Wall clock time and date at job start Wed Apr 1 2020 03:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47556 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47149 * 300.00253 * 3 2 1 6 6 H 1.48503 * 109.47120 * 59.99769 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00499 * 197.02522 * 7 2 1 9 9 N 1.36941 * 119.99583 * 17.02141 * 7 2 1 10 10 C 1.47079 * 120.88448 * 26.58782 * 9 7 2 11 11 C 1.53237 * 108.52132 * 128.78817 * 10 9 7 12 12 N 1.46902 * 109.33805 * 53.83315 * 11 10 9 13 13 C 1.46899 * 110.99712 * 172.74361 * 12 11 10 14 14 C 1.53001 * 109.47218 * 170.00213 * 13 12 11 15 15 N 1.46498 * 109.47542 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00107 * 179.97438 * 15 14 13 17 17 O 1.21593 * 120.00182 * 0.02562 * 16 15 14 18 18 C 1.47590 * 119.99780 * 179.97438 * 16 15 14 19 19 C 1.36579 * 125.91729 * 179.71625 * 18 16 15 20 20 N 1.36188 * 107.09369 * 179.84419 * 19 18 16 21 21 C 1.36680 * 132.29391 * 180.09127 * 20 19 18 22 22 C 1.34854 * 120.63889 * 180.36094 * 21 20 19 23 23 C 1.40570 * 120.34311 * 359.97438 * 22 21 20 24 24 C 1.35899 * 119.73132 * 359.97438 * 23 22 21 25 25 C 1.37273 * 107.34269 * 0.41382 * 20 19 18 26 26 N 1.32233 * 108.37628 * 359.74174 * 25 20 19 27 27 C 1.46891 * 111.27100 * 296.89049 * 12 11 10 28 28 C 1.47083 * 120.88221 * 206.56035 * 9 7 2 29 29 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.62505 * 9.08343 * 10 9 7 31 31 H 1.08998 * 109.78944 * 248.60007 * 10 9 7 32 32 H 1.09004 * 109.49060 * 173.79056 * 11 10 9 33 33 H 1.08999 * 109.49752 * 293.87257 * 11 10 9 34 34 H 1.09008 * 109.47403 * 289.99718 * 13 12 11 35 35 H 1.08994 * 109.47392 * 49.99848 * 13 12 11 36 36 H 1.09008 * 109.46529 * 300.00040 * 14 13 12 37 37 H 1.08994 * 109.47237 * 59.99540 * 14 13 12 38 38 H 0.97001 * 119.99473 * 0.02562 * 15 14 13 39 39 H 1.07999 * 126.44945 * 359.96407 * 19 18 16 40 40 H 1.08000 * 119.67929 * 0.38328 * 21 20 19 41 41 H 1.08002 * 119.82625 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.13212 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.32547 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.49547 * 303.14748 * 27 12 11 45 45 H 1.08990 * 109.49859 * 183.06502 * 27 12 11 46 46 H 1.09001 * 109.62421 * 350.92205 * 28 9 7 47 47 H 1.09004 * 109.62775 * 111.49497 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2744 9 7 1.3705 -2.3622 -0.3461 10 6 0.2049 -2.3426 -1.2429 11 6 0.4412 -3.3530 -2.3704 12 7 0.7561 -4.6651 -1.7897 13 6 0.8204 -5.6997 -2.8306 14 6 1.3895 -6.9886 -2.2341 15 7 1.4531 -8.0206 -3.2720 16 6 1.9254 -9.2473 -2.9745 17 8 2.2983 -9.4977 -1.8446 18 6 1.9890 -10.2871 -4.0200 19 6 2.4486 -11.5626 -3.8546 20 7 2.3319 -12.1893 -5.0580 21 6 2.6342 -13.4578 -5.4676 22 6 2.4251 -13.8357 -6.7451 23 6 1.8912 -12.9277 -7.6759 24 6 1.5844 -11.6631 -7.2841 25 6 1.8097 -11.2801 -5.9440 26 7 1.6095 -10.1410 -5.3029 27 6 2.0033 -4.6196 -1.0151 28 6 1.8311 -3.6610 0.1680 29 1 -0.4850 0.8401 0.0004 30 1 0.0843 -1.3448 -1.6648 31 1 -0.6924 -2.6163 -0.6879 32 1 -0.4576 -3.4322 -2.9821 33 1 1.2744 -3.0196 -2.9890 34 1 -0.1811 -5.8894 -3.2168 35 1 1.4641 -5.3596 -3.6417 36 1 2.3911 -6.7989 -1.8480 37 1 0.7458 -7.3288 -1.4230 38 1 1.1560 -7.8207 -4.1735 39 1 2.8306 -11.9935 -2.9410 40 1 3.0442 -14.1644 -4.7612 41 1 2.6684 -14.8415 -7.0544 42 1 1.7255 -13.2338 -8.6983 43 1 1.1734 -10.9578 -7.9912 44 1 2.8148 -4.2685 -1.6525 45 1 2.2376 -5.6171 -0.6437 46 1 2.7856 -3.5347 0.6790 47 1 1.0921 -4.0634 0.8609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752375708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:31 Heat of formation + Delta-G solvation = 74.113003 kcal Electronic energy + Delta-G solvation = -28451.518499 eV Core-core repulsion = 24442.801208 eV Total energy + Delta-G solvation = -4008.717291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.90852 -40.77338 -39.75759 -38.15979 -36.91612 -35.45817 -34.70947 -33.28265 -31.95171 -31.48389 -30.10947 -29.85054 -27.80706 -25.74315 -25.02248 -24.20545 -23.71621 -23.63663 -22.48002 -21.36717 -20.79644 -19.17137 -18.73620 -18.09995 -17.83208 -17.23521 -17.17276 -16.84139 -16.56591 -16.23080 -15.99693 -15.72927 -15.48427 -15.40508 -15.28303 -15.10448 -15.07169 -14.85341 -14.50201 -14.06616 -13.25741 -13.16673 -13.03145 -13.00336 -12.81814 -12.68347 -12.62962 -12.44402 -12.27575 -12.09734 -12.03595 -11.91182 -11.61753 -11.51848 -11.44611 -11.25237 -10.59754 -10.27900 -9.90663 -9.31175 -8.95357 -8.68928 -7.87965 -5.32591 -0.34121 0.18917 0.95081 1.40906 1.45962 1.47233 1.58382 2.02449 2.26228 2.50636 2.55906 2.93314 3.08529 3.27492 3.46266 3.66897 3.72803 3.76315 3.94017 4.02877 4.15219 4.20413 4.26261 4.28681 4.33042 4.41308 4.55843 4.60321 4.63259 4.69004 4.80037 4.84122 4.86973 4.92041 5.02115 5.11637 5.17820 5.24276 5.26882 5.30730 5.36536 5.53112 5.61079 5.68593 5.92167 6.11502 6.17944 6.32391 6.37179 6.62345 7.05670 7.13052 7.83185 8.37800 9.19187 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.033223 B = 0.001639 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.576923 B =17080.419998 C =17447.099298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.614 5.614 10 C 0.184 3.816 11 C 0.052 3.948 12 N -0.538 5.538 13 C 0.053 3.947 14 C 0.125 3.875 15 N -0.702 5.702 16 C 0.599 3.401 17 O -0.569 6.569 18 C -0.023 4.023 19 C -0.018 4.018 20 N -0.367 5.367 21 C 0.037 3.963 22 C -0.127 4.127 23 C -0.078 4.078 24 C -0.107 4.107 25 C 0.213 3.787 26 N -0.500 5.500 27 C 0.047 3.953 28 C 0.143 3.857 29 H 0.251 0.749 30 H 0.059 0.941 31 H 0.000 1.000 32 H 0.086 0.914 33 H 0.023 0.977 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.416 0.584 39 H 0.212 0.788 40 H 0.197 0.803 41 H 0.194 0.806 42 H 0.180 0.820 43 H 0.162 0.838 44 H 0.025 0.975 45 H 0.094 0.906 46 H 0.060 0.940 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.583 -33.205 -19.533 38.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.338 5.338 10 C 0.058 3.942 11 C -0.077 4.077 12 N -0.263 5.263 13 C -0.075 4.075 14 C 0.002 3.998 15 N -0.353 5.353 16 C 0.385 3.615 17 O -0.449 6.449 18 C -0.155 4.155 19 C -0.154 4.154 20 N -0.038 5.038 21 C -0.082 4.082 22 C -0.147 4.147 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.033 4.033 26 N -0.222 5.222 27 C -0.082 4.082 28 C 0.017 3.983 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.018 0.982 32 H 0.104 0.896 33 H 0.041 0.959 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.253 0.747 39 H 0.229 0.771 40 H 0.214 0.786 41 H 0.211 0.789 42 H 0.198 0.802 43 H 0.180 0.820 44 H 0.044 0.956 45 H 0.112 0.888 46 H 0.078 0.922 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.076 -32.602 -18.635 37.773 hybrid contribution 0.889 1.065 -0.056 1.389 sum 4.965 -31.537 -18.691 36.995 Atomic orbital electron populations 1.70197 1.06636 1.25831 1.55500 1.25798 0.96109 1.01482 1.01282 0.85176 0.78488 0.79715 0.76861 1.19241 1.21463 1.21851 1.19572 0.92901 0.85979 1.40980 0.91548 1.44416 1.34262 1.02083 1.53070 1.20639 0.87844 0.96452 0.89254 1.22604 0.99758 0.88631 0.96681 1.61936 1.34257 1.05623 1.24519 1.22217 1.01978 0.90160 0.93124 1.21412 1.01472 0.86509 0.90449 1.45641 1.63972 1.10803 1.14877 1.17116 0.76840 0.81623 0.85883 1.90789 1.50556 1.81371 1.22159 1.20447 1.07937 0.94671 0.92495 1.22824 1.09097 0.93236 0.90270 1.42923 1.40097 1.11488 1.09297 1.22484 1.02423 0.83715 0.99625 1.21484 0.99510 1.03050 0.90633 1.21627 0.94938 0.91276 1.02317 1.20662 1.03024 0.99141 0.89876 1.21507 1.02129 0.85489 0.94179 1.70716 1.24219 1.23086 1.04154 1.22611 0.89836 0.99963 0.95805 1.21133 0.97483 0.85605 0.94039 0.94013 0.92238 0.98213 0.89578 0.95866 0.88826 0.93787 0.91435 0.91120 0.74730 0.77124 0.78614 0.78906 0.80248 0.82000 0.95643 0.88829 0.92181 0.96535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.68 11.15 21.65 0.24 -56.44 16 2 C -0.05 -2.95 4.93 84.86 0.42 -2.54 16 3 Si 0.97 45.91 29.59 68.60 2.03 47.94 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 7 C -0.26 -15.10 9.63 84.03 0.81 -14.29 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 9 N -0.61 -32.57 3.04 -698.12 -2.12 -34.69 16 10 C 0.18 9.32 5.42 86.35 0.47 9.78 16 11 C 0.05 2.06 5.58 86.38 0.48 2.54 16 12 N -0.54 -19.08 4.78 -895.28 -4.28 -23.36 16 13 C 0.05 1.45 5.38 86.30 0.46 1.91 16 14 C 0.13 3.40 4.93 86.38 0.43 3.82 16 15 N -0.70 -17.90 5.55 -466.21 -2.59 -20.49 16 16 C 0.60 17.16 7.82 86.71 0.68 17.83 16 17 O -0.57 -19.36 16.87 -4.01 -0.07 -19.42 16 18 C -0.02 -0.59 6.94 40.80 0.28 -0.31 16 19 C -0.02 -0.35 11.47 83.63 0.96 0.61 16 20 N -0.37 -5.65 2.93 -351.25 -1.03 -6.68 16 21 C 0.04 0.23 10.93 83.16 0.91 1.14 16 22 C -0.13 -0.22 9.98 22.06 0.22 0.00 16 23 C -0.08 -0.28 10.06 22.30 0.22 -0.06 16 24 C -0.11 -1.16 10.11 22.45 0.23 -0.93 16 25 C 0.21 4.00 7.79 134.20 1.05 5.04 16 26 N -0.50 -12.12 11.01 -183.49 -2.02 -14.14 16 27 C 0.05 1.72 5.04 86.38 0.44 2.16 16 28 C 0.14 6.38 6.69 86.35 0.58 6.96 16 29 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 30 H 0.06 3.34 6.12 -2.39 -0.01 3.32 16 31 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.09 2.96 8.11 -2.38 -0.02 2.94 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.04 1.15 8.08 -2.39 -0.02 1.13 16 36 H 0.07 1.95 6.18 -2.38 -0.01 1.94 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.42 9.34 8.17 -92.71 -0.76 8.59 16 39 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.20 -0.12 8.06 -2.91 -0.02 -0.14 16 41 H 0.19 -1.18 8.06 -2.91 -0.02 -1.21 16 42 H 0.18 -0.61 8.06 -2.91 -0.02 -0.63 16 43 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 3.00 5.73 -2.39 -0.01 2.98 16 46 H 0.06 2.57 7.95 -2.39 -0.02 2.55 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -79.56 384.63 -0.97 -80.53 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.24 Total: 13.06 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: 8.63 Total: 33.69 kcal Atomic # 7 Polarization: -144.00 SS G_CDS: -11.80 Total: -155.80 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.07 Total: -19.42 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -79.56 -0.97 -80.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752375708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.644 kcal (2) G-P(sol) polarization free energy of solvation -79.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds