Wall clock time and date at job start Wed Apr 1 2020 03:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46863 * 300.00279 * 3 2 1 6 6 H 1.48496 * 109.47075 * 59.99904 * 3 2 1 7 7 C 1.38810 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99524 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00520 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47408 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46862 * 55.00859 * 11 10 9 13 13 C 1.52997 * 109.47482 * 295.00294 * 11 10 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 11 16 16 C 1.53002 * 109.46891 * 299.99597 * 15 14 13 17 17 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 18 18 H 1.09001 * 109.47375 * 59.99908 * 17 16 15 19 19 N 1.46504 * 109.47417 * 179.97438 * 17 16 15 20 20 C 1.34774 * 119.99618 * 275.00242 * 19 17 16 21 21 O 1.21625 * 120.00295 * 359.97438 * 20 19 17 22 22 C 1.47213 * 120.00042 * 179.97438 * 20 19 17 23 23 C 1.37743 * 119.94152 * 179.72575 * 22 20 19 24 24 C 1.39864 * 119.92866 * 179.72913 * 23 22 20 25 25 C 1.36307 * 119.81992 * 0.54257 * 24 23 22 26 26 C 1.40766 * 119.70750 * 359.72781 * 25 24 23 27 27 N 1.32816 * 132.74679 * 180.02562 * 26 25 24 28 28 C 1.32375 * 109.74861 * 179.97438 * 27 26 25 29 29 N 1.31391 * 109.61726 * 359.97438 * 28 27 26 30 30 N 1.36559 * 119.87879 * 0.02562 * 26 25 24 31 31 H 0.96993 * 119.99899 * 359.97438 * 1 2 3 32 32 H 0.97008 * 119.99663 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47031 * 59.99926 * 10 9 7 34 34 H 1.09006 * 109.47249 * 300.00762 * 10 9 7 35 35 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 14 13 11 39 39 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 40 40 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47097 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47142 * 300.00176 * 16 15 14 43 43 H 0.96997 * 120.00148 * 94.99044 * 19 17 16 44 44 H 1.08003 * 120.03787 * 359.97347 * 23 22 20 45 45 H 1.08002 * 120.08967 * 180.25106 * 24 23 22 46 46 H 1.07993 * 120.14423 * 179.75294 * 25 24 23 47 47 H 1.08000 * 125.19560 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0640 -4.8196 -0.0008 12 1 0.3790 -4.7126 -0.8419 13 6 0.2706 -4.8115 1.3074 14 6 -0.7231 -5.9748 1.3085 15 6 0.0381 -7.2959 1.1820 16 6 0.8314 -7.3041 -0.1263 17 6 1.8251 -6.1409 -0.1274 18 1 2.5103 -6.2475 0.7136 19 7 2.5852 -6.1490 -1.3798 20 6 3.6850 -6.9194 -1.4956 21 8 4.0467 -7.6075 -0.5602 22 6 4.4485 -6.9281 -2.7542 23 6 5.5755 -7.7116 -2.8692 24 6 6.2975 -7.7240 -4.0671 25 6 5.8887 -6.9513 -5.1129 26 6 4.7385 -6.1506 -4.9809 27 7 4.1196 -5.3181 -5.8103 28 6 3.0612 -4.7949 -5.2116 29 7 2.9658 -5.2695 -3.9901 30 7 4.0398 -6.1516 -3.8076 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6855 -3.7149 0.8878 34 1 2.6842 -3.7141 -0.8921 35 1 -0.2713 -3.8701 1.3978 36 1 0.9557 -4.9185 2.1484 37 1 -1.2886 -5.9687 2.2403 38 1 -1.4083 -5.8682 0.4674 39 1 0.7231 -7.4026 2.0229 40 1 -0.6699 -8.1248 1.1832 41 1 1.3733 -8.2455 -0.2167 42 1 0.1462 -7.1975 -0.9674 43 1 2.2969 -5.6001 -2.1257 44 1 5.8991 -8.3188 -2.0367 45 1 7.1792 -8.3405 -4.1615 46 1 6.4445 -6.9538 -6.0388 47 1 2.3801 -4.0860 -5.6588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754345017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:41 Heat of formation + Delta-G solvation = 66.180225 kcal Electronic energy + Delta-G solvation = -30444.171084 eV Core-core repulsion = 26435.109802 eV Total energy + Delta-G solvation = -4009.061282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.84768 -41.40201 -39.74700 -38.46490 -36.49315 -35.60862 -34.55080 -33.74658 -32.08549 -31.29318 -31.27092 -30.40660 -27.12603 -26.00499 -24.79783 -24.58995 -24.15597 -22.91761 -22.07229 -21.77098 -20.91517 -19.41163 -19.18319 -18.56922 -17.84683 -17.50246 -17.23820 -16.80253 -16.76040 -16.10564 -16.00688 -15.59753 -15.39222 -15.30341 -15.14993 -14.86974 -14.66261 -14.18211 -13.97684 -13.80029 -13.64650 -13.39267 -13.25310 -13.00475 -12.81951 -12.78763 -12.72866 -12.33196 -12.28536 -12.14188 -11.99815 -11.91733 -11.74142 -11.46393 -11.32411 -11.25348 -11.10863 -10.95610 -10.74389 -10.17750 -9.46105 -9.04639 -7.99624 -5.28513 -0.89385 -0.16255 0.83250 1.24186 1.42596 1.43256 1.53320 1.77633 1.86518 2.34144 2.50866 2.81153 2.98033 3.33102 3.44923 3.52440 3.69845 3.76955 3.85900 3.90311 4.02031 4.05920 4.18242 4.30145 4.34706 4.37789 4.41471 4.44232 4.49777 4.74733 4.77310 4.82744 4.92653 4.96786 5.01961 5.05769 5.05966 5.17896 5.20842 5.22304 5.23952 5.25402 5.36164 5.39382 5.42282 5.48903 5.54196 6.22251 6.30479 6.74865 6.88863 7.29282 8.02239 8.29299 9.23718 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008363 B = 0.003953 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.457280 B = 7082.177894 C = 9429.083103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.248 4.248 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.165 3.835 11 C -0.085 4.085 12 H 0.068 0.932 13 C -0.103 4.103 14 C -0.115 4.115 15 C -0.108 4.108 16 C -0.118 4.118 17 C 0.157 3.843 18 H 0.078 0.922 19 N -0.707 5.707 20 C 0.556 3.444 21 O -0.549 6.549 22 C 0.045 3.955 23 C -0.055 4.055 24 C -0.048 4.048 25 C -0.075 4.075 26 C 0.257 3.743 27 N -0.561 5.561 28 C 0.243 3.757 29 N -0.382 5.382 30 N -0.283 5.283 31 H 0.253 0.747 32 H 0.377 0.623 33 H 0.008 0.992 34 H 0.006 0.994 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.415 0.585 44 H 0.193 0.807 45 H 0.215 0.785 46 H 0.195 0.805 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.736 -22.484 -8.251 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.379 5.379 10 C 0.038 3.962 11 C -0.104 4.104 12 H 0.086 0.914 13 C -0.141 4.141 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.156 4.156 17 C 0.052 3.948 18 H 0.096 0.904 19 N -0.361 5.361 20 C 0.342 3.658 21 O -0.429 6.429 22 C -0.066 4.066 23 C -0.078 4.078 24 C -0.073 4.073 25 C -0.096 4.096 26 C 0.004 3.996 27 N -0.291 5.291 28 C -0.057 4.057 29 N -0.215 5.215 30 N -0.060 5.060 31 H 0.062 0.938 32 H 0.210 0.790 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.257 0.743 44 H 0.210 0.790 45 H 0.232 0.768 46 H 0.213 0.787 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 9.519 -22.435 -7.487 25.495 hybrid contribution -0.337 1.845 -0.299 1.899 sum 9.181 -20.590 -7.786 23.851 Atomic orbital electron populations 1.69807 1.06388 1.26099 1.59130 1.25489 0.96404 1.00760 1.03340 0.85124 0.77958 0.79962 0.77003 1.19710 1.21642 1.21545 1.19551 0.91092 0.85568 1.41803 0.91716 1.42455 1.05558 1.00665 1.89241 1.20672 0.93620 0.85422 0.96503 1.21418 0.96778 0.92492 0.99758 0.91354 1.21433 0.98001 0.99151 0.95502 1.21555 0.97364 0.93569 1.02727 1.21468 0.98983 0.97761 0.96346 1.21833 0.97339 0.96928 0.99520 1.21034 0.92878 0.95007 0.85873 0.90364 1.46572 1.26637 1.44719 1.18161 1.17835 0.80902 0.80556 0.86552 1.90802 1.69577 1.43329 1.39162 1.20713 1.00044 0.98654 0.87160 1.22036 0.89443 0.94890 1.01459 1.21859 1.00203 0.96377 0.88904 1.21148 0.91478 0.93499 1.03511 1.22636 0.96590 0.97779 0.82561 1.70833 1.10974 1.15985 1.31342 1.26715 0.94697 0.96842 0.87420 1.77972 1.08246 1.13209 1.22064 1.47893 1.18872 1.27734 1.11549 0.93813 0.79023 0.97364 0.97568 0.92935 0.92068 0.90358 0.91824 0.91489 0.89539 0.91601 0.91638 0.74296 0.78998 0.76775 0.78741 0.73218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.63 13.06 21.65 0.28 -59.35 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 8 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.74 -39.20 5.33 -343.46 -1.83 -41.03 16 10 C 0.16 7.26 5.56 86.38 0.48 7.74 16 11 C -0.09 -2.96 1.80 -10.79 -0.02 -2.98 16 12 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 13 C -0.10 -3.30 5.08 30.59 0.16 -3.14 16 14 C -0.11 -2.79 5.92 30.59 0.18 -2.61 16 15 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 16 C -0.12 -2.94 5.49 30.59 0.17 -2.77 16 17 C 0.16 4.79 1.90 44.99 0.09 4.87 16 18 H 0.08 2.58 7.57 -2.39 -0.02 2.56 16 19 N -0.71 -22.33 4.30 -445.99 -1.92 -24.25 16 20 C 0.56 16.64 7.74 86.60 0.67 17.31 16 21 O -0.55 -17.59 15.95 -4.11 -0.07 -17.66 16 22 C 0.04 1.10 6.80 40.56 0.28 1.38 16 23 C -0.06 -0.79 9.58 22.55 0.22 -0.58 16 24 C -0.05 -0.34 10.04 22.21 0.22 -0.12 16 25 C -0.08 -0.91 10.09 22.44 0.23 -0.68 16 26 C 0.26 5.98 7.88 134.16 1.06 7.04 16 27 N -0.56 -14.88 11.24 -198.17 -2.23 -17.11 16 28 C 0.24 6.52 12.98 180.83 2.35 8.87 16 29 N -0.38 -11.75 9.98 -61.38 -0.61 -12.36 16 30 N -0.28 -7.69 3.93 -181.81 -0.71 -8.41 16 31 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.38 20.92 6.85 -92.70 -0.64 20.29 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.01 0.30 7.31 -2.38 -0.02 0.28 16 35 H 0.05 1.98 7.18 -2.39 -0.02 1.96 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.41 13.89 5.34 -92.71 -0.50 13.40 16 44 H 0.19 2.04 7.59 -2.91 -0.02 2.02 16 45 H 0.22 -0.76 8.06 -2.91 -0.02 -0.78 16 46 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.25 4.94 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -78.91 382.38 2.38 -76.53 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.12 Total: 39.19 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 7.55 Total: 14.99 kcal Atomic # 7 Polarization: -155.49 SS G_CDS: -7.02 Total: -162.51 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.07 Total: -17.66 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -78.91 2.38 -76.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.710 kcal (2) G-P(sol) polarization free energy of solvation -78.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds