Wall clock time and date at job start Wed Apr 1 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99826 * 2 1 4 4 H 1.48502 * 109.46561 * 239.99650 * 3 2 1 5 5 H 1.48498 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47126 * 120.00076 * 3 2 1 7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00477 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99706 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00084 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47545 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46807 * 305.00455 * 11 10 9 13 13 C 1.53005 * 109.46659 * 64.99865 * 11 10 9 14 14 C 1.53001 * 109.46842 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46922 * 299.99944 * 14 13 11 16 16 C 1.53000 * 109.47023 * 60.00496 * 15 14 13 17 17 C 1.52990 * 109.47456 * 184.99929 * 11 10 9 18 18 H 1.09007 * 109.47194 * 60.00597 * 17 11 10 19 19 N 1.46499 * 109.47333 * 300.00292 * 17 11 10 20 20 C 1.34784 * 119.99971 * 154.99849 * 19 17 11 21 21 O 1.21628 * 119.99757 * 359.72696 * 20 19 17 22 22 C 1.47207 * 119.99861 * 179.97438 * 20 19 17 23 23 C 1.37755 * 119.93834 * 179.72272 * 22 20 19 24 24 C 1.39858 * 119.92922 * 179.83447 * 23 22 20 25 25 C 1.36303 * 119.81959 * 0.41350 * 24 23 22 26 26 C 1.40773 * 119.70882 * 359.81066 * 25 24 23 27 27 N 1.32820 * 132.74038 * 180.02562 * 26 25 24 28 28 C 1.32376 * 109.73972 * 179.97438 * 27 26 25 29 29 N 1.31386 * 109.62076 * 359.97438 * 28 27 26 30 30 N 1.36549 * 119.87805 * 359.97438 * 26 25 24 31 31 H 0.97001 * 120.00227 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00076 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.47374 * 60.00232 * 10 9 7 34 34 H 1.08999 * 109.47558 * 300.00624 * 10 9 7 35 35 H 1.08991 * 109.47259 * 300.00025 * 13 11 10 36 36 H 1.08996 * 109.47029 * 60.00726 * 13 11 10 37 37 H 1.08996 * 109.47521 * 60.00405 * 14 13 11 38 38 H 1.08995 * 109.46954 * 180.02562 * 14 13 11 39 39 H 1.09007 * 109.46879 * 180.02562 * 15 14 13 40 40 H 1.08996 * 109.47625 * 300.00032 * 15 14 13 41 41 H 1.09005 * 109.47059 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47596 * 60.00227 * 16 15 14 43 43 H 0.96999 * 119.99984 * 334.99697 * 19 17 11 44 44 H 1.07997 * 120.03006 * 0.03226 * 23 22 20 45 45 H 1.07999 * 120.08932 * 180.22695 * 24 23 22 46 46 H 1.07992 * 120.14609 * 179.78708 * 25 24 23 47 47 H 1.08001 * 125.18959 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6567 0.0016 11 6 1.0638 -4.8197 0.0035 12 1 0.3807 -4.7122 0.8460 13 6 0.2675 -4.8120 -1.3030 14 6 -0.7271 -5.9746 -1.3008 15 6 0.0335 -7.2962 -1.1748 16 6 0.8297 -7.3038 0.1317 17 6 1.8248 -6.1410 0.1292 18 1 2.3920 -6.1465 1.0601 19 7 2.7430 -6.2854 -1.0031 20 6 3.8426 -7.0559 -0.8851 21 8 4.0750 -7.6273 0.1631 22 6 4.7649 -7.2015 -2.0231 23 6 5.8913 -7.9847 -1.8993 24 6 6.7657 -8.1256 -2.9817 25 6 6.5037 -7.4799 -4.1531 26 6 5.3518 -6.6786 -4.2656 27 7 4.8535 -5.9506 -5.2585 28 6 3.7292 -5.3714 -4.8678 29 7 3.4702 -5.7052 -3.6237 30 7 4.5041 -6.5531 -3.2025 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6854 -3.7142 0.8912 34 1 2.6841 -3.7149 -0.8888 35 1 -0.2746 -3.8707 -1.3925 36 1 0.9507 -4.9195 -2.1454 37 1 -1.4103 -5.8668 -0.4584 38 1 -1.2940 -5.9694 -2.2317 39 1 -0.6751 -8.1245 -1.1737 40 1 0.7166 -7.4041 -2.0173 41 1 1.3712 -8.2456 0.2216 42 1 0.1466 -7.1961 0.9742 43 1 2.5596 -5.8265 -1.8378 44 1 6.0973 -8.4919 -0.9683 45 1 7.6477 -8.7420 -2.8886 46 1 7.1771 -7.5823 -4.9912 47 1 3.1180 -4.7234 -5.4784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754345015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:33 Heat of formation + Delta-G solvation = 69.523298 kcal Electronic energy + Delta-G solvation = -30858.946804 eV Core-core repulsion = 26850.030488 eV Total energy + Delta-G solvation = -4008.916315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.84714 -41.53888 -39.76666 -38.42638 -36.52867 -35.30271 -34.32610 -33.77064 -32.08419 -31.33761 -31.29742 -30.66028 -27.12778 -26.01089 -24.76458 -24.58442 -24.10858 -23.16983 -22.31209 -21.88861 -20.20983 -19.44299 -19.18685 -18.65135 -17.76416 -17.51566 -16.94471 -16.84233 -16.74247 -16.33854 -16.09833 -15.58109 -15.43638 -15.21472 -15.15778 -14.97683 -14.71070 -14.18150 -13.97282 -13.65104 -13.52531 -13.28619 -13.15708 -13.03675 -12.95497 -12.79630 -12.74301 -12.66468 -12.31531 -12.20620 -12.01084 -11.90588 -11.58321 -11.45369 -11.28630 -11.19655 -11.08047 -10.92233 -10.73995 -10.16101 -9.45364 -9.04768 -7.99234 -5.28341 -0.88759 -0.16039 0.83314 1.25490 1.42675 1.45589 1.52091 1.78898 1.90624 2.34793 2.51417 2.83059 2.98868 3.33118 3.47469 3.56454 3.69879 3.75091 3.78775 3.90346 4.00376 4.05101 4.14608 4.33331 4.36479 4.39894 4.40301 4.48738 4.55958 4.65890 4.76846 4.84268 4.91149 4.93509 4.98812 5.05744 5.07241 5.18012 5.19923 5.22026 5.24289 5.25510 5.35255 5.39975 5.43511 5.47477 5.52986 6.22442 6.34657 6.75431 6.93199 7.29503 8.02691 8.29823 9.23649 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009781 B = 0.003720 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.861146 B = 7525.427692 C = 8850.755958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.737 5.737 10 C 0.166 3.834 11 C -0.089 4.089 12 H 0.089 0.911 13 C -0.105 4.105 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.120 4.120 17 C 0.154 3.846 18 H 0.078 0.922 19 N -0.700 5.700 20 C 0.553 3.447 21 O -0.551 6.551 22 C 0.045 3.955 23 C -0.056 4.056 24 C -0.049 4.049 25 C -0.076 4.076 26 C 0.257 3.743 27 N -0.560 5.560 28 C 0.242 3.758 29 N -0.381 5.381 30 N -0.283 5.283 31 H 0.253 0.747 32 H 0.377 0.623 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.417 0.583 44 H 0.192 0.808 45 H 0.215 0.785 46 H 0.195 0.805 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.619 -23.246 -8.226 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.380 5.380 10 C 0.039 3.961 11 C -0.108 4.108 12 H 0.107 0.893 13 C -0.143 4.143 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.159 4.159 17 C 0.049 3.951 18 H 0.096 0.904 19 N -0.356 5.356 20 C 0.339 3.661 21 O -0.431 6.431 22 C -0.065 4.065 23 C -0.079 4.079 24 C -0.074 4.074 25 C -0.097 4.097 26 C 0.005 3.995 27 N -0.291 5.291 28 C -0.057 4.057 29 N -0.214 5.214 30 N -0.060 5.060 31 H 0.062 0.938 32 H 0.210 0.790 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.261 0.739 44 H 0.209 0.791 45 H 0.231 0.769 46 H 0.212 0.788 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 10.276 -23.097 -7.519 26.375 hybrid contribution -0.228 1.758 -0.261 1.791 sum 10.048 -21.340 -7.780 24.837 Atomic orbital electron populations 1.69789 1.06397 1.26285 1.58927 1.25500 0.96416 1.00805 1.03244 0.85257 0.77352 0.79343 0.78073 1.20629 1.21496 1.20521 1.19493 0.91116 0.85615 1.42157 0.91714 1.42451 1.05587 1.00656 1.89286 1.20655 0.93612 0.85456 0.96397 1.21481 0.96962 0.92408 0.99983 0.89325 1.21438 0.97899 0.99031 0.95931 1.21530 0.97346 0.93445 1.02695 1.21443 0.98657 0.97804 0.96739 1.21871 0.97517 0.96982 0.99497 1.21019 0.90161 0.94832 0.89116 0.90402 1.46572 1.22955 1.47666 1.18377 1.17862 0.81416 0.80049 0.86814 1.90802 1.75237 1.48771 1.28289 1.20718 1.00319 1.01119 0.84375 1.22027 0.89122 0.93914 1.02879 1.21849 0.99891 0.96623 0.89012 1.21142 0.92695 0.93924 1.01918 1.22621 0.94937 0.98336 0.83628 1.70841 1.12887 1.17156 1.28195 1.26720 0.92854 0.96124 0.90013 1.77962 1.10499 1.15965 1.17014 1.47879 1.17314 1.30083 1.10714 0.93778 0.78955 0.97657 0.97542 0.93058 0.93011 0.90976 0.91098 0.89976 0.93534 0.91604 0.89198 0.73894 0.79104 0.76854 0.78768 0.73169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.59 13.06 21.65 0.28 -59.31 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 8 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 9 N -0.74 -39.18 5.33 -343.46 -1.83 -41.01 16 10 C 0.17 7.29 5.42 86.38 0.47 7.75 16 11 C -0.09 -3.06 2.02 -10.80 -0.02 -3.08 16 12 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 13 C -0.11 -3.43 4.90 30.60 0.15 -3.28 16 14 C -0.11 -2.83 5.92 30.59 0.18 -2.64 16 15 C -0.11 -2.48 5.77 30.59 0.18 -2.31 16 16 C -0.12 -2.93 5.61 30.61 0.17 -2.76 16 17 C 0.15 4.63 2.23 45.00 0.10 4.73 16 18 H 0.08 2.53 7.57 -2.38 -0.02 2.51 16 19 N -0.70 -21.54 3.61 -445.94 -1.61 -23.15 16 20 C 0.55 16.39 7.74 86.60 0.67 17.06 16 21 O -0.55 -17.65 15.95 -4.12 -0.07 -17.71 16 22 C 0.05 1.09 6.80 40.56 0.28 1.37 16 23 C -0.06 -0.80 9.58 22.55 0.22 -0.59 16 24 C -0.05 -0.34 10.04 22.21 0.22 -0.12 16 25 C -0.08 -0.89 10.09 22.44 0.23 -0.66 16 26 C 0.26 5.82 7.88 134.16 1.06 6.88 16 27 N -0.56 -14.35 11.24 -198.17 -2.23 -16.58 16 28 C 0.24 6.21 12.98 180.83 2.35 8.56 16 29 N -0.38 -11.26 9.99 -61.38 -0.61 -11.87 16 30 N -0.28 -7.47 3.93 -181.80 -0.71 -8.18 16 31 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.38 20.85 6.85 -92.71 -0.63 20.22 16 33 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 34 H 0.01 0.31 7.61 -2.39 -0.02 0.29 16 35 H 0.05 1.96 7.18 -2.39 -0.02 1.94 16 36 H 0.05 1.76 6.51 -2.39 -0.02 1.74 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.05 1.17 7.61 -2.39 -0.02 1.15 16 41 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.42 13.38 3.61 -92.71 -0.33 13.05 16 44 H 0.19 2.05 7.59 -2.91 -0.02 2.02 16 45 H 0.21 -0.76 8.06 -2.91 -0.02 -0.78 16 46 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 47 H 0.25 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -78.73 378.27 2.84 -75.89 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: 0.04 Total: 39.06 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 7.55 Total: 13.52 kcal Atomic # 7 Polarization: -153.39 SS G_CDS: -6.71 Total: -160.11 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.07 Total: -17.71 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -78.73 2.84 -75.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.409 kcal (2) G-P(sol) polarization free energy of solvation -78.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds