Wall clock time and date at job start Wed Apr 1 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00128 * 2 1 4 4 H 1.48500 * 109.47125 * 239.99516 * 3 2 1 5 5 H 1.48496 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47375 * 119.99805 * 3 2 1 7 7 C 1.38814 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99836 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00033 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47204 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47070 * 179.97438 * 11 10 9 13 13 H 1.08992 * 110.89059 * 51.11894 * 12 11 10 14 14 C 1.55164 * 111.00141 * 287.19489 * 12 11 10 15 15 C 1.54330 * 102.94081 * 206.42304 * 14 12 11 16 16 N 1.47026 * 107.26840 * 22.19556 * 15 14 12 17 17 C 1.34776 * 125.64607 * 181.09447 * 16 15 14 18 18 O 1.21273 * 120.00077 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99948 * 359.97236 * 17 16 15 20 20 N 1.46500 * 109.46875 * 180.02562 * 19 17 16 21 21 N 1.39831 * 125.38642 * 269.69003 * 20 19 17 22 22 C 1.30242 * 110.08994 * 179.84182 * 21 20 19 23 23 C 1.45857 * 107.65702 * 0.41849 * 22 21 20 24 24 C 1.39995 * 134.26146 * 179.69579 * 23 22 21 25 25 C 1.37012 * 118.15656 * 180.02562 * 24 23 22 26 26 C 1.38807 * 119.64917 * 359.97438 * 25 24 23 27 27 N 1.31515 * 121.58544 * 0.02562 * 26 25 24 28 28 C 1.32762 * 121.46862 * 359.97438 * 27 26 25 29 29 C 1.47422 * 108.70500 * 1.05856 * 16 15 14 30 30 H 0.97000 * 119.99967 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00319 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.46923 * 59.99631 * 10 9 7 33 33 H 1.08998 * 109.46619 * 299.99708 * 10 9 7 34 34 H 1.09004 * 109.46998 * 59.99627 * 11 10 9 35 35 H 1.09000 * 109.47219 * 300.00312 * 11 10 9 36 36 H 1.08999 * 110.71932 * 88.06637 * 14 12 11 37 37 H 1.08995 * 110.72046 * 324.78892 * 14 12 11 38 38 H 1.08998 * 109.88224 * 262.77875 * 15 14 12 39 39 H 1.08998 * 109.88221 * 141.61268 * 15 14 12 40 40 H 1.08996 * 109.47377 * 300.00135 * 19 17 16 41 41 H 1.08999 * 109.46945 * 60.00043 * 19 17 16 42 42 H 1.08002 * 126.17307 * 180.15797 * 22 21 20 43 43 H 1.08001 * 120.91720 * 0.04751 * 24 23 22 44 44 H 1.08005 * 120.17736 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.21047 * 180.02562 * 26 25 24 46 46 H 1.08996 * 110.36785 * 94.70778 * 29 16 15 47 47 H 1.09004 * 110.36699 * 216.92190 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 6 1.0637 -4.8198 0.0021 12 6 1.8286 -6.1448 0.0026 13 1 2.5765 -6.1615 0.7953 14 6 2.4776 -6.4128 -1.3811 15 6 2.5735 -7.9525 -1.4254 16 7 1.5799 -8.4791 -0.4783 17 6 1.3647 -9.7821 -0.2093 18 8 0.5150 -10.1031 0.5942 19 6 2.1799 -10.8402 -0.9072 20 7 1.7576 -12.1651 -0.4462 21 7 2.3019 -12.8556 0.6412 22 6 1.7031 -14.0029 0.7877 23 6 0.6968 -14.1140 -0.2623 24 6 -0.2373 -15.0932 -0.6208 25 6 -1.0465 -14.8506 -1.6995 26 6 -0.9209 -13.6575 -2.3977 27 7 -0.0391 -12.7457 -2.0504 28 6 0.7718 -12.9249 -1.0145 29 6 0.8586 -7.3459 0.1290 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6840 -3.7142 0.8922 33 1 2.6852 -3.7150 -0.8878 34 1 0.4373 -4.7626 -0.8882 35 1 0.4366 -4.7614 0.8917 36 1 3.4690 -5.9630 -1.4357 37 1 1.8403 -6.0428 -2.1841 38 1 3.5731 -8.2703 -1.1290 39 1 2.3521 -8.3088 -2.4314 40 1 2.0277 -10.7650 -1.9838 41 1 3.2357 -10.6950 -0.6785 42 1 1.9163 -14.7409 1.5468 43 1 -0.3179 -16.0140 -0.0624 44 1 -1.7783 -15.5839 -2.0050 45 1 -1.5627 -13.4736 -3.2466 46 1 -0.0640 -7.1474 -0.4164 47 1 0.6419 -7.5520 1.1772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733658621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:44 Heat of formation + Delta-G solvation = 86.075198 kcal Electronic energy + Delta-G solvation = -28377.201551 eV Core-core repulsion = 24369.002979 eV Total energy + Delta-G solvation = -4008.198571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.93431 -40.24152 -38.52433 -37.81816 -35.17772 -34.20840 -33.08664 -32.14256 -30.94284 -30.47690 -29.63812 -28.42478 -26.79718 -24.35837 -24.02426 -23.16398 -22.98271 -21.75805 -21.22567 -20.21662 -19.55716 -18.06692 -17.68075 -17.42095 -17.11243 -16.54270 -16.22981 -15.85586 -15.43684 -14.80711 -14.70414 -14.57998 -14.36507 -14.12429 -13.74877 -13.59673 -13.41352 -13.21638 -13.12097 -12.98234 -12.82073 -12.74465 -12.43790 -12.20545 -11.67319 -11.37721 -11.33884 -11.11343 -11.07331 -10.81387 -10.67915 -10.51209 -10.34260 -10.19539 -10.03188 -9.84972 -9.68347 -9.36202 -8.87116 -8.85377 -8.67904 -6.91626 -5.75807 -3.04669 0.40496 0.92412 1.62658 2.08979 2.31896 2.75797 3.42320 3.44295 3.48422 3.49788 3.77570 3.88920 4.08129 4.25509 4.39125 4.43660 4.56293 4.58145 4.63302 4.67238 4.71847 4.82128 4.96796 5.03827 5.14070 5.21193 5.24598 5.35282 5.54130 5.59556 5.64267 5.72288 5.76431 5.80702 5.84976 5.86356 6.02810 6.08114 6.12880 6.24116 6.35327 6.37317 6.40414 6.83309 6.87956 7.06428 7.23282 7.54459 7.69474 7.86248 8.43235 9.53973 10.12671 10.46871 11.47072 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.031454 B = 0.001606 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.987916 B =17431.695233 C =17720.706761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.126 4.126 15 C 0.094 3.906 16 N -0.615 5.615 17 C 0.513 3.487 18 O -0.527 6.527 19 C 0.131 3.869 20 N -0.378 5.378 21 N -0.228 5.228 22 C 0.086 3.914 23 C -0.228 4.228 24 C 0.006 3.994 25 C -0.219 4.219 26 C 0.170 3.830 27 N -0.502 5.502 28 C 0.324 3.676 29 C 0.111 3.889 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.203 0.797 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.166 0.834 46 H 0.072 0.928 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.877 -34.542 -5.147 35.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.104 0.896 14 C -0.164 4.164 15 C -0.029 4.029 16 N -0.350 5.350 17 C 0.299 3.701 18 O -0.402 6.402 19 C 0.005 3.995 20 N -0.168 5.168 21 N -0.039 5.039 22 C -0.113 4.113 23 C -0.238 4.238 24 C -0.022 4.022 25 C -0.241 4.241 26 C 0.001 3.999 27 N -0.217 5.217 28 C 0.086 3.914 29 C -0.011 4.011 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.219 0.781 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.183 0.817 46 H 0.090 0.910 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.643 -32.909 -4.722 33.445 hybrid contribution -0.524 -0.150 0.137 0.562 sum 3.119 -33.059 -4.585 33.520 Atomic orbital electron populations 1.69651 1.05121 1.25767 1.57702 1.24754 0.95541 0.97729 1.03042 0.86253 0.78504 0.83508 0.77829 1.21278 1.21672 1.21275 1.19191 0.90996 0.84228 1.42789 0.91253 1.42368 1.05902 1.00072 1.89533 1.20620 0.93450 0.85450 0.97725 1.21672 0.98680 0.92465 1.02573 1.22341 0.97463 0.94006 0.97512 0.89595 1.22745 1.02854 0.92570 0.98223 1.22219 0.91950 0.95930 0.92789 1.48489 1.38418 1.04888 1.43249 1.20437 0.84371 0.82224 0.83062 1.90754 1.33988 1.80745 1.34725 1.21385 1.00346 0.77699 1.00059 1.47557 1.29798 1.14696 1.24706 1.76748 1.19437 1.06243 1.01457 1.25067 0.93315 0.95110 0.97820 1.20505 1.03871 0.98080 1.01372 1.20780 0.90341 0.96906 0.94173 1.21660 1.03412 1.00129 0.98874 1.22765 0.92046 0.88055 0.97019 1.66748 1.06525 1.33115 1.15281 1.18927 0.90667 0.89603 0.92194 1.22380 0.95353 0.84213 0.99173 0.93463 0.78307 0.96537 0.96287 0.91514 0.91504 0.89403 0.89914 0.91144 0.91108 0.85774 0.85838 0.78062 0.84198 0.84071 0.81737 0.91008 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.73 5.60 -59.90 -0.34 -19.07 16 10 C 0.16 3.03 6.16 -4.04 -0.02 3.00 16 11 C -0.12 -1.77 4.84 -26.73 -0.13 -1.90 16 12 C -0.09 -1.13 3.01 -88.47 -0.27 -1.39 16 13 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 14 C -0.13 -1.25 5.90 -24.89 -0.15 -1.39 16 15 C 0.09 0.79 6.49 -3.06 -0.02 0.77 16 16 N -0.62 -7.12 3.33 -170.52 -0.57 -7.69 16 17 C 0.51 6.81 7.92 -10.98 -0.09 6.73 16 18 O -0.53 -9.39 16.68 5.56 0.09 -9.30 16 19 C 0.13 1.32 6.08 -5.19 -0.03 1.29 16 20 N -0.38 -4.62 3.13 -61.60 -0.19 -4.81 16 21 N -0.23 -2.67 12.40 31.85 0.39 -2.28 16 22 C 0.09 0.76 12.29 -15.18 -0.19 0.58 16 23 C -0.23 -2.24 6.38 -105.18 -0.67 -2.91 16 24 C 0.01 0.04 10.18 -39.37 -0.40 -0.36 16 25 C -0.22 -1.34 10.04 -39.82 -0.40 -1.74 16 26 C 0.17 1.35 11.15 -17.48 -0.19 1.15 16 27 N -0.50 -5.80 10.40 -12.34 -0.13 -5.92 16 28 C 0.32 3.95 7.97 -156.11 -1.24 2.71 16 29 C 0.11 1.39 6.38 -2.53 -0.02 1.38 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.37 7.75 -51.93 -0.40 -0.04 16 34 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.20 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 45 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 47 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -38.39 396.60 -10.12 -48.51 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.99 Total: 4.45 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -4.06 Total: 0.43 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -0.10 Total: -67.54 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.39 -10.12 -48.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733658621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.581 kcal (2) G-P(sol) polarization free energy of solvation -38.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds