Wall clock time and date at job start Wed Apr 1 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 119.99699 * 2 1 4 4 H 1.48504 * 109.47267 * 269.99655 * 3 2 1 5 5 H 1.48497 * 109.47566 * 29.99968 * 3 2 1 6 6 H 1.48509 * 109.47347 * 149.99932 * 3 2 1 7 7 C 1.38813 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00214 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99890 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00021 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47042 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47559 * 305.00673 * 11 10 9 13 13 C 1.53006 * 109.47051 * 65.00591 * 11 10 9 14 14 C 1.52995 * 109.47051 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47146 * 299.99402 * 14 13 11 16 16 C 1.53006 * 109.46657 * 60.00356 * 15 14 13 17 17 C 1.52995 * 109.47051 * 299.99701 * 16 15 14 18 18 H 1.08999 * 109.47559 * 299.99918 * 17 16 15 19 19 N 1.46506 * 109.46824 * 180.02562 * 17 16 15 20 20 C 1.34777 * 119.99873 * 85.00531 * 19 17 16 21 21 O 1.21628 * 119.99665 * 359.97438 * 20 19 17 22 22 C 1.47206 * 119.99855 * 179.97438 * 20 19 17 23 23 C 1.37754 * 119.93533 * 179.72267 * 22 20 19 24 24 C 1.39864 * 119.92396 * 179.73070 * 23 22 20 25 25 C 1.36298 * 119.82593 * 0.54149 * 24 23 22 26 26 C 1.40779 * 119.70622 * 359.73409 * 25 24 23 27 27 N 1.32817 * 132.74953 * 180.02562 * 26 25 24 28 28 C 1.32370 * 109.74826 * 179.97438 * 27 26 25 29 29 N 1.31391 * 109.61311 * 0.02562 * 28 27 26 30 30 N 1.36552 * 119.87539 * 359.97438 * 26 25 24 31 31 H 0.96998 * 120.00254 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99456 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.46441 * 60.00766 * 10 9 7 34 34 H 1.08993 * 109.47111 * 300.00790 * 10 9 7 35 35 H 1.09003 * 109.46645 * 299.99926 * 13 11 10 36 36 H 1.08991 * 109.47008 * 59.99337 * 13 11 10 37 37 H 1.08999 * 109.47559 * 60.00082 * 14 13 11 38 38 H 1.09002 * 109.46959 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.47150 * 179.97438 * 15 14 13 40 40 H 1.08999 * 109.47446 * 300.00748 * 15 14 13 41 41 H 1.09003 * 109.46645 * 179.97438 * 16 15 14 42 42 H 1.09002 * 109.47370 * 60.00042 * 16 15 14 43 43 H 0.96995 * 120.00050 * 264.72646 * 19 17 16 44 44 H 1.07997 * 120.04027 * 359.97438 * 23 22 20 45 45 H 1.08001 * 120.08824 * 180.30020 * 24 23 22 46 46 H 1.07992 * 120.15220 * 179.70649 * 25 24 23 47 47 H 1.07999 * 125.19352 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 1 5.8659 -1.5452 -0.8417 13 6 6.0064 -1.4987 1.3075 14 6 7.5107 -1.2197 1.3078 15 6 8.2742 -2.5396 1.1823 16 6 7.8842 -3.2320 -0.1251 17 6 6.3799 -3.5111 -0.1254 18 1 6.1300 -4.1569 0.7163 19 7 6.0067 -4.1747 -1.3771 20 6 6.1239 -5.5124 -1.4915 21 8 6.5400 -6.1687 -0.5558 22 6 5.7483 -6.1793 -2.7490 23 6 5.8740 -7.5460 -2.8665 24 6 5.5117 -8.1800 -4.0594 25 6 5.0458 -7.4409 -5.1055 26 6 4.9274 -6.0442 -4.9750 27 7 4.5141 -5.0929 -5.8046 28 6 4.5901 -3.9143 -5.2071 29 7 5.0507 -4.0676 -3.9861 30 7 5.2789 -5.4384 -3.8027 31 1 -0.4850 0.8400 -0.0004 32 1 3.8645 -0.3620 -0.0004 33 1 3.8485 -3.0425 -0.8899 34 1 3.8491 -3.0422 0.8901 35 1 5.4620 -0.5586 1.3971 36 1 5.7568 -2.1446 2.1492 37 1 7.7606 -0.5738 0.4660 38 1 7.7884 -0.7259 2.2390 39 1 9.3460 -2.3407 1.1821 40 1 8.0243 -3.1854 2.0241 41 1 8.4286 -4.1721 -0.2147 42 1 8.1342 -2.5862 -0.9670 43 1 5.6714 -3.6517 -2.1220 44 1 6.2481 -8.1278 -2.0371 45 1 5.6047 -9.2519 -4.1528 46 1 4.7691 -7.9244 -6.0307 47 1 4.3155 -2.9706 -5.6548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754345016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:37 Heat of formation + Delta-G solvation = 68.832447 kcal Electronic energy + Delta-G solvation = -30520.082680 eV Core-core repulsion = 26511.136407 eV Total energy + Delta-G solvation = -4008.946273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.85122 -41.41789 -39.78116 -38.47605 -36.64919 -35.61739 -34.55743 -33.90303 -32.08828 -31.69358 -31.28251 -30.44942 -27.28263 -26.00783 -24.59548 -24.52235 -24.13196 -22.88816 -22.18647 -21.78105 -20.93815 -19.82783 -19.24313 -18.60696 -17.87749 -17.50522 -17.25867 -16.81040 -16.67225 -16.26305 -15.98666 -15.72550 -15.51663 -15.29189 -14.99491 -14.81120 -14.69604 -14.39669 -13.99239 -13.83442 -13.74855 -13.65288 -13.28221 -13.08133 -12.82360 -12.79490 -12.73301 -12.33523 -12.28384 -12.21572 -11.99650 -11.89232 -11.75120 -11.47323 -11.33959 -11.28037 -11.12297 -10.99343 -10.74401 -10.18899 -9.46622 -9.36043 -8.07385 -5.42055 -0.89837 -0.16847 0.82731 1.23842 1.33918 1.38567 1.45963 1.77146 1.86026 2.33758 2.44470 2.80795 2.97781 3.23453 3.32515 3.50242 3.65973 3.76156 3.78002 3.89591 3.91549 4.03766 4.16153 4.21671 4.32453 4.36054 4.36636 4.42093 4.47637 4.72962 4.76317 4.81198 4.92205 4.95700 4.98914 5.04163 5.05062 5.16577 5.19730 5.21004 5.22903 5.24718 5.33141 5.36429 5.47708 5.52977 5.67935 6.15654 6.29279 6.74616 6.88517 7.01957 7.75736 7.98637 9.14449 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.003925 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.939855 B = 7132.810167 C = 9140.082879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.060 4.060 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.248 1.248 7 C -0.240 4.240 8 H 0.046 0.954 9 N -0.749 5.749 10 C 0.167 3.833 11 C -0.090 4.090 12 H 0.078 0.922 13 C -0.108 4.108 14 C -0.115 4.115 15 C -0.109 4.109 16 C -0.117 4.117 17 C 0.155 3.845 18 H 0.077 0.923 19 N -0.707 5.707 20 C 0.556 3.444 21 O -0.549 6.549 22 C 0.045 3.955 23 C -0.056 4.056 24 C -0.049 4.049 25 C -0.076 4.076 26 C 0.257 3.743 27 N -0.562 5.562 28 C 0.243 3.757 29 N -0.381 5.381 30 N -0.283 5.283 31 H 0.259 0.741 32 H 0.368 0.632 33 H 0.011 0.989 34 H 0.013 0.987 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.415 0.585 44 H 0.193 0.807 45 H 0.215 0.785 46 H 0.195 0.805 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.266 -15.654 -8.216 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.252 4.252 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.172 1.172 7 C -0.371 4.371 8 H 0.064 0.936 9 N -0.396 5.396 10 C 0.040 3.960 11 C -0.110 4.110 12 H 0.097 0.903 13 C -0.146 4.146 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.156 4.156 17 C 0.051 3.949 18 H 0.095 0.905 19 N -0.361 5.361 20 C 0.342 3.658 21 O -0.428 6.428 22 C -0.066 4.066 23 C -0.079 4.079 24 C -0.074 4.074 25 C -0.097 4.097 26 C 0.004 3.996 27 N -0.292 5.292 28 C -0.057 4.057 29 N -0.214 5.214 30 N -0.060 5.060 31 H 0.068 0.932 32 H 0.202 0.798 33 H 0.029 0.971 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.258 0.742 44 H 0.210 0.790 45 H 0.232 0.768 46 H 0.212 0.788 47 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 21.303 -15.457 -7.450 27.354 hybrid contribution -0.784 1.476 -0.300 1.698 sum 20.519 -13.981 -7.750 26.011 Atomic orbital electron populations 1.69895 1.07274 1.26882 1.59325 1.25533 0.96145 1.01383 1.02109 0.85379 0.78794 0.79108 0.78337 1.20156 1.21930 1.17202 1.18956 0.82748 0.93260 1.42106 0.93614 1.42584 1.02328 1.03780 1.90870 1.20665 0.90781 0.87468 0.97091 1.21507 0.93043 0.96164 1.00259 0.90338 1.21515 0.97358 1.00193 0.95568 1.21567 0.92983 0.97720 1.02988 1.21477 1.00796 0.96127 0.96294 1.21833 0.93148 1.00983 0.99620 1.21043 0.95431 0.92546 0.85888 0.90451 1.46563 1.64164 1.07117 1.18301 1.17818 0.78637 0.82866 0.86489 1.90806 1.47879 1.65078 1.39070 1.20716 1.05877 0.92767 0.87237 1.22036 0.95471 0.88981 1.01394 1.21854 0.92709 1.03864 0.88973 1.21147 0.99323 0.85741 1.03468 1.22626 0.97091 0.97239 0.82626 1.70831 1.28600 0.98363 1.31413 1.26727 0.92565 0.98931 0.87449 1.77930 1.32145 0.89347 1.21993 1.47880 1.39950 1.06672 1.11519 0.93180 0.79754 0.97117 0.96935 0.92410 0.91853 0.91369 0.90210 0.89589 0.91653 0.91802 0.91339 0.74246 0.79015 0.76826 0.78793 0.73120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.61 13.97 21.65 0.30 -64.31 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 3 Si 0.96 46.03 27.73 68.60 1.90 47.93 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 7 C -0.24 -14.38 10.47 84.03 0.88 -13.50 16 8 H 0.05 3.06 8.06 -2.91 -0.02 3.03 16 9 N -0.75 -36.69 5.13 -343.46 -1.76 -38.45 16 10 C 0.17 6.95 5.56 86.38 0.48 7.43 16 11 C -0.09 -2.83 1.80 -10.79 -0.02 -2.85 16 12 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 13 C -0.11 -3.03 5.08 30.59 0.16 -2.88 16 14 C -0.12 -2.38 5.92 30.59 0.18 -2.20 16 15 C -0.11 -2.07 5.92 30.60 0.18 -1.89 16 16 C -0.12 -2.67 5.49 30.59 0.17 -2.50 16 17 C 0.16 4.43 1.90 44.99 0.09 4.51 16 18 H 0.08 2.42 7.57 -2.39 -0.02 2.41 16 19 N -0.71 -21.31 4.30 -446.01 -1.92 -23.23 16 20 C 0.56 16.27 7.74 86.60 0.67 16.94 16 21 O -0.55 -17.29 15.95 -4.12 -0.07 -17.35 16 22 C 0.04 1.08 6.80 40.56 0.28 1.36 16 23 C -0.06 -0.80 9.58 22.55 0.22 -0.59 16 24 C -0.05 -0.36 10.04 22.21 0.22 -0.14 16 25 C -0.08 -0.94 10.09 22.44 0.23 -0.71 16 26 C 0.26 5.99 7.88 134.16 1.06 7.05 16 27 N -0.56 -14.89 11.24 -198.17 -2.23 -17.12 16 28 C 0.24 6.41 12.98 180.83 2.35 8.76 16 29 N -0.38 -11.43 9.98 -61.38 -0.61 -12.04 16 30 N -0.28 -7.61 3.92 -181.80 -0.71 -8.32 16 31 H 0.26 16.12 8.31 -92.71 -0.77 15.34 16 32 H 0.37 16.85 4.71 -92.71 -0.44 16.42 16 33 H 0.01 0.49 7.30 -2.39 -0.02 0.47 16 34 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 1.81 7.18 -2.39 -0.02 1.80 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.42 13.18 5.33 -92.71 -0.49 12.69 16 44 H 0.19 2.05 7.59 -2.91 -0.02 2.03 16 45 H 0.21 -0.68 8.06 -2.91 -0.02 -0.71 16 46 H 0.19 1.10 8.06 -2.91 -0.02 1.07 16 47 H 0.25 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -83.07 379.25 2.52 -80.55 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.02 Total: 36.71 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 7.60 Total: 15.63 kcal Atomic # 7 Polarization: -156.54 SS G_CDS: -6.93 Total: -163.47 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.07 Total: -17.35 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.93 kcal Total: -83.07 2.52 -80.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.387 kcal (2) G-P(sol) polarization free energy of solvation -83.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds