Wall clock time and date at job start Wed Apr 1 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47556 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47149 * 300.00253 * 3 2 1 6 6 H 1.48503 * 109.47120 * 59.99769 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00499 * 197.02522 * 7 2 1 9 9 N 1.36941 * 119.99583 * 17.02141 * 7 2 1 10 10 C 1.47079 * 120.88448 * 26.58782 * 9 7 2 11 11 C 1.53237 * 108.52132 * 128.78817 * 10 9 7 12 12 N 1.46902 * 109.33805 * 53.83315 * 11 10 9 13 13 C 1.46899 * 110.99712 * 172.74361 * 12 11 10 14 14 C 1.53001 * 109.47218 * 170.00213 * 13 12 11 15 15 N 1.46498 * 109.47542 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00107 * 179.97438 * 15 14 13 17 17 O 1.21593 * 120.00182 * 0.02562 * 16 15 14 18 18 C 1.47590 * 119.99780 * 179.97438 * 16 15 14 19 19 C 1.36579 * 125.91729 * 179.71625 * 18 16 15 20 20 N 1.36188 * 107.09369 * 179.84419 * 19 18 16 21 21 C 1.36680 * 132.29391 * 180.09127 * 20 19 18 22 22 C 1.34854 * 120.63889 * 180.36094 * 21 20 19 23 23 C 1.40570 * 120.34311 * 359.97438 * 22 21 20 24 24 C 1.35899 * 119.73132 * 359.97438 * 23 22 21 25 25 C 1.37273 * 107.34269 * 0.41382 * 20 19 18 26 26 N 1.32233 * 108.37628 * 359.74174 * 25 20 19 27 27 C 1.46891 * 111.27100 * 296.89049 * 12 11 10 28 28 C 1.47083 * 120.88221 * 206.56035 * 9 7 2 29 29 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.62505 * 9.08343 * 10 9 7 31 31 H 1.08998 * 109.78944 * 248.60007 * 10 9 7 32 32 H 1.09004 * 109.49060 * 173.79056 * 11 10 9 33 33 H 1.08999 * 109.49752 * 293.87257 * 11 10 9 34 34 H 1.09008 * 109.47403 * 289.99718 * 13 12 11 35 35 H 1.08994 * 109.47392 * 49.99848 * 13 12 11 36 36 H 1.09008 * 109.46529 * 300.00040 * 14 13 12 37 37 H 1.08994 * 109.47237 * 59.99540 * 14 13 12 38 38 H 0.97001 * 119.99473 * 0.02562 * 15 14 13 39 39 H 1.07999 * 126.44945 * 359.96407 * 19 18 16 40 40 H 1.08000 * 119.67929 * 0.38328 * 21 20 19 41 41 H 1.08002 * 119.82625 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.13212 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.32547 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.49547 * 303.14748 * 27 12 11 45 45 H 1.08990 * 109.49859 * 183.06502 * 27 12 11 46 46 H 1.09001 * 109.62421 * 350.92205 * 28 9 7 47 47 H 1.09004 * 109.62775 * 111.49497 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2744 9 7 1.3705 -2.3622 -0.3461 10 6 0.2049 -2.3426 -1.2429 11 6 0.4412 -3.3530 -2.3704 12 7 0.7561 -4.6651 -1.7897 13 6 0.8204 -5.6997 -2.8306 14 6 1.3895 -6.9886 -2.2341 15 7 1.4531 -8.0206 -3.2720 16 6 1.9254 -9.2473 -2.9745 17 8 2.2983 -9.4977 -1.8446 18 6 1.9890 -10.2871 -4.0200 19 6 2.4486 -11.5626 -3.8546 20 7 2.3319 -12.1893 -5.0580 21 6 2.6342 -13.4578 -5.4676 22 6 2.4251 -13.8357 -6.7451 23 6 1.8912 -12.9277 -7.6759 24 6 1.5844 -11.6631 -7.2841 25 6 1.8097 -11.2801 -5.9440 26 7 1.6095 -10.1410 -5.3029 27 6 2.0033 -4.6196 -1.0151 28 6 1.8311 -3.6610 0.1680 29 1 -0.4850 0.8401 0.0004 30 1 0.0843 -1.3448 -1.6648 31 1 -0.6924 -2.6163 -0.6879 32 1 -0.4576 -3.4322 -2.9821 33 1 1.2744 -3.0196 -2.9890 34 1 -0.1811 -5.8894 -3.2168 35 1 1.4641 -5.3596 -3.6417 36 1 2.3911 -6.7989 -1.8480 37 1 0.7458 -7.3288 -1.4230 38 1 1.1560 -7.8207 -4.1735 39 1 2.8306 -11.9935 -2.9410 40 1 3.0442 -14.1644 -4.7612 41 1 2.6684 -14.8415 -7.0544 42 1 1.7255 -13.2338 -8.6983 43 1 1.1734 -10.9578 -7.9912 44 1 2.8148 -4.2685 -1.6525 45 1 2.2376 -5.6171 -0.6437 46 1 2.7856 -3.5347 0.6790 47 1 1.0921 -4.0634 0.8609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752375708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:32 Heat of formation + Delta-G solvation = 98.558704 kcal Electronic energy + Delta-G solvation = -28450.458453 eV Core-core repulsion = 24442.801208 eV Total energy + Delta-G solvation = -4007.657246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.31486 -39.70850 -38.25051 -37.60843 -35.41623 -34.28722 -33.83284 -31.43024 -30.96923 -30.09602 -29.34735 -28.61649 -26.19395 -24.74672 -23.59213 -23.13615 -23.05034 -22.35167 -21.10071 -20.40050 -19.05591 -18.50839 -17.47708 -17.24624 -16.79119 -16.53788 -15.99719 -15.68645 -15.48150 -15.12144 -14.91956 -14.59111 -14.35502 -14.30544 -14.09108 -13.60595 -13.47344 -13.25616 -12.98827 -12.90202 -12.49605 -12.35006 -12.19393 -11.62205 -11.61748 -11.33690 -11.28362 -10.99707 -10.81886 -10.70105 -10.42222 -10.32356 -10.21760 -10.00995 -9.69840 -9.56652 -9.42772 -9.04677 -8.47123 -8.42803 -7.81138 -6.62253 -5.74255 -3.14973 0.11059 0.70480 1.69868 1.96263 2.87108 3.00432 3.30818 3.39844 3.47632 3.50025 3.57946 3.93011 4.13859 4.28363 4.48276 4.50973 4.55443 4.74808 4.87360 4.92888 5.01926 5.20061 5.24077 5.43109 5.43756 5.48246 5.58936 5.59156 5.86395 5.87966 5.91113 5.95989 5.99907 6.07963 6.19544 6.28610 6.31251 6.40053 6.45222 6.57953 6.73935 6.98740 7.12155 7.28213 7.46461 7.60166 7.67791 7.73765 7.85621 8.07692 8.47550 9.25472 9.88987 10.47629 11.34674 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.033223 B = 0.001639 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.576923 B =17080.419998 C =17447.099298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.178 3.822 11 C 0.037 3.963 12 N -0.527 5.527 13 C 0.044 3.956 14 C 0.115 3.885 15 N -0.709 5.709 16 C 0.600 3.400 17 O -0.535 6.535 18 C 0.009 3.991 19 C -0.017 4.017 20 N -0.365 5.365 21 C 0.055 3.945 22 C -0.138 4.138 23 C -0.102 4.102 24 C -0.074 4.074 25 C 0.225 3.775 26 N -0.465 5.465 27 C 0.034 3.966 28 C 0.148 3.852 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.408 0.592 39 H 0.197 0.803 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.145 0.855 43 H 0.154 0.846 44 H 0.028 0.972 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -30.207 -17.030 34.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.092 4.092 12 N -0.253 5.253 13 C -0.085 4.085 14 C -0.008 4.008 15 N -0.360 5.360 16 C 0.384 3.616 17 O -0.412 6.412 18 C -0.124 4.124 19 C -0.152 4.152 20 N -0.037 5.037 21 C -0.066 4.066 22 C -0.158 4.158 23 C -0.126 4.126 24 C -0.094 4.094 25 C -0.021 4.021 26 N -0.186 5.186 27 C -0.095 4.095 28 C 0.022 3.978 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.244 0.756 39 H 0.214 0.786 40 H 0.184 0.816 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.172 0.828 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.015 -29.569 -16.101 33.803 hybrid contribution 1.219 0.368 -0.724 1.464 sum 4.233 -29.200 -16.825 33.966 Atomic orbital electron populations 1.70041 1.05186 1.25297 1.54324 1.25019 0.95311 0.98323 1.01174 0.86230 0.79317 0.84038 0.77241 1.20339 1.21626 1.21740 1.19248 0.92616 0.84785 1.41286 0.91595 1.44135 1.34119 1.01290 1.52361 1.20860 0.89036 0.96525 0.88417 1.22920 0.98727 0.88922 0.98677 1.62033 1.34392 1.05755 1.23114 1.22253 1.00648 0.91434 0.94138 1.21636 1.02279 0.86476 0.90414 1.45756 1.64255 1.11224 1.14814 1.16826 0.77677 0.81213 0.85851 1.90827 1.48886 1.80712 1.20734 1.20645 1.05321 0.94099 0.92353 1.22642 1.09627 0.93736 0.89205 1.42770 1.40419 1.10404 1.10122 1.21712 1.02196 0.84713 0.97961 1.20887 1.01724 1.01569 0.91648 1.21091 0.98246 0.92631 1.00641 1.20376 1.00712 0.97377 0.90967 1.20978 1.02485 0.85662 0.92926 1.70829 1.22320 1.21315 1.04132 1.22802 0.89723 0.99870 0.97153 1.20990 0.97828 0.86402 0.92619 0.93707 0.89299 0.95474 0.92017 0.95557 0.90508 0.94817 0.90646 0.90153 0.75629 0.78592 0.81594 0.82918 0.83729 0.82806 0.95326 0.91210 0.92586 0.95532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 11.15 55.49 0.62 -26.00 16 2 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 3 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.25 -7.01 9.63 -15.06 -0.15 -7.16 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.60 -15.45 3.04 -172.01 -0.52 -15.97 16 10 C 0.18 4.37 5.42 -3.60 -0.02 4.35 16 11 C 0.04 0.73 5.58 -3.70 -0.02 0.71 16 12 N -0.53 -9.57 4.78 -234.33 -1.12 -10.69 16 13 C 0.04 0.63 5.38 -3.82 -0.02 0.61 16 14 C 0.12 1.59 4.93 -4.04 -0.02 1.57 16 15 N -0.71 -9.04 5.55 -61.33 -0.34 -9.38 16 16 C 0.60 8.37 7.82 -12.45 -0.10 8.27 16 17 O -0.54 -8.85 16.87 5.28 0.09 -8.76 16 18 C 0.01 0.11 6.94 -83.44 -0.58 -0.47 16 19 C -0.02 -0.16 11.47 -16.22 -0.19 -0.35 16 20 N -0.37 -3.04 2.93 -62.37 -0.18 -3.22 16 21 C 0.06 0.26 10.93 -16.59 -0.18 0.07 16 22 C -0.14 -0.43 9.98 -39.90 -0.40 -0.83 16 23 C -0.10 -0.38 10.06 -39.54 -0.40 -0.78 16 24 C -0.07 -0.47 10.11 -39.30 -0.40 -0.87 16 25 C 0.23 2.18 7.79 -156.04 -1.22 0.96 16 26 N -0.46 -5.52 11.01 -9.35 -0.10 -5.63 16 27 C 0.03 0.63 5.04 -3.71 -0.02 0.61 16 28 C 0.15 3.27 6.69 -3.60 -0.02 3.24 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.09 2.40 6.12 -51.93 -0.32 2.09 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.08 1.11 6.18 -51.92 -0.32 0.79 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.41 4.62 8.17 -40.82 -0.33 4.28 16 39 H 0.20 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.17 0.26 8.06 -52.49 -0.42 -0.17 16 41 H 0.15 0.00 8.06 -52.49 -0.42 -0.42 16 42 H 0.14 0.14 8.06 -52.49 -0.42 -0.28 16 43 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.15 5.73 -51.93 -0.30 0.85 16 46 H 0.06 1.19 7.95 -51.93 -0.41 0.77 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -35.02 384.63 -11.32 -46.35 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.72 Total: 0.67 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -3.81 Total: 9.86 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.65 Total: -70.89 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.02 -11.32 -46.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752375708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.906 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds