Wall clock time and date at job start Wed Apr 1 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99994 * 2 1 4 4 H 1.48502 * 109.47072 * 269.99590 * 3 2 1 5 5 H 1.48500 * 109.47434 * 29.99782 * 3 2 1 6 6 H 1.48500 * 109.47390 * 149.99607 * 3 2 1 7 7 C 1.38811 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00326 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99540 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99469 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46895 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47330 * 179.97438 * 11 10 9 13 13 C 1.53038 * 109.45997 * 175.00146 * 12 11 10 14 14 C 1.53196 * 109.31070 * 181.38775 * 13 12 11 15 15 N 1.46929 * 108.89389 * 305.29236 * 14 13 12 16 16 C 1.34775 * 120.63044 * 233.68398 * 15 14 13 17 17 O 1.21579 * 119.99741 * 356.19028 * 16 15 14 18 18 C 1.47679 * 119.99845 * 176.19179 * 16 15 14 19 19 C 1.40188 * 120.41027 * 50.10770 * 18 16 15 20 20 N 1.31196 * 121.37222 * 179.97438 * 19 18 16 21 21 C 1.32922 * 121.84519 * 359.97438 * 20 19 18 22 22 N 1.36631 * 133.26857 * 180.02562 * 21 20 19 23 23 H 0.97002 * 125.34292 * 0.02562 * 22 21 20 24 24 N 1.39801 * 109.32262 * 179.97438 * 22 21 20 25 25 C 1.30204 * 110.12796 * 0.02562 * 24 22 21 26 26 C 1.41069 * 120.20572 * 0.02562 * 21 20 19 27 27 C 1.39510 * 120.40770 * 229.82739 * 18 16 15 28 28 C 1.47203 * 118.55360 * 53.54011 * 15 14 13 29 29 C 1.53035 * 109.46176 * 295.07094 * 12 11 10 30 30 H 0.96998 * 120.00269 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00536 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47653 * 60.00587 * 10 9 7 33 33 H 1.09005 * 109.47345 * 299.99535 * 10 9 7 34 34 H 1.09001 * 109.46627 * 59.99791 * 11 10 9 35 35 H 1.08999 * 109.47209 * 300.00452 * 11 10 9 36 36 H 1.08996 * 109.45774 * 55.02608 * 12 11 10 37 37 H 1.08999 * 109.49949 * 61.43460 * 13 12 11 38 38 H 1.09001 * 109.52344 * 301.35015 * 13 12 11 39 39 H 1.09004 * 109.58719 * 65.15067 * 14 13 12 40 40 H 1.09000 * 109.58498 * 185.43435 * 14 13 12 41 41 H 1.07996 * 119.31459 * 359.97382 * 19 18 16 42 42 H 1.08005 * 126.20255 * 179.97438 * 25 24 22 43 43 H 1.07993 * 121.02806 * 359.97438 * 27 18 16 44 44 H 1.09004 * 109.53222 * 186.67673 * 28 15 14 45 45 H 1.09005 * 109.67798 * 66.36981 * 28 15 14 46 46 H 1.09006 * 109.49940 * 298.56363 * 29 12 11 47 47 H 1.09001 * 109.50169 * 58.65887 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0008 12 6 1.8288 -6.1447 0.0013 13 6 0.8388 -7.3050 0.1262 14 6 1.6105 -8.6279 0.1612 15 7 2.4787 -8.7038 -1.0217 16 6 2.4234 -9.7680 -1.8469 17 8 1.7005 -10.7081 -1.5789 18 6 3.2408 -9.7920 -3.0766 19 6 4.6116 -9.5034 -3.0232 20 7 5.3556 -9.5198 -4.1037 21 6 4.8506 -9.8098 -5.2986 22 7 5.3938 -9.8943 -6.5494 23 1 6.3259 -9.7383 -6.7681 24 7 4.3958 -10.2419 -7.4647 25 6 3.2548 -10.3792 -6.8527 26 6 3.4794 -10.1114 -5.4354 27 6 2.6594 -10.1077 -4.3049 28 6 3.4062 -7.5918 -1.2862 29 6 2.6144 -6.2805 -1.3050 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.6840 -3.7141 0.8922 33 1 2.6854 -3.7149 -0.8879 34 1 0.4382 -4.7621 -0.8900 35 1 0.4361 -4.7618 0.8900 36 1 2.5199 -6.1647 0.8440 37 1 0.1632 -7.3005 -0.7292 38 1 0.2630 -7.1953 1.0451 39 1 2.2190 -8.6722 1.0645 40 1 0.9078 -9.4612 0.1528 41 1 5.0646 -9.2627 -2.0729 42 1 2.3130 -10.6432 -7.3107 43 1 1.6073 -10.3396 -4.3796 44 1 3.8884 -7.7414 -2.2523 45 1 4.1628 -7.5506 -0.5026 46 1 1.9221 -6.2856 -2.1470 47 1 3.3028 -5.4413 -1.4046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715171663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:05 Heat of formation + Delta-G solvation = 49.819029 kcal Electronic energy + Delta-G solvation = -29011.693877 eV Core-core repulsion = 25001.923121 eV Total energy + Delta-G solvation = -4009.770757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.74990 -41.32985 -39.26328 -38.67242 -36.87286 -35.05985 -34.35775 -33.11060 -32.31611 -31.80175 -31.08157 -29.81995 -26.79870 -25.50902 -25.19346 -24.22325 -24.07720 -22.95473 -22.41169 -21.45267 -20.28672 -19.51737 -19.14655 -18.83399 -17.53505 -17.38008 -16.69861 -16.63574 -16.45707 -16.14146 -15.82372 -15.47462 -15.40249 -15.24127 -14.94048 -14.73418 -14.71769 -14.41564 -14.11315 -14.04224 -13.84699 -13.71555 -13.11985 -13.01938 -12.83561 -12.48881 -12.34727 -12.28547 -12.15619 -12.08662 -11.95665 -11.89459 -11.61387 -11.43769 -11.16710 -11.15769 -10.87296 -10.59332 -10.22198 -9.75628 -9.53850 -8.97945 -7.94964 -5.23661 -0.38553 -0.22442 1.27954 1.34089 1.47421 1.49253 1.53774 1.57733 1.92976 2.55237 2.56583 3.13653 3.22849 3.38811 3.41613 3.50572 3.66294 3.73309 3.80716 3.87324 4.03239 4.12763 4.24162 4.28284 4.37612 4.43239 4.52083 4.53379 4.62981 4.66748 4.78739 4.82084 4.88040 4.93996 5.00375 5.06152 5.09411 5.13341 5.24185 5.30331 5.33637 5.42071 5.50342 5.56907 5.61433 5.97198 6.18915 6.28180 6.31054 6.71920 7.03028 7.33588 8.12014 8.33356 9.28940 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002196 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.241778 B =12746.257370 C =14269.080658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.751 5.751 10 C 0.150 3.850 11 C -0.109 4.109 12 C -0.073 4.073 13 C -0.122 4.122 14 C 0.114 3.886 15 N -0.598 5.598 16 C 0.576 3.424 17 O -0.573 6.573 18 C -0.235 4.235 19 C 0.206 3.794 20 N -0.518 5.518 21 C 0.312 3.688 22 N -0.492 5.492 23 H 0.453 0.547 24 N -0.256 5.256 25 C 0.110 3.890 26 C -0.245 4.245 27 C 0.065 3.935 28 C 0.102 3.898 29 C -0.130 4.130 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.195 0.805 42 H 0.244 0.756 43 H 0.163 0.837 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.055 0.945 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.792 -25.837 -8.546 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.394 5.394 10 C 0.024 3.976 11 C -0.147 4.147 12 C -0.092 4.092 13 C -0.160 4.160 14 C -0.007 4.007 15 N -0.329 5.329 16 C 0.364 3.636 17 O -0.453 6.453 18 C -0.242 4.242 19 C 0.037 3.963 20 N -0.233 5.233 21 C 0.071 3.929 22 N -0.210 5.210 23 H 0.300 0.700 24 N -0.069 5.069 25 C -0.088 4.088 26 C -0.255 4.255 27 C 0.036 3.964 28 C -0.019 4.019 29 C -0.168 4.168 30 H 0.060 0.940 31 H 0.203 0.797 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.212 0.788 42 H 0.260 0.740 43 H 0.181 0.819 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.074 0.926 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.135 -26.101 -9.586 29.595 hybrid contribution -0.938 1.264 0.539 1.663 sum 9.198 -24.838 -9.046 27.988 Atomic orbital electron populations 1.69816 1.06682 1.26073 1.59692 1.25603 0.96432 1.01248 1.03852 0.85132 0.77761 0.79391 0.77455 1.21406 1.22202 1.19251 1.19666 0.91547 0.85451 1.40956 0.90542 1.42678 1.05681 1.01606 1.89411 1.20909 0.94301 0.84666 0.97678 1.21636 0.97871 0.93857 1.01314 1.21014 0.97061 0.92652 0.98505 1.21909 0.97758 0.93311 1.03023 1.21693 0.93763 0.98103 0.87179 1.48184 1.39793 1.19150 1.25791 1.18032 0.81107 0.81926 0.82520 1.90784 1.42897 1.36479 1.75177 1.20533 0.96435 1.12686 0.94596 1.23263 0.88565 0.88203 0.96305 1.66786 1.39462 1.20428 0.96586 1.19458 0.90741 0.94761 0.87897 1.45935 1.11818 1.62060 1.01139 0.69999 1.76757 0.97467 1.17390 1.15307 1.25841 0.98253 0.95693 0.89044 1.20633 0.94474 1.14139 0.96234 1.21234 1.00648 0.86195 0.88311 1.22230 0.91718 0.84474 1.03523 1.21994 0.99688 0.97478 0.97630 0.94024 0.79679 0.96200 0.95698 0.93174 0.92397 0.89590 0.92582 0.89532 0.89213 0.89859 0.78838 0.74028 0.81897 0.88899 0.88053 0.92622 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.91 13.06 21.65 0.28 -59.62 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -13.67 9.99 84.03 0.84 -12.84 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -38.27 5.60 -343.43 -1.92 -40.19 16 10 C 0.15 5.69 6.02 86.38 0.52 6.21 16 11 C -0.11 -3.20 4.80 30.60 0.15 -3.05 16 12 C -0.07 -1.50 2.15 -10.77 -0.02 -1.52 16 13 C -0.12 -2.20 5.36 30.67 0.16 -2.03 16 14 C 0.11 1.89 6.41 86.36 0.55 2.44 16 15 N -0.60 -10.11 2.98 -821.75 -2.45 -12.57 16 16 C 0.58 11.65 7.26 86.74 0.63 12.28 16 17 O -0.57 -15.57 16.47 -3.97 -0.07 -15.64 16 18 C -0.23 -4.02 5.03 -20.00 -0.10 -4.12 16 19 C 0.21 3.15 8.52 85.26 0.73 3.88 16 20 N -0.52 -9.43 10.37 -191.96 -1.99 -11.42 16 21 C 0.31 5.68 8.47 134.18 1.14 6.81 16 22 N -0.49 -7.73 7.33 -55.36 -0.41 -8.13 16 23 H 0.45 5.12 8.96 -213.51 -1.91 3.21 16 24 N -0.26 -4.00 12.54 -53.07 -0.67 -4.66 16 25 C 0.11 1.31 12.30 86.94 1.07 2.38 16 26 C -0.24 -3.87 6.36 -20.24 -0.13 -4.00 16 27 C 0.06 1.01 9.93 22.92 0.23 1.24 16 28 C 0.10 1.42 5.37 86.31 0.46 1.88 16 29 C -0.13 -2.45 5.15 30.67 0.16 -2.29 16 30 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.37 20.25 7.67 -92.71 -0.71 19.54 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.03 0.93 6.53 -2.38 -0.02 0.91 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.08 1.58 7.02 -2.39 -0.02 1.57 16 41 H 0.20 1.90 7.01 -2.91 -0.02 1.88 16 42 H 0.24 0.65 8.06 -2.91 -0.02 0.63 16 43 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 44 H 0.09 1.19 4.55 -2.39 -0.01 1.18 16 45 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.08 1.63 6.50 -2.39 -0.02 1.62 16 Total: -1.00 -75.99 381.62 0.06 -75.94 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -1.60 Total: 25.09 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 6.85 Total: 3.15 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -7.16 Total: -136.60 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.07 Total: -15.64 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.99 0.06 -75.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715171663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.757 kcal (2) G-P(sol) polarization free energy of solvation -75.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds