Wall clock time and date at job start Wed Apr 1 2020 03:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99826 * 2 1 4 4 H 1.48502 * 109.46561 * 239.99650 * 3 2 1 5 5 H 1.48498 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47126 * 120.00076 * 3 2 1 7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00477 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99706 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00084 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47545 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46807 * 305.00455 * 11 10 9 13 13 C 1.53005 * 109.46659 * 64.99865 * 11 10 9 14 14 C 1.53001 * 109.46842 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46922 * 299.99944 * 14 13 11 16 16 C 1.53000 * 109.47023 * 60.00496 * 15 14 13 17 17 C 1.52990 * 109.47456 * 184.99929 * 11 10 9 18 18 H 1.09007 * 109.47194 * 60.00597 * 17 11 10 19 19 N 1.46499 * 109.47333 * 300.00292 * 17 11 10 20 20 C 1.34784 * 119.99971 * 154.99849 * 19 17 11 21 21 O 1.21628 * 119.99757 * 359.72696 * 20 19 17 22 22 C 1.47207 * 119.99861 * 179.97438 * 20 19 17 23 23 C 1.37755 * 119.93834 * 179.72272 * 22 20 19 24 24 C 1.39858 * 119.92922 * 179.83447 * 23 22 20 25 25 C 1.36303 * 119.81959 * 0.41350 * 24 23 22 26 26 C 1.40773 * 119.70882 * 359.81066 * 25 24 23 27 27 N 1.32820 * 132.74038 * 180.02562 * 26 25 24 28 28 C 1.32376 * 109.73972 * 179.97438 * 27 26 25 29 29 N 1.31386 * 109.62076 * 359.97438 * 28 27 26 30 30 N 1.36549 * 119.87805 * 359.97438 * 26 25 24 31 31 H 0.97001 * 120.00227 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00076 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.47374 * 60.00232 * 10 9 7 34 34 H 1.08999 * 109.47558 * 300.00624 * 10 9 7 35 35 H 1.08991 * 109.47259 * 300.00025 * 13 11 10 36 36 H 1.08996 * 109.47029 * 60.00726 * 13 11 10 37 37 H 1.08996 * 109.47521 * 60.00405 * 14 13 11 38 38 H 1.08995 * 109.46954 * 180.02562 * 14 13 11 39 39 H 1.09007 * 109.46879 * 180.02562 * 15 14 13 40 40 H 1.08996 * 109.47625 * 300.00032 * 15 14 13 41 41 H 1.09005 * 109.47059 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47596 * 60.00227 * 16 15 14 43 43 H 0.96999 * 119.99984 * 334.99697 * 19 17 11 44 44 H 1.07997 * 120.03006 * 0.03226 * 23 22 20 45 45 H 1.07999 * 120.08932 * 180.22695 * 24 23 22 46 46 H 1.07992 * 120.14609 * 179.78708 * 25 24 23 47 47 H 1.08001 * 125.18959 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6567 0.0016 11 6 1.0638 -4.8197 0.0035 12 1 0.3807 -4.7122 0.8460 13 6 0.2675 -4.8120 -1.3030 14 6 -0.7271 -5.9746 -1.3008 15 6 0.0335 -7.2962 -1.1748 16 6 0.8297 -7.3038 0.1317 17 6 1.8248 -6.1410 0.1292 18 1 2.3920 -6.1465 1.0601 19 7 2.7430 -6.2854 -1.0031 20 6 3.8426 -7.0559 -0.8851 21 8 4.0750 -7.6273 0.1631 22 6 4.7649 -7.2015 -2.0231 23 6 5.8913 -7.9847 -1.8993 24 6 6.7657 -8.1256 -2.9817 25 6 6.5037 -7.4799 -4.1531 26 6 5.3518 -6.6786 -4.2656 27 7 4.8535 -5.9506 -5.2585 28 6 3.7292 -5.3714 -4.8678 29 7 3.4702 -5.7052 -3.6237 30 7 4.5041 -6.5531 -3.2025 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6854 -3.7142 0.8912 34 1 2.6841 -3.7149 -0.8888 35 1 -0.2746 -3.8707 -1.3925 36 1 0.9507 -4.9195 -2.1454 37 1 -1.4103 -5.8668 -0.4584 38 1 -1.2940 -5.9694 -2.2317 39 1 -0.6751 -8.1245 -1.1737 40 1 0.7166 -7.4041 -2.0173 41 1 1.3712 -8.2456 0.2216 42 1 0.1466 -7.1961 0.9742 43 1 2.5596 -5.8265 -1.8378 44 1 6.0973 -8.4919 -0.9683 45 1 7.6477 -8.7420 -2.8886 46 1 7.1771 -7.5823 -4.9912 47 1 3.1180 -4.7234 -5.4784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:34 Heat of formation + Delta-G solvation = 90.258913 kcal Electronic energy + Delta-G solvation = -30858.047640 eV Core-core repulsion = 26850.030488 eV Total energy + Delta-G solvation = -4008.017152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.01408 -40.40199 -38.68792 -37.53193 -34.65569 -34.35788 -33.34253 -31.90501 -31.28096 -30.40394 -29.81646 -29.37626 -25.56476 -24.93689 -23.78983 -23.22228 -22.92969 -22.02291 -21.19727 -20.52147 -19.04794 -18.37789 -17.96011 -17.19449 -16.85668 -16.61638 -16.12014 -15.75315 -15.35640 -14.86452 -14.65663 -14.51054 -14.33609 -14.01140 -13.64113 -13.32353 -13.25163 -13.05780 -13.05100 -12.76723 -12.46822 -12.10695 -11.99322 -11.96461 -11.67277 -11.54359 -11.40494 -10.88067 -10.87240 -10.70992 -10.56757 -10.32013 -10.21979 -10.14323 -9.97946 -9.92619 -9.85597 -9.61137 -9.01063 -8.84017 -8.63435 -6.89638 -5.74958 -3.03011 -0.13782 0.57395 1.63569 2.12838 2.74058 2.90633 3.15369 3.44960 3.49175 3.50313 3.59981 3.79258 4.35552 4.40583 4.50552 4.58683 4.81063 4.83720 4.89077 4.93150 5.00006 5.25408 5.32674 5.35076 5.52916 5.57900 5.62140 5.63303 5.68083 5.74485 5.76325 5.81610 5.88141 6.02125 6.09100 6.13457 6.16986 6.25138 6.26410 6.28038 6.38304 6.51373 6.54981 6.71019 6.81638 6.90412 7.45454 7.63986 7.71210 8.05026 8.44189 9.55419 10.13013 10.48567 11.47887 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009781 B = 0.003720 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.861146 B = 7525.427692 C = 8850.755958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.067 0.933 9 N -0.729 5.729 10 C 0.160 3.840 11 C -0.101 4.101 12 H 0.088 0.912 13 C -0.113 4.113 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.150 3.850 18 H 0.091 0.909 19 N -0.693 5.693 20 C 0.556 3.444 21 O -0.529 6.529 22 C 0.093 3.907 23 C -0.084 4.084 24 C -0.071 4.071 25 C -0.082 4.082 26 C 0.276 3.724 27 N -0.540 5.540 28 C 0.252 3.748 29 N -0.343 5.343 30 N -0.275 5.275 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.016 0.984 34 H 0.018 0.982 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.419 0.581 44 H 0.174 0.826 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.710 -21.254 -7.731 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.085 0.915 9 N -0.373 5.373 10 C 0.032 3.968 11 C -0.120 4.120 12 H 0.106 0.894 13 C -0.151 4.151 14 C -0.157 4.157 15 C -0.154 4.154 16 C -0.166 4.166 17 C 0.046 3.954 18 H 0.109 0.891 19 N -0.349 5.349 20 C 0.340 3.660 21 O -0.406 6.406 22 C -0.018 4.018 23 C -0.108 4.108 24 C -0.097 4.097 25 C -0.103 4.103 26 C 0.023 3.977 27 N -0.269 5.269 28 C -0.048 4.048 29 N -0.175 5.175 30 N -0.053 5.053 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.263 0.737 44 H 0.192 0.808 45 H 0.177 0.823 46 H 0.180 0.820 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.339 -21.073 -7.023 23.726 hybrid contribution 0.214 1.224 -0.410 1.309 sum 8.553 -19.849 -7.433 22.856 Atomic orbital electron populations 1.69641 1.05040 1.25699 1.57879 1.24700 0.95500 0.97550 1.03091 0.86289 0.78551 0.83655 0.77838 1.21345 1.21641 1.21313 1.19164 0.90924 0.84236 1.42581 0.91499 1.42327 1.05780 0.99802 1.89431 1.20634 0.93006 0.85419 0.97724 1.21624 0.97822 0.93149 0.99427 0.89398 1.21555 0.97746 0.98947 0.96805 1.21575 0.98016 0.94435 1.01691 1.21499 0.98644 0.97693 0.97586 1.21913 0.97898 0.98268 0.98521 1.21110 0.89820 0.95085 0.89411 0.89139 1.46505 1.22487 1.47299 1.18652 1.17508 0.81478 0.80774 0.86239 1.90837 1.74668 1.47824 1.27295 1.20703 0.98600 0.97749 0.84783 1.21508 0.90917 0.96873 1.01463 1.21272 0.99505 0.97690 0.91188 1.20541 0.94093 0.95549 1.00143 1.21865 0.93907 0.97761 0.84180 1.70868 1.12463 1.16225 1.27382 1.26234 0.92519 0.95960 0.90110 1.78077 1.08873 1.14480 1.16087 1.47935 1.17211 1.29902 1.10219 0.93502 0.78182 0.96584 0.96467 0.90202 0.92262 0.91818 0.92224 0.92371 0.92525 0.91739 0.90631 0.73681 0.80821 0.82260 0.82018 0.75273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.65 5.33 -59.91 -0.32 -18.96 16 10 C 0.16 3.35 5.42 -4.04 -0.02 3.33 16 11 C -0.10 -1.67 2.02 -90.62 -0.18 -1.85 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.11 -1.77 4.90 -26.73 -0.13 -1.90 16 14 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 15 C -0.12 -1.40 5.77 -26.73 -0.15 -1.55 16 16 C -0.13 -1.60 5.61 -26.71 -0.15 -1.75 16 17 C 0.15 2.21 2.23 -67.91 -0.15 2.06 16 18 H 0.09 1.42 7.57 -51.93 -0.39 1.03 16 19 N -0.69 -10.29 3.61 -54.93 -0.20 -10.49 16 20 C 0.56 8.10 7.74 -12.61 -0.10 8.00 16 21 O -0.53 -8.41 15.95 5.25 0.08 -8.33 16 22 C 0.09 1.14 6.80 -82.05 -0.56 0.59 16 23 C -0.08 -0.71 9.58 -39.15 -0.38 -1.09 16 24 C -0.07 -0.41 10.04 -39.67 -0.40 -0.81 16 25 C -0.08 -0.62 10.09 -39.32 -0.40 -1.01 16 26 C 0.28 3.25 7.88 -156.38 -1.23 2.02 16 27 N -0.54 -6.91 11.24 -13.99 -0.16 -7.06 16 28 C 0.25 3.09 12.98 -92.00 -1.19 1.90 16 29 N -0.34 -4.83 9.99 29.25 0.29 -4.54 16 30 N -0.28 -3.61 3.93 -8.82 -0.03 -3.64 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.38 7.61 -51.93 -0.40 -0.01 16 35 H 0.08 1.45 7.18 -51.93 -0.37 1.08 16 36 H 0.06 0.95 6.51 -51.93 -0.34 0.61 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 40 H 0.06 0.73 7.61 -51.93 -0.39 0.33 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.42 6.39 3.61 -40.82 -0.15 6.24 16 44 H 0.17 1.21 7.59 -52.49 -0.40 0.81 16 45 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 46 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.23 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -34.76 378.27 -10.87 -45.63 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.49 Total: 12.71 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -5.45 Total: -1.18 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: 0.31 Total: -72.29 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.76 -10.87 -45.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.889 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds