Wall clock time and date at job start Wed Apr 1 2020 03:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46863 * 300.00279 * 3 2 1 6 6 H 1.48496 * 109.47075 * 59.99904 * 3 2 1 7 7 C 1.38810 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99524 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00520 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47408 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46862 * 55.00859 * 11 10 9 13 13 C 1.52997 * 109.47482 * 295.00294 * 11 10 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 11 16 16 C 1.53002 * 109.46891 * 299.99597 * 15 14 13 17 17 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 18 18 H 1.09001 * 109.47375 * 59.99908 * 17 16 15 19 19 N 1.46504 * 109.47417 * 179.97438 * 17 16 15 20 20 C 1.34774 * 119.99618 * 275.00242 * 19 17 16 21 21 O 1.21625 * 120.00295 * 359.97438 * 20 19 17 22 22 C 1.47213 * 120.00042 * 179.97438 * 20 19 17 23 23 C 1.37743 * 119.94152 * 179.72575 * 22 20 19 24 24 C 1.39864 * 119.92866 * 179.72913 * 23 22 20 25 25 C 1.36307 * 119.81992 * 0.54257 * 24 23 22 26 26 C 1.40766 * 119.70750 * 359.72781 * 25 24 23 27 27 N 1.32816 * 132.74679 * 180.02562 * 26 25 24 28 28 C 1.32375 * 109.74861 * 179.97438 * 27 26 25 29 29 N 1.31391 * 109.61726 * 359.97438 * 28 27 26 30 30 N 1.36559 * 119.87879 * 0.02562 * 26 25 24 31 31 H 0.96993 * 119.99899 * 359.97438 * 1 2 3 32 32 H 0.97008 * 119.99663 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47031 * 59.99926 * 10 9 7 34 34 H 1.09006 * 109.47249 * 300.00762 * 10 9 7 35 35 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 14 13 11 39 39 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 40 40 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47097 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47142 * 300.00176 * 16 15 14 43 43 H 0.96997 * 120.00148 * 94.99044 * 19 17 16 44 44 H 1.08003 * 120.03787 * 359.97347 * 23 22 20 45 45 H 1.08002 * 120.08967 * 180.25106 * 24 23 22 46 46 H 1.07993 * 120.14423 * 179.75294 * 25 24 23 47 47 H 1.08000 * 125.19560 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0640 -4.8196 -0.0008 12 1 0.3790 -4.7126 -0.8419 13 6 0.2706 -4.8115 1.3074 14 6 -0.7231 -5.9748 1.3085 15 6 0.0381 -7.2959 1.1820 16 6 0.8314 -7.3041 -0.1263 17 6 1.8251 -6.1409 -0.1274 18 1 2.5103 -6.2475 0.7136 19 7 2.5852 -6.1490 -1.3798 20 6 3.6850 -6.9194 -1.4956 21 8 4.0467 -7.6075 -0.5602 22 6 4.4485 -6.9281 -2.7542 23 6 5.5755 -7.7116 -2.8692 24 6 6.2975 -7.7240 -4.0671 25 6 5.8887 -6.9513 -5.1129 26 6 4.7385 -6.1506 -4.9809 27 7 4.1196 -5.3181 -5.8103 28 6 3.0612 -4.7949 -5.2116 29 7 2.9658 -5.2695 -3.9901 30 7 4.0398 -6.1516 -3.8076 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6855 -3.7149 0.8878 34 1 2.6842 -3.7141 -0.8921 35 1 -0.2713 -3.8701 1.3978 36 1 0.9557 -4.9185 2.1484 37 1 -1.2886 -5.9687 2.2403 38 1 -1.4083 -5.8682 0.4674 39 1 0.7231 -7.4026 2.0229 40 1 -0.6699 -8.1248 1.1832 41 1 1.3733 -8.2455 -0.2167 42 1 0.1462 -7.1975 -0.9674 43 1 2.2969 -5.6001 -2.1257 44 1 5.8991 -8.3188 -2.0367 45 1 7.1792 -8.3405 -4.1615 46 1 6.4445 -6.9538 -6.0388 47 1 2.3801 -4.0860 -5.6588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754345017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:42 Heat of formation + Delta-G solvation = 87.281875 kcal Electronic energy + Delta-G solvation = -30443.256048 eV Core-core repulsion = 26435.109802 eV Total energy + Delta-G solvation = -4008.146246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.98712 -40.25975 -38.62647 -37.56447 -34.61320 -34.56467 -33.63741 -31.88413 -31.25645 -30.36851 -29.66675 -29.21834 -25.55025 -24.92790 -23.76987 -23.26248 -22.95054 -21.78926 -20.75042 -20.57356 -19.74384 -18.33367 -17.82363 -17.24933 -16.82887 -16.58450 -16.16591 -16.00057 -15.08931 -14.82928 -14.64983 -14.42637 -14.27338 -13.94244 -13.75267 -13.32455 -13.24557 -13.05837 -13.03725 -12.75059 -12.53640 -12.33624 -11.96596 -11.82942 -11.56227 -11.51182 -11.13383 -10.89675 -10.87204 -10.72429 -10.65484 -10.33530 -10.22940 -10.14438 -9.99617 -9.91062 -9.89579 -9.63972 -9.00867 -8.84720 -8.61871 -6.89378 -5.75358 -3.03190 -0.12507 0.59522 1.65956 2.14338 2.75658 2.88840 3.16214 3.43594 3.49635 3.51590 3.61783 3.80714 4.34982 4.41603 4.52407 4.58111 4.80833 4.82749 4.90335 4.99251 5.06698 5.24143 5.33686 5.36197 5.53557 5.55954 5.59343 5.62874 5.66829 5.73522 5.76350 5.86622 5.90926 6.07171 6.12036 6.14613 6.18993 6.24400 6.27403 6.28428 6.39329 6.48655 6.56230 6.70680 6.81200 6.91096 7.44583 7.66264 7.72011 8.03321 8.43755 9.55195 10.12814 10.48350 11.47635 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008363 B = 0.003953 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.457280 B = 7082.177894 C = 9429.083103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.236 4.236 8 H 0.068 0.932 9 N -0.729 5.729 10 C 0.159 3.841 11 C -0.099 4.099 12 H 0.075 0.925 13 C -0.106 4.106 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.151 3.849 18 H 0.090 0.910 19 N -0.698 5.698 20 C 0.558 3.442 21 O -0.528 6.528 22 C 0.093 3.907 23 C -0.084 4.084 24 C -0.072 4.072 25 C -0.081 4.081 26 C 0.276 3.724 27 N -0.540 5.540 28 C 0.253 3.747 29 N -0.341 5.341 30 N -0.276 5.276 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.418 0.582 44 H 0.174 0.826 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.733 -20.435 -7.681 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.086 0.914 9 N -0.373 5.373 10 C 0.032 3.968 11 C -0.118 4.118 12 H 0.094 0.906 13 C -0.144 4.144 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.164 4.164 17 C 0.047 3.953 18 H 0.108 0.892 19 N -0.353 5.353 20 C 0.342 3.658 21 O -0.406 6.406 22 C -0.018 4.018 23 C -0.108 4.108 24 C -0.097 4.097 25 C -0.103 4.103 26 C 0.022 3.978 27 N -0.270 5.270 28 C -0.047 4.047 29 N -0.173 5.173 30 N -0.053 5.053 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.261 0.739 44 H 0.192 0.808 45 H 0.177 0.823 46 H 0.180 0.820 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.487 -20.353 -6.919 22.763 hybrid contribution 0.135 1.295 -0.444 1.375 sum 7.622 -19.058 -7.363 21.807 Atomic orbital electron populations 1.69665 1.05027 1.25443 1.58084 1.24700 0.95500 0.97540 1.03167 0.86149 0.78797 0.84276 0.77196 1.20672 1.21876 1.21853 1.19250 0.90974 0.84211 1.42247 0.91410 1.42337 1.05781 0.99811 1.89390 1.20647 0.93028 0.85420 0.97754 1.21582 0.97771 0.93165 0.99322 0.90618 1.21495 0.97657 0.98931 0.96339 1.21605 0.98098 0.94487 1.01757 1.21479 0.98759 0.97751 0.97176 1.21893 0.97853 0.98170 0.98532 1.21136 0.92803 0.95386 0.86011 0.89176 1.46478 1.26036 1.44325 1.18418 1.17492 0.81254 0.81299 0.85745 1.90837 1.69066 1.42482 1.38175 1.20678 0.97903 0.95547 0.87715 1.21500 0.91682 0.97624 0.99961 1.21269 0.99774 0.97419 0.91259 1.20539 0.93182 0.94944 1.01596 1.21866 0.95504 0.97258 0.83141 1.70863 1.10474 1.14998 1.30620 1.26249 0.94244 0.96585 0.87644 1.78092 1.06528 1.11700 1.21008 1.47954 1.18871 1.27594 1.10920 0.93619 0.78202 0.96488 0.96471 0.90095 0.91976 0.91975 0.91988 0.91797 0.92059 0.91783 0.91844 0.73884 0.80841 0.82273 0.82023 0.75214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.61 5.33 -59.91 -0.32 -18.93 16 10 C 0.16 3.34 5.56 -4.05 -0.02 3.32 16 11 C -0.10 -1.65 1.80 -90.62 -0.16 -1.81 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.11 -1.66 5.08 -26.73 -0.14 -1.79 16 14 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 15 C -0.11 -1.32 5.92 -26.73 -0.16 -1.47 16 16 C -0.13 -1.61 5.49 -26.73 -0.15 -1.76 16 17 C 0.15 2.25 1.90 -67.93 -0.13 2.12 16 18 H 0.09 1.44 7.57 -51.93 -0.39 1.05 16 19 N -0.70 -10.57 4.30 -54.94 -0.24 -10.81 16 20 C 0.56 8.20 7.74 -12.62 -0.10 8.11 16 21 O -0.53 -8.45 15.95 5.26 0.08 -8.36 16 22 C 0.09 1.16 6.80 -82.05 -0.56 0.60 16 23 C -0.08 -0.72 9.58 -39.15 -0.38 -1.10 16 24 C -0.07 -0.42 10.04 -39.67 -0.40 -0.82 16 25 C -0.08 -0.63 10.09 -39.32 -0.40 -1.02 16 26 C 0.28 3.33 7.88 -156.37 -1.23 2.09 16 27 N -0.54 -7.12 11.24 -13.99 -0.16 -7.27 16 28 C 0.25 3.23 12.98 -92.00 -1.19 2.04 16 29 N -0.34 -4.97 9.98 29.25 0.29 -4.68 16 30 N -0.28 -3.70 3.93 -8.82 -0.03 -3.73 16 31 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.38 7.31 -51.93 -0.38 0.00 16 35 H 0.08 1.46 7.18 -51.93 -0.37 1.09 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.42 6.59 5.34 -40.82 -0.22 6.37 16 44 H 0.17 1.22 7.59 -52.48 -0.40 0.82 16 45 H 0.16 0.29 8.06 -52.49 -0.42 -0.13 16 46 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 47 H 0.23 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -34.72 382.38 -10.98 -45.70 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.66 Total: 12.66 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -5.41 Total: -0.56 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: 0.27 Total: -72.96 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.72 -10.98 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.986 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds