Wall clock time and date at job start Wed Apr 1 2020 03:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 119.99699 * 2 1 4 4 H 1.48504 * 109.47267 * 269.99655 * 3 2 1 5 5 H 1.48497 * 109.47566 * 29.99968 * 3 2 1 6 6 H 1.48509 * 109.47347 * 149.99932 * 3 2 1 7 7 C 1.38813 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00214 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99890 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00021 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47042 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47559 * 305.00673 * 11 10 9 13 13 C 1.53006 * 109.47051 * 65.00591 * 11 10 9 14 14 C 1.52995 * 109.47051 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47146 * 299.99402 * 14 13 11 16 16 C 1.53006 * 109.46657 * 60.00356 * 15 14 13 17 17 C 1.52995 * 109.47051 * 299.99701 * 16 15 14 18 18 H 1.08999 * 109.47559 * 299.99918 * 17 16 15 19 19 N 1.46506 * 109.46824 * 180.02562 * 17 16 15 20 20 C 1.34777 * 119.99873 * 85.00531 * 19 17 16 21 21 O 1.21628 * 119.99665 * 359.97438 * 20 19 17 22 22 C 1.47206 * 119.99855 * 179.97438 * 20 19 17 23 23 C 1.37754 * 119.93533 * 179.72267 * 22 20 19 24 24 C 1.39864 * 119.92396 * 179.73070 * 23 22 20 25 25 C 1.36298 * 119.82593 * 0.54149 * 24 23 22 26 26 C 1.40779 * 119.70622 * 359.73409 * 25 24 23 27 27 N 1.32817 * 132.74953 * 180.02562 * 26 25 24 28 28 C 1.32370 * 109.74826 * 179.97438 * 27 26 25 29 29 N 1.31391 * 109.61311 * 0.02562 * 28 27 26 30 30 N 1.36552 * 119.87539 * 359.97438 * 26 25 24 31 31 H 0.96998 * 120.00254 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99456 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.46441 * 60.00766 * 10 9 7 34 34 H 1.08993 * 109.47111 * 300.00790 * 10 9 7 35 35 H 1.09003 * 109.46645 * 299.99926 * 13 11 10 36 36 H 1.08991 * 109.47008 * 59.99337 * 13 11 10 37 37 H 1.08999 * 109.47559 * 60.00082 * 14 13 11 38 38 H 1.09002 * 109.46959 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.47150 * 179.97438 * 15 14 13 40 40 H 1.08999 * 109.47446 * 300.00748 * 15 14 13 41 41 H 1.09003 * 109.46645 * 179.97438 * 16 15 14 42 42 H 1.09002 * 109.47370 * 60.00042 * 16 15 14 43 43 H 0.96995 * 120.00050 * 264.72646 * 19 17 16 44 44 H 1.07997 * 120.04027 * 359.97438 * 23 22 20 45 45 H 1.08001 * 120.08824 * 180.30020 * 24 23 22 46 46 H 1.07992 * 120.15220 * 179.70649 * 25 24 23 47 47 H 1.07999 * 125.19352 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 1 5.8659 -1.5452 -0.8417 13 6 6.0064 -1.4987 1.3075 14 6 7.5107 -1.2197 1.3078 15 6 8.2742 -2.5396 1.1823 16 6 7.8842 -3.2320 -0.1251 17 6 6.3799 -3.5111 -0.1254 18 1 6.1300 -4.1569 0.7163 19 7 6.0067 -4.1747 -1.3771 20 6 6.1239 -5.5124 -1.4915 21 8 6.5400 -6.1687 -0.5558 22 6 5.7483 -6.1793 -2.7490 23 6 5.8740 -7.5460 -2.8665 24 6 5.5117 -8.1800 -4.0594 25 6 5.0458 -7.4409 -5.1055 26 6 4.9274 -6.0442 -4.9750 27 7 4.5141 -5.0929 -5.8046 28 6 4.5901 -3.9143 -5.2071 29 7 5.0507 -4.0676 -3.9861 30 7 5.2789 -5.4384 -3.8027 31 1 -0.4850 0.8400 -0.0004 32 1 3.8645 -0.3620 -0.0004 33 1 3.8485 -3.0425 -0.8899 34 1 3.8491 -3.0422 0.8901 35 1 5.4620 -0.5586 1.3971 36 1 5.7568 -2.1446 2.1492 37 1 7.7606 -0.5738 0.4660 38 1 7.7884 -0.7259 2.2390 39 1 9.3460 -2.3407 1.1821 40 1 8.0243 -3.1854 2.0241 41 1 8.4286 -4.1721 -0.2147 42 1 8.1342 -2.5862 -0.9670 43 1 5.6714 -3.6517 -2.1220 44 1 6.2481 -8.1278 -2.0371 45 1 5.6047 -9.2519 -4.1528 46 1 4.7691 -7.9244 -6.0307 47 1 4.3155 -2.9706 -5.6548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:38 Heat of formation + Delta-G solvation = 91.561184 kcal Electronic energy + Delta-G solvation = -30519.097088 eV Core-core repulsion = 26511.136407 eV Total energy + Delta-G solvation = -4007.960681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.00217 -40.32250 -38.71113 -37.60524 -34.81337 -34.61241 -33.68112 -31.94919 -31.27032 -30.39475 -30.05336 -29.41681 -25.73882 -25.03686 -23.78314 -23.30665 -22.70943 -21.76412 -20.84028 -20.63796 -19.86565 -18.36607 -17.93236 -17.55661 -16.95388 -16.60119 -16.24873 -16.03315 -15.11931 -14.91723 -14.61079 -14.44673 -14.35659 -14.17477 -13.86643 -13.43499 -13.28699 -13.05939 -13.01352 -12.77772 -12.67432 -12.39628 -12.09209 -11.97014 -11.71412 -11.53862 -11.26782 -11.07486 -10.99605 -10.82107 -10.71257 -10.41187 -10.34355 -10.20479 -10.05949 -10.00646 -9.91365 -9.57370 -9.07921 -8.87457 -8.63635 -7.21555 -5.75760 -3.10975 -0.13913 0.58334 1.64398 2.12330 2.73539 2.84367 3.14409 3.36443 3.39044 3.44725 3.60558 3.78534 4.32091 4.40430 4.51373 4.59306 4.64422 4.77917 4.81417 4.92837 4.99997 5.10780 5.22773 5.32605 5.43391 5.50020 5.52113 5.54281 5.56053 5.60153 5.74438 5.75894 5.81587 5.87988 5.99978 6.03395 6.09672 6.12419 6.15313 6.23944 6.25992 6.40508 6.42608 6.50704 6.68754 6.78291 7.39411 7.64600 7.98501 8.00609 8.43061 9.22277 9.94455 10.14850 11.42891 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.003925 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.939855 B = 7132.810167 C = 9140.082879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.088 0.912 9 N -0.753 5.753 10 C 0.163 3.837 11 C -0.104 4.104 12 H 0.075 0.925 13 C -0.109 4.109 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.152 3.848 18 H 0.092 0.908 19 N -0.700 5.700 20 C 0.560 3.440 21 O -0.527 6.527 22 C 0.092 3.908 23 C -0.083 4.083 24 C -0.072 4.072 25 C -0.080 4.080 26 C 0.276 3.724 27 N -0.539 5.539 28 C 0.253 3.747 29 N -0.343 5.343 30 N -0.276 5.276 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.418 0.582 44 H 0.174 0.826 45 H 0.160 0.840 46 H 0.163 0.837 47 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.360 -14.672 -7.698 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.106 0.894 9 N -0.398 5.398 10 C 0.036 3.964 11 C -0.123 4.123 12 H 0.093 0.907 13 C -0.147 4.147 14 C -0.160 4.160 15 C -0.152 4.152 16 C -0.165 4.165 17 C 0.048 3.952 18 H 0.110 0.890 19 N -0.354 5.354 20 C 0.344 3.656 21 O -0.404 6.404 22 C -0.019 4.019 23 C -0.106 4.106 24 C -0.097 4.097 25 C -0.102 4.102 26 C 0.023 3.977 27 N -0.269 5.269 28 C -0.047 4.047 29 N -0.175 5.175 30 N -0.053 5.053 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.261 0.739 44 H 0.192 0.808 45 H 0.178 0.822 46 H 0.180 0.820 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 18.349 -14.441 -6.936 24.359 hybrid contribution 0.200 1.426 -0.432 1.503 sum 18.550 -13.015 -7.368 23.828 Atomic orbital electron populations 1.69702 1.05105 1.25759 1.57742 1.24653 0.95210 0.97118 1.02133 0.86556 0.79207 0.85040 0.77757 1.21111 1.21747 1.20320 1.19044 0.80656 0.94663 1.42773 0.89443 1.42680 1.03967 1.02063 1.91130 1.20627 0.87786 0.89345 0.98627 1.21642 0.96537 0.94954 0.99191 0.90651 1.21522 0.95001 1.01439 0.96698 1.21608 0.95609 0.97024 1.01759 1.21479 0.99543 0.96844 0.97302 1.21899 0.95349 1.00771 0.98460 1.21095 0.93979 0.93897 0.86263 0.88983 1.46460 1.63908 1.06639 1.18434 1.17483 0.79274 0.83116 0.85768 1.90841 1.46647 1.64842 1.38098 1.20649 1.02063 0.91514 0.87713 1.21506 0.98648 0.90518 0.99972 1.21269 0.95513 1.01672 0.91281 1.20549 1.00370 0.87677 1.01570 1.21867 0.97028 0.95673 0.83149 1.70862 1.27450 0.97937 1.30638 1.26234 0.92820 0.97974 0.87648 1.78055 1.30593 0.87870 1.21020 1.47932 1.39472 1.06970 1.10923 0.93094 0.80641 0.95597 0.95608 0.90735 0.91515 0.92058 0.91899 0.91964 0.91653 0.91616 0.91852 0.73891 0.80828 0.82245 0.81991 0.75238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.24 27.73 -169.99 -4.71 17.52 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -18.08 5.13 -59.91 -0.31 -18.39 16 10 C 0.16 3.28 5.56 -4.04 -0.02 3.25 16 11 C -0.10 -1.62 1.80 -90.62 -0.16 -1.78 16 12 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.11 -1.57 5.08 -26.73 -0.14 -1.71 16 14 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 15 C -0.11 -1.22 5.92 -26.73 -0.16 -1.38 16 16 C -0.13 -1.51 5.49 -26.73 -0.15 -1.66 16 17 C 0.15 2.14 1.90 -67.93 -0.13 2.01 16 18 H 0.09 1.40 7.57 -51.93 -0.39 1.01 16 19 N -0.70 -10.16 4.30 -54.95 -0.24 -10.40 16 20 C 0.56 7.99 7.74 -12.62 -0.10 7.89 16 21 O -0.53 -8.21 15.95 5.25 0.08 -8.13 16 22 C 0.09 1.12 6.80 -82.05 -0.56 0.56 16 23 C -0.08 -0.70 9.58 -39.15 -0.38 -1.07 16 24 C -0.07 -0.42 10.04 -39.67 -0.40 -0.81 16 25 C -0.08 -0.61 10.09 -39.32 -0.40 -1.01 16 26 C 0.28 3.30 7.88 -156.37 -1.23 2.07 16 27 N -0.54 -7.06 11.24 -13.99 -0.16 -7.22 16 28 C 0.25 3.19 12.98 -92.00 -1.19 1.99 16 29 N -0.34 -4.89 9.98 29.25 0.29 -4.60 16 30 N -0.28 -3.63 3.92 -8.81 -0.03 -3.67 16 31 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 32 H 0.36 8.38 4.71 -40.82 -0.19 8.18 16 33 H 0.03 0.55 7.30 -51.93 -0.38 0.17 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.42 6.31 5.33 -40.82 -0.22 6.10 16 44 H 0.17 1.19 7.59 -52.49 -0.40 0.79 16 45 H 0.16 0.28 8.06 -52.49 -0.42 -0.14 16 46 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.23 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -35.82 379.25 -10.62 -46.45 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.62 Total: 12.02 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -5.42 Total: -0.31 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: 0.33 Total: -73.26 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.08 Total: -8.13 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.82 -10.62 -46.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.007 kcal (2) G-P(sol) polarization free energy of solvation -35.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds