99632 * 176.25299 * 18 17 16 20 20 C 1.48629 * 120.00149 * 356.25684 * 18 17 16 21 21 N 1.33512 * 120.60177 * 38.93459 * 20 18 17 22 22 C 1.30812 * 122.65415 * 179.97438 * 21 20 18 23 23 N 1.34053 * 123.37786 * 0.02562 * 22 21 20 24 24 H 0.97003 * 120.21054 * 179.97438 * 23 22 21 25 25 C 1.36864 * 119.57487 * 359.97438 * 23 22 21 26 26 N 1.31635 * 135.95616 * 180.02562 * 25 23 22 27 27 C 1.33525 * 110.83113 * 179.30809 * 26 25 23 28 28 C 1.36074 * 110.92909 * 0.63757 * 27 26 25 29 29 C 1.39540 * 120.60407 * 218.65492 * 20 18 17 30 30 C 1.46929 * 118.74118 * 306.63820 * 17 16 15 31 31 H 0.96997 * 119.99953 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00005 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.47611 * 60.00412 * 10 9 7 34 34 H 1.08993 * 109.47194 * 299.99442 * 10 9 7 35 35 H 1.09004 * 109.47037 * 60.00071 * 11 10 9 36 36 H 1.08993 * 109.47698 * 300.00042 * 11 10 9 37 37 H 1.08996 * 109.45896 * 61.33248 * 14 12 11 38 38 H 1.08996 * 109.44564 * 301.36313 * 14 12 11 39 39 H 1.09001 * 109.49172 * 178.68208 * 15 14 12 40 40 H 1.08997 * 109.49749 * 58.58419 * 15 14 12 41 41 H 1.09000 * 109.58687 * 294.84804 * 16 15 14 42 42 H 1.09003 * 109.58082 * 174.42328 * 16 15 14 43 43 H 1.08001 * 118.31054 * 179.97438 * 22 21 20 44 44 H 1.08006 * 124.53375 * 180.13090 * 27 26 25 45 45 H 1.07995 * 126.72267 * 179.47603 * 28 27 26 46 46 H 1.08996 * 109.58531 * 173.14573 * 30 17 16 47 47 H 1.08998 * 109.58347 * 293.57448 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0638 -4.8197 0.0021 12 6 1.8288 -6.1447 0.0026 13 1 2.5218 -6.1643 0.8438 14 6 0.8396 -7.3056 0.1287 15 6 1.6061 -8.6298 0.1632 16 6 2.3853 -8.7984 -1.1449 17 7 3.2331 -7.6154 -1.3462 18 6 4.5569 -7.7480 -1.5619 19 8 5.2354 -6.7680 -1.7944 20 6 5.1863 -9.0937 -1.5154 21 7 4.5555 -10.1569 -2.0195 22 6 5.0719 -11.3586 -2.0004 23 7 6.2742 -11.6365 -1.4767 24 1 6.6128 -12.5454 -1.4868 25 6 7.0209 -10.6294 -0.9277 26 7 8.1978 -10.5334 -0.3457 27 6 8.4546 -9.2696 0.0004 28 6 7.4194 -8.4533 -0.3368 29 6 6.4498 -9.2677 -0.9492 30 6 2.6115 -6.2849 -1.3018 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6840 -3.7142 0.8921 34 1 2.6853 -3.7149 -0.8878 35 1 0.4375 -4.7625 -0.8882 36 1 0.4368 -4.7614 0.8917 37 1 0.1625 -7.3001 -0.7255 38 1 0.2650 -7.1945 1.0483 39 1 0.9025 -9.4545 0.2766 40 1 2.3013 -8.6260 1.0028 41 1 1.6870 -8.8933 -1.9765 42 1 3.0098 -9.6898 -1.0859 43 1 4.4998 -12.1688 -2.4279 44 1 9.3591 -8.9407 0.4904 45 1 7.3549 -7.3887 -0.1675 46 1 3.3852 -5.5184 -1.3463 47 1 1.9320 -6.1707 -2.1464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715141663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:30 Heat of formation + Delta-G solvation = 80.364084 kcal Electronic energy + Delta-G solvation = -29533.317976 eV Core-core repulsion = 25524.871752 eV Total energy + Delta-G solvation = -4008.446224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.36725 -40.30893 -39.07254 -37.93678 -35.72264 -35.18211 -33.42343 -32.19313 -30.96344 -30.62686 -29.47514 -27.65392 -26.60524 -24.87146 -24.11890 -23.89701 -22.55886 -21.70538 -20.95395 -20.45050 -19.62721 -18.90810 -18.24171 -17.27724 -16.96766 -16.76631 -16.35438 -16.01628 -15.40131 -15.00716 -14.74996 -14.64144 -14.37145 -13.79323 -13.60712 -13.50427 -13.42721 -13.30856 -13.11759 -12.97854 -12.78105 -12.63962 -12.31963 -11.93129 -11.37137 -11.25793 -11.13501 -11.05255 -10.84228 -10.80427 -10.60781 -10.42780 -10.22955 -10.18457 -9.89376 -9.81451 -9.59712 -9.02692 -8.80352 -8.76338 -8.26908 -6.84716 -5.70424 -2.98434 -0.64851 0.91627 1.71061 2.24687 2.55167 3.01082 3.02794 3.39799 3.48557 3.54399 3.56988 3.60711 4.03354 4.25802 4.44833 4.58023 4.69938 4.76368 4.81239 4.87424 4.96960 5.10281 5.18296 5.38433 5.47031 5.58834 5.61371 5.63254 5.67995 5.71673 5.79324 5.87658 5.91522 5.96531 5.99755 6.06168 6.16874 6.22610 6.26175 6.34998 6.46386 6.50300 6.61097 6.92917 6.93971 6.96561 7.16175 7.54055 7.78253 7.85092 8.49111 9.60070 10.18661 10.53299 11.52807 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.002357 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.034034 B =11874.564372 C =13231.239595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.118 4.118 12 C -0.096 4.096 13 H 0.074 0.926 14 C -0.116 4.116 15 C -0.137 4.137 16 C 0.097 3.903 17 N -0.589 5.589 18 C 0.567 3.433 19 O -0.508 6.508 20 C 0.205 3.795 21 N -0.512 5.512 22 C 0.347 3.653 23 N -0.519 5.519 24 H 0.429 0.571 25 C 0.254 3.746 26 N -0.516 5.516 27 C 0.065 3.935 28 C -0.197 4.197 29 C -0.156 4.156 30 C 0.113 3.887 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.017 0.983 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.222 0.778 44 H 0.169 0.831 45 H 0.151 0.849 46 H 0.101 0.899 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.047 -32.711 -3.256 33.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.156 4.156 12 C -0.116 4.116 13 H 0.092 0.908 14 C -0.153 4.153 15 C -0.175 4.175 16 C -0.026 4.026 17 N -0.321 5.321 18 C 0.351 3.649 19 O -0.382 6.382 20 C 0.071 3.929 21 N -0.234 5.234 22 C 0.064 3.936 23 N -0.123 5.123 24 H 0.268 0.732 25 C 0.000 4.000 26 N -0.236 5.236 27 C -0.077 4.077 28 C -0.221 4.221 29 C -0.168 4.168 30 C -0.008 4.008 31 H 0.063 0.937 32 H 0.216 0.784 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.238 0.762 44 H 0.187 0.813 45 H 0.168 0.832 46 H 0.120 0.880 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.519 -32.546 -3.502 33.586 hybrid contribution 0.415 1.020 0.216 1.123 sum 7.934 -31.526 -3.286 32.674 Atomic orbital electron populations 1.69675 1.05095 1.25427 1.58280 1.24741 0.95548 0.97692 1.03269 0.86113 0.78881 0.84115 0.77130 1.20499 1.21895 1.21915 1.19311 0.91123 0.84211 1.41993 0.91119 1.42379 1.05852 1.00128 1.89457 1.20718 0.93569 0.85579 0.97883 1.21729 0.98643 0.92798 1.02454 1.21394 0.97265 0.95316 0.97612 0.90792 1.21606 0.97705 0.93455 1.02569 1.21979 0.99418 0.98477 0.97669 1.22209 0.94445 0.88403 0.97537 1.48024 1.06266 1.08720 1.69052 1.17845 0.82168 0.86564 0.78334 1.90856 1.62032 1.37645 1.47677 1.21223 0.89899 0.92546 0.89254 1.68047 1.33782 0.97577 1.23983 1.24892 0.82048 0.96536 0.90109 1.41786 1.15030 1.11977 1.43468 0.73244 1.20510 0.93538 0.86005 0.99926 1.69547 1.12478 1.23005 1.18579 1.22684 0.98983 0.87367 0.98681 1.21563 0.94335 1.00618 1.05579 1.20835 0.95543 0.94754 1.05692 1.21858 0.97991 0.83017 0.97924 0.93657 0.78364 0.96506 0.96127 0.91687 0.91453 0.91523 0.91412 0.90751 0.91845 0.90808 0.87711 0.76195 0.81341 0.83154 0.88048 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.02 13.06 55.49 0.72 -28.30 16 2 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 23.17 29.55 -169.99 -5.02 18.14 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.73 -19.35 5.60 -59.92 -0.34 -19.68 16 10 C 0.15 3.13 6.02 -4.04 -0.02 3.11 16 11 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 12 C -0.10 -1.24 2.32 -90.72 -0.21 -1.45 16 13 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.12 -1.16 5.17 -26.68 -0.14 -1.30 16 15 C -0.14 -1.13 6.08 -26.61 -0.16 -1.30 16 16 C 0.10 0.84 6.06 -3.71 -0.02 0.81 16 17 N -0.59 -7.12 2.98 -173.85 -0.52 -7.64 16 18 C 0.57 7.92 7.50 -11.97 -0.09 7.83 16 19 O -0.51 -8.97 16.09 5.41 0.09 -8.88 16 20 C 0.20 2.33 6.10 -82.36 -0.50 1.83 16 21 N -0.51 -3.79 7.26 -10.67 -0.08 -3.87 16 22 C 0.35 1.03 12.24 -91.01 -1.11 -0.08 16 23 N -0.52 -2.18 5.32 -12.02 -0.06 -2.25 16 24 H 0.43 0.17 8.93 -40.82 -0.36 -0.20 16 25 C 0.25 2.54 8.71 -154.20 -1.34 1.19 16 26 N -0.52 -6.11 11.16 -10.91 -0.12 -6.23 16 27 C 0.06 0.75 11.70 -17.59 -0.21 0.55 16 28 C -0.20 -2.54 10.62 -39.45 -0.42 -2.96 16 29 C -0.16 -1.91 6.16 -104.64 -0.64 -2.55 16 30 C 0.11 1.53 5.29 -3.93 -0.02 1.51 16 31 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.44 6.70 -51.93 -0.35 0.10 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.11 0.80 4.53 -51.93 -0.24 0.56 16 43 H 0.22 -0.67 8.06 -52.49 -0.42 -1.09 16 44 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 46 H 0.10 1.64 5.74 -51.93 -0.30 1.34 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -39.11 381.91 -11.45 -50.56 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.60 Total: 4.81 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -5.27 Total: -2.43 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -0.39 Total: -67.96 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.11 -11.45 -50.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715141663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.924 kcal (2) G-P(sol) polarization free energy of solvation -39.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds