Wall clock time and date at job start Wed Apr 1 2020 03:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99897 * 2 1 4 4 H 1.48504 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47214 * 299.99737 * 3 2 1 6 6 H 1.48502 * 109.47618 * 59.99734 * 3 2 1 7 7 C 1.38813 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99475 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99669 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46801 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47104 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.49210 * 54.94300 * 12 11 10 14 14 C 1.53045 * 109.49612 * 175.00172 * 12 11 10 15 15 C 1.53046 * 109.53558 * 181.35203 * 14 12 11 16 16 C 1.53194 * 109.31008 * 298.63443 * 15 14 12 17 17 N 1.46923 * 108.77505 * 54.63757 * 16 15 14 18 18 C 1.34780 * 120.62847 * 126.36649 * 17 16 15 19 19 O 1.21446 * 119.99632 * 176.25299 * 18 17 16 20 20 C 1.48629 * 120.00149 * 356.25684 * 18 17 16 21 21 N 1.33512 * 120.60177 * 38.93459 * 20 18 17 22 22 C 1.30812 * 122.65415 * 179.97438 * 21 20 18 23 23 N 1.34053 * 123.37786 * 0.02562 * 22 21 20 24 24 H 0.97003 * 120.21054 * 179.97438 * 23 22 21 25 25 C 1.36864 * 119.57487 * 359.97438 * 23 22 21 26 26 N 1.31635 * 135.95616 * 180.02562 * 25 23 22 27 27 C 1.33525 * 110.83113 * 179.30809 * 26 25 23 28 28 C 1.36074 * 110.92909 * 0.63757 * 27 26 25 29 29 C 1.39540 * 120.60407 * 218.65492 * 20 18 17 30 30 C 1.46929 * 118.74118 * 306.63820 * 17 16 15 31 31 H 0.96997 * 119.99953 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00005 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.47611 * 60.00412 * 10 9 7 34 34 H 1.08993 * 109.47194 * 299.99442 * 10 9 7 35 35 H 1.09004 * 109.47037 * 60.00071 * 11 10 9 36 36 H 1.08993 * 109.47698 * 300.00042 * 11 10 9 37 37 H 1.08996 * 109.45896 * 61.33248 * 14 12 11 38 38 H 1.08996 * 109.44564 * 301.36313 * 14 12 11 39 39 H 1.09001 * 109.49172 * 178.68208 * 15 14 12 40 40 H 1.08997 * 109.49749 * 58.58419 * 15 14 12 41 41 H 1.09000 * 109.58687 * 294.84804 * 16 15 14 42 42 H 1.09003 * 109.58082 * 174.42328 * 16 15 14 43 43 H 1.08001 * 118.31054 * 179.97438 * 22 21 20 44 44 H 1.08006 * 124.53375 * 180.13090 * 27 26 25 45 45 H 1.07995 * 126.72267 * 179.47603 * 28 27 26 46 46 H 1.08996 * 109.58531 * 173.14573 * 30 17 16 47 47 H 1.08998 * 109.58347 * 293.57448 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0638 -4.8197 0.0021 12 6 1.8288 -6.1447 0.0026 13 1 2.5218 -6.1643 0.8438 14 6 0.8396 -7.3056 0.1287 15 6 1.6061 -8.6298 0.1632 16 6 2.3853 -8.7984 -1.1449 17 7 3.2331 -7.6154 -1.3462 18 6 4.5569 -7.7480 -1.5619 19 8 5.2354 -6.7680 -1.7944 20 6 5.1863 -9.0937 -1.5154 21 7 4.5555 -10.1569 -2.0195 22 6 5.0719 -11.3586 -2.0004 23 7 6.2742 -11.6365 -1.4767 24 1 6.6128 -12.5454 -1.4868 25 6 7.0209 -10.6294 -0.9277 26 7 8.1978 -10.5334 -0.3457 27 6 8.4546 -9.2696 0.0004 28 6 7.4194 -8.4533 -0.3368 29 6 6.4498 -9.2677 -0.9492 30 6 2.6115 -6.2849 -1.3018 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6840 -3.7142 0.8921 34 1 2.6853 -3.7149 -0.8878 35 1 0.4375 -4.7625 -0.8882 36 1 0.4368 -4.7614 0.8917 37 1 0.1625 -7.3001 -0.7255 38 1 0.2650 -7.1945 1.0483 39 1 0.9025 -9.4545 0.2766 40 1 2.3013 -8.6260 1.0028 41 1 1.6870 -8.8933 -1.9765 42 1 3.0098 -9.6898 -1.0859 43 1 4.4998 -12.1688 -2.4279 44 1 9.3591 -8.9407 0.4904 45 1 7.3549 -7.3887 -0.1675 46 1 3.3852 -5.5184 -1.3463 47 1 1.9320 -6.1707 -2.1464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715141663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:29 Heat of formation + Delta-G solvation = 53.753709 kcal Electronic energy + Delta-G solvation = -29534.471888 eV Core-core repulsion = 25524.871752 eV Total energy + Delta-G solvation = -4009.600136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.05073 -41.29181 -39.73865 -39.03322 -37.01914 -36.25234 -34.90641 -33.42182 -32.33308 -31.66241 -30.26249 -29.14397 -27.57112 -25.94420 -25.56471 -24.52406 -24.00749 -22.56505 -22.18305 -21.50803 -20.51882 -19.57080 -19.20498 -18.96847 -17.94671 -17.66570 -17.21639 -16.85509 -16.64406 -16.36949 -15.95872 -15.52798 -15.38686 -15.31734 -15.12202 -14.79965 -14.34068 -14.31291 -14.19057 -14.02000 -13.93145 -13.52738 -13.42608 -13.01008 -12.91549 -12.73497 -12.54182 -12.28019 -12.10968 -12.04908 -11.91574 -11.80941 -11.74340 -11.62510 -11.22873 -11.02755 -10.94836 -10.68814 -9.82317 -9.69149 -9.08277 -9.03571 -7.99023 -5.28111 -1.36102 0.34079 1.21238 1.31568 1.44434 1.45457 1.56209 1.61271 2.17002 2.31994 2.53138 2.73160 2.93488 3.33971 3.43158 3.56570 3.66353 3.81784 3.88452 4.02482 4.09526 4.11594 4.24334 4.32194 4.35531 4.40616 4.50786 4.60703 4.67945 4.72355 4.77257 4.86411 4.89301 4.95395 5.05121 5.06639 5.12464 5.23725 5.31681 5.34589 5.37433 5.44370 5.46810 5.51031 5.59757 5.87351 6.17002 6.24437 6.39922 6.76718 6.84014 7.30212 8.05146 8.30429 9.24622 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.002357 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.034034 B =11874.564372 C =13231.239595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.250 4.250 8 H 0.068 0.932 9 N -0.746 5.746 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.085 4.085 13 H 0.059 0.941 14 C -0.111 4.111 15 C -0.130 4.130 16 C 0.092 3.908 17 N -0.583 5.583 18 C 0.555 3.445 19 O -0.563 6.563 20 C 0.212 3.788 21 N -0.525 5.525 22 C 0.384 3.616 23 N -0.499 5.499 24 H 0.452 0.548 25 C 0.260 3.740 26 N -0.536 5.536 27 C 0.056 3.944 28 C -0.232 4.232 29 C -0.197 4.197 30 C 0.115 3.885 31 H 0.253 0.747 32 H 0.376 0.624 33 H 0.008 0.992 34 H 0.014 0.986 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.297 0.703 44 H 0.184 0.816 45 H 0.127 0.873 46 H 0.064 0.936 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.700 -36.861 -4.099 37.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.389 5.389 10 C 0.023 3.977 11 C -0.141 4.141 12 C -0.105 4.105 13 H 0.078 0.922 14 C -0.149 4.149 15 C -0.168 4.168 16 C -0.029 4.029 17 N -0.314 5.314 18 C 0.341 3.659 19 O -0.441 6.441 20 C 0.076 3.924 21 N -0.246 5.246 22 C 0.103 3.897 23 N -0.104 5.104 24 H 0.296 0.704 25 C 0.005 3.995 26 N -0.257 5.257 27 C -0.086 4.086 28 C -0.256 4.256 29 C -0.209 4.209 30 C -0.007 4.007 31 H 0.062 0.938 32 H 0.208 0.792 33 H 0.026 0.974 34 H 0.032 0.968 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.139 0.861 43 H 0.312 0.688 44 H 0.201 0.799 45 H 0.145 0.855 46 H 0.082 0.918 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.171 -36.808 -4.342 37.574 hybrid contribution 0.739 2.171 0.395 2.327 sum 6.910 -34.638 -3.948 35.540 Atomic orbital electron populations 1.69813 1.06450 1.26158 1.59340 1.25576 0.96527 1.01058 1.03455 0.85069 0.78007 0.79662 0.77011 1.19564 1.21560 1.21497 1.19640 0.91310 0.85659 1.41554 0.91395 1.42572 1.05696 1.01199 1.89391 1.20855 0.94432 0.85550 0.96897 1.21586 0.97558 0.92263 1.02731 1.21267 0.97438 0.95161 0.96641 0.92230 1.21591 0.97062 0.92770 1.03477 1.21965 0.99541 0.98419 0.96898 1.22547 0.94507 0.87298 0.98520 1.48145 1.06154 1.09216 1.67872 1.18404 0.82490 0.87392 0.77626 1.90818 1.63318 1.39750 1.50180 1.20861 0.89519 0.92456 0.89574 1.68041 1.34098 0.98035 1.24415 1.26440 0.80895 0.96411 0.85953 1.41945 1.14643 1.12003 1.41827 0.70375 1.20591 0.92978 0.86559 0.99364 1.69533 1.13551 1.22684 1.19950 1.22904 0.99282 0.87500 0.98928 1.21502 0.96159 0.99982 1.08006 1.20952 0.96219 0.96138 1.07590 1.21678 0.97045 0.83371 0.98632 0.93792 0.79183 0.97419 0.96807 0.91189 0.91231 0.90237 0.90786 0.87279 0.92957 0.88862 0.86110 0.68826 0.79875 0.85503 0.91794 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 2 C -0.07 -4.44 5.50 84.86 0.47 -3.98 16 3 Si 0.97 48.33 29.55 68.60 2.03 50.36 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.75 -40.56 5.60 -343.48 -1.92 -42.49 16 10 C 0.15 6.51 6.02 86.38 0.52 7.03 16 11 C -0.10 -3.33 4.80 30.60 0.15 -3.18 16 12 C -0.09 -2.20 2.32 -10.86 -0.03 -2.23 16 13 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 14 C -0.11 -1.96 5.17 30.62 0.16 -1.80 16 15 C -0.13 -1.72 6.08 30.67 0.19 -1.54 16 16 C 0.09 1.32 6.06 86.36 0.52 1.84 16 17 N -0.58 -14.02 2.98 -822.26 -2.45 -16.47 16 18 C 0.55 16.25 7.50 87.02 0.65 16.90 16 19 O -0.56 -21.88 16.09 -3.55 -0.06 -21.93 16 20 C 0.21 4.72 6.10 41.98 0.26 4.97 16 21 N -0.52 -5.87 7.26 -187.68 -1.36 -7.23 16 22 C 0.38 0.08 12.24 180.48 2.21 2.29 16 23 N -0.50 -2.05 5.32 -191.95 -1.02 -3.07 16 24 H 0.45 -2.02 8.93 -92.71 -0.83 -2.85 16 25 C 0.26 4.84 8.71 136.29 1.19 6.02 16 26 N -0.54 -12.67 11.16 -188.44 -2.10 -14.77 16 27 C 0.06 1.40 11.70 83.93 0.98 2.38 16 28 C -0.23 -6.69 10.62 22.36 0.24 -6.45 16 29 C -0.20 -4.96 6.16 -19.88 -0.12 -5.08 16 30 C 0.11 3.20 5.29 86.22 0.46 3.66 16 31 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.38 21.14 7.67 -92.71 -0.71 20.43 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.01 0.63 6.70 -2.39 -0.02 0.62 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 1.37 4.53 -2.39 -0.01 1.36 16 43 H 0.30 -4.47 8.06 -2.91 -0.02 -4.49 16 44 H 0.18 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 46 H 0.06 2.27 5.74 -2.39 -0.01 2.26 16 47 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -93.00 381.91 1.55 -91.45 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.52 Total: 18.05 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 8.67 Total: 6.72 kcal Atomic # 7 Polarization: -136.06 SS G_CDS: -8.58 Total: -144.64 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.93 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -93.00 1.55 -91.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715141663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.203 kcal (2) G-P(sol) polarization free energy of solvation -93.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds