Wall clock time and date at job start Wed Apr 1 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99994 * 2 1 4 4 H 1.48502 * 109.47072 * 269.99590 * 3 2 1 5 5 H 1.48500 * 109.47434 * 29.99782 * 3 2 1 6 6 H 1.48500 * 109.47390 * 149.99607 * 3 2 1 7 7 C 1.38811 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00326 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99540 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99469 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46895 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47330 * 179.97438 * 11 10 9 13 13 C 1.53038 * 109.45997 * 175.00146 * 12 11 10 14 14 C 1.53196 * 109.31070 * 181.38775 * 13 12 11 15 15 N 1.46929 * 108.89389 * 305.29236 * 14 13 12 16 16 C 1.34775 * 120.63044 * 233.68398 * 15 14 13 17 17 O 1.21579 * 119.99741 * 356.19028 * 16 15 14 18 18 C 1.47679 * 119.99845 * 176.19179 * 16 15 14 19 19 C 1.40188 * 120.41027 * 50.10770 * 18 16 15 20 20 N 1.31196 * 121.37222 * 179.97438 * 19 18 16 21 21 C 1.32922 * 121.84519 * 359.97438 * 20 19 18 22 22 N 1.36631 * 133.26857 * 180.02562 * 21 20 19 23 23 H 0.97002 * 125.34292 * 0.02562 * 22 21 20 24 24 N 1.39801 * 109.32262 * 179.97438 * 22 21 20 25 25 C 1.30204 * 110.12796 * 0.02562 * 24 22 21 26 26 C 1.41069 * 120.20572 * 0.02562 * 21 20 19 27 27 C 1.39510 * 120.40770 * 229.82739 * 18 16 15 28 28 C 1.47203 * 118.55360 * 53.54011 * 15 14 13 29 29 C 1.53035 * 109.46176 * 295.07094 * 12 11 10 30 30 H 0.96998 * 120.00269 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00536 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47653 * 60.00587 * 10 9 7 33 33 H 1.09005 * 109.47345 * 299.99535 * 10 9 7 34 34 H 1.09001 * 109.46627 * 59.99791 * 11 10 9 35 35 H 1.08999 * 109.47209 * 300.00452 * 11 10 9 36 36 H 1.08996 * 109.45774 * 55.02608 * 12 11 10 37 37 H 1.08999 * 109.49949 * 61.43460 * 13 12 11 38 38 H 1.09001 * 109.52344 * 301.35015 * 13 12 11 39 39 H 1.09004 * 109.58719 * 65.15067 * 14 13 12 40 40 H 1.09000 * 109.58498 * 185.43435 * 14 13 12 41 41 H 1.07996 * 119.31459 * 359.97382 * 19 18 16 42 42 H 1.08005 * 126.20255 * 179.97438 * 25 24 22 43 43 H 1.07993 * 121.02806 * 359.97438 * 27 18 16 44 44 H 1.09004 * 109.53222 * 186.67673 * 28 15 14 45 45 H 1.09005 * 109.67798 * 66.36981 * 28 15 14 46 46 H 1.09006 * 109.49940 * 298.56363 * 29 12 11 47 47 H 1.09001 * 109.50169 * 58.65887 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0008 12 6 1.8288 -6.1447 0.0013 13 6 0.8388 -7.3050 0.1262 14 6 1.6105 -8.6279 0.1612 15 7 2.4787 -8.7038 -1.0217 16 6 2.4234 -9.7680 -1.8469 17 8 1.7005 -10.7081 -1.5789 18 6 3.2408 -9.7920 -3.0766 19 6 4.6116 -9.5034 -3.0232 20 7 5.3556 -9.5198 -4.1037 21 6 4.8506 -9.8098 -5.2986 22 7 5.3938 -9.8943 -6.5494 23 1 6.3259 -9.7383 -6.7681 24 7 4.3958 -10.2419 -7.4647 25 6 3.2548 -10.3792 -6.8527 26 6 3.4794 -10.1114 -5.4354 27 6 2.6594 -10.1077 -4.3049 28 6 3.4062 -7.5918 -1.2862 29 6 2.6144 -6.2805 -1.3050 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.6840 -3.7141 0.8922 33 1 2.6854 -3.7149 -0.8879 34 1 0.4382 -4.7621 -0.8900 35 1 0.4361 -4.7618 0.8900 36 1 2.5199 -6.1647 0.8440 37 1 0.1632 -7.3005 -0.7292 38 1 0.2630 -7.1953 1.0451 39 1 2.2190 -8.6722 1.0645 40 1 0.9078 -9.4612 0.1528 41 1 5.0646 -9.2627 -2.0729 42 1 2.3130 -10.6432 -7.3107 43 1 1.6073 -10.3396 -4.3796 44 1 3.8884 -7.7414 -2.2523 45 1 4.1628 -7.5506 -0.5026 46 1 1.9221 -6.2856 -2.1470 47 1 3.3028 -5.4413 -1.4046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715171663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:06 Heat of formation + Delta-G solvation = 73.146248 kcal Electronic energy + Delta-G solvation = -29010.682333 eV Core-core repulsion = 25001.923121 eV Total energy + Delta-G solvation = -4008.759213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.12910 -40.55408 -38.49646 -37.82352 -35.37036 -33.78633 -33.56471 -31.86129 -31.19596 -31.01609 -30.35579 -28.43129 -25.55450 -24.75151 -24.07112 -23.38880 -22.83341 -22.31927 -21.23897 -20.40355 -19.49838 -18.88365 -18.17874 -17.03683 -16.83241 -16.62134 -15.98969 -15.80187 -15.34678 -14.86464 -14.71831 -14.66917 -14.34372 -14.15360 -13.83145 -13.73812 -13.66917 -13.41323 -13.24819 -12.98054 -12.82867 -12.70300 -12.24149 -11.72916 -11.40746 -11.30177 -11.26963 -11.17540 -11.02146 -10.80859 -10.66155 -10.49355 -10.32233 -10.20829 -9.95158 -9.87203 -9.67820 -9.58606 -9.02224 -8.86528 -8.82565 -6.91156 -5.76497 -3.04994 0.21948 0.44671 1.84874 1.89790 2.32711 2.66323 3.21867 3.43029 3.47962 3.49829 3.71795 3.81042 4.06011 4.09938 4.27074 4.55712 4.57275 4.61385 4.76704 4.81082 4.84304 4.92949 5.07936 5.11669 5.22376 5.33649 5.45698 5.54174 5.56897 5.58684 5.65753 5.69078 5.79550 5.81041 5.88641 5.99042 6.03348 6.14251 6.31410 6.34851 6.40821 6.44136 6.51725 6.77534 6.86446 6.91508 7.07860 7.33680 7.69395 7.82522 8.42841 9.53568 10.12941 10.46935 11.46572 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002196 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.241778 B =12746.257370 C =14269.080658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.153 3.847 11 C -0.121 4.121 12 C -0.082 4.082 13 C -0.129 4.129 14 C 0.112 3.888 15 N -0.601 5.601 16 C 0.573 3.427 17 O -0.537 6.537 18 C -0.223 4.223 19 C 0.203 3.797 20 N -0.503 5.503 21 C 0.329 3.671 22 N -0.491 5.491 23 H 0.446 0.554 24 N -0.235 5.235 25 C 0.099 3.901 26 C -0.233 4.233 27 C 0.063 3.937 28 C 0.097 3.903 29 C -0.132 4.132 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.016 0.984 33 H 0.019 0.981 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.173 0.827 42 H 0.207 0.793 43 H 0.150 0.850 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.496 -25.156 -8.546 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.159 4.159 12 C -0.101 4.101 13 C -0.167 4.167 14 C -0.009 4.009 15 N -0.334 5.334 16 C 0.360 3.640 17 O -0.414 6.414 18 C -0.231 4.231 19 C 0.033 3.967 20 N -0.217 5.217 21 C 0.088 3.912 22 N -0.208 5.208 23 H 0.292 0.708 24 N -0.048 5.048 25 C -0.100 4.100 26 C -0.244 4.244 27 C 0.034 3.966 28 C -0.025 4.025 29 C -0.170 4.170 30 H 0.065 0.935 31 H 0.216 0.784 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.190 0.810 42 H 0.223 0.777 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.781 -25.404 -9.576 28.533 hybrid contribution -0.535 1.096 0.555 1.340 sum 8.246 -24.307 -9.021 27.207 Atomic orbital electron populations 1.69656 1.05122 1.25629 1.57893 1.24749 0.95536 0.97721 1.03138 0.86192 0.78651 0.83860 0.77516 1.21736 1.21754 1.20764 1.19235 0.91004 0.84255 1.42505 0.91240 1.42391 1.05899 1.00151 1.89457 1.20700 0.93617 0.85616 0.97550 1.21760 0.98693 0.93310 1.02117 1.21088 0.96971 0.94580 0.97504 1.21994 0.98165 0.93537 1.03040 1.21686 0.93629 0.99109 0.86519 1.48125 1.39899 1.19279 1.26071 1.17874 0.81579 0.82243 0.82304 1.90802 1.41187 1.35076 1.74329 1.20580 0.96133 1.11396 0.94944 1.22943 0.88894 0.89058 0.95792 1.66741 1.39058 1.19622 0.96257 1.19164 0.89945 0.94515 0.87545 1.45858 1.11319 1.62192 1.01456 0.70773 1.76760 0.96899 1.16260 1.14860 1.25190 0.97422 0.97483 0.89914 1.20431 0.94777 1.13804 0.95345 1.21035 0.99947 0.87115 0.88514 1.22170 0.92006 0.86287 1.02064 1.22048 0.99932 0.96364 0.98636 0.93525 0.78359 0.96621 0.96353 0.92059 0.91855 0.90864 0.91449 0.90357 0.91138 0.88984 0.80968 0.77665 0.83195 0.89698 0.90482 0.91404 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.74 -18.67 5.60 -59.90 -0.34 -19.00 16 10 C 0.15 2.95 6.02 -4.04 -0.02 2.93 16 11 C -0.12 -1.82 4.80 -26.73 -0.13 -1.95 16 12 C -0.08 -0.92 2.15 -90.58 -0.19 -1.11 16 13 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 14 C 0.11 1.04 6.41 -3.71 -0.02 1.01 16 15 N -0.60 -5.67 2.98 -173.71 -0.52 -6.18 16 16 C 0.57 6.15 7.26 -12.41 -0.09 6.06 16 17 O -0.54 -7.46 16.47 5.30 0.09 -7.37 16 18 C -0.22 -2.05 5.03 -104.84 -0.53 -2.58 16 19 C 0.20 1.71 8.52 -17.09 -0.15 1.56 16 20 N -0.50 -4.85 10.37 -12.03 -0.12 -4.98 16 21 C 0.33 3.13 8.47 -156.10 -1.32 1.81 16 22 N -0.49 -4.02 7.33 31.15 0.23 -3.79 16 23 H 0.45 2.59 8.96 -182.82 -1.64 0.95 16 24 N -0.23 -1.96 12.54 31.87 0.40 -1.56 16 25 C 0.10 0.67 12.30 -15.15 -0.19 0.49 16 26 C -0.23 -1.99 6.36 -105.20 -0.67 -2.66 16 27 C 0.06 0.53 9.93 -38.58 -0.38 0.14 16 28 C 0.10 0.79 5.37 -3.56 -0.02 0.77 16 29 C -0.13 -1.36 5.15 -26.61 -0.14 -1.50 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.02 0.36 6.53 -51.93 -0.34 0.02 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.93 7.02 -51.93 -0.36 0.57 16 41 H 0.17 1.05 7.01 -52.49 -0.37 0.68 16 42 H 0.21 0.56 8.06 -52.48 -0.42 0.14 16 43 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.08 0.64 4.55 -51.93 -0.24 0.41 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.95 6.50 -51.93 -0.34 0.61 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -35.30 381.62 -10.85 -46.14 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.79 Total: 5.12 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -4.24 Total: -3.84 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: 0.37 Total: -63.21 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: 0.09 Total: -7.37 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.30 -10.85 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715171663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.290 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds