Wall clock time and date at job start Wed Apr 1 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00163 * 2 1 4 4 H 1.48507 * 109.47030 * 239.99477 * 3 2 1 5 5 H 1.48495 * 109.47464 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47308 * 120.00168 * 3 2 1 7 7 C 1.38813 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99950 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00408 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00458 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47484 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47153 * 55.00066 * 11 10 9 13 13 C 1.53002 * 109.46817 * 295.00296 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.47060 * 175.00385 * 11 10 9 18 18 H 1.09001 * 109.47194 * 299.99650 * 17 11 10 19 19 N 1.46496 * 109.47631 * 59.99933 * 17 11 10 20 20 C 1.34773 * 120.00380 * 205.00251 * 19 17 11 21 21 O 1.21626 * 119.99678 * 359.97438 * 20 19 17 22 22 C 1.47206 * 119.99936 * 180.02562 * 20 19 17 23 23 C 1.37756 * 119.93338 * 179.72562 * 22 20 19 24 24 C 1.39863 * 119.92514 * 179.73007 * 23 22 20 25 25 C 1.36298 * 119.82127 * 0.54037 * 24 23 22 26 26 C 1.40777 * 119.70760 * 359.73005 * 25 24 23 27 27 N 1.32820 * 132.74327 * 180.02562 * 26 25 24 28 28 C 1.32371 * 109.74487 * 180.02562 * 27 26 25 29 29 N 1.31390 * 109.61355 * 359.97438 * 28 27 26 30 30 N 1.36551 * 119.87889 * 0.02562 * 26 25 24 31 31 H 0.97002 * 119.99299 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99958 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46667 * 60.00304 * 10 9 7 34 34 H 1.09008 * 109.47241 * 300.00661 * 10 9 7 35 35 H 1.09002 * 109.47075 * 299.99262 * 13 11 10 36 36 H 1.08996 * 109.47407 * 60.00219 * 13 11 10 37 37 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 39 39 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 40 40 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.47067 * 299.99853 * 16 15 14 43 43 H 0.97004 * 119.99423 * 24.99756 * 19 17 11 44 44 H 1.07997 * 120.04113 * 359.97438 * 23 22 20 45 45 H 1.08002 * 120.09425 * 180.26762 * 24 23 22 46 46 H 1.07999 * 120.14918 * 179.75191 * 25 24 23 47 47 H 1.07999 * 125.19065 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0636 -4.8197 0.0022 12 1 0.3792 -4.7130 -0.8393 13 6 0.2693 -4.8108 1.3099 14 6 -0.7245 -5.9741 1.3108 15 6 0.0366 -7.2954 1.1854 16 6 0.8310 -7.3042 -0.1223 17 6 1.8244 -6.1412 -0.1234 18 1 2.3903 -6.1476 -1.0550 19 7 2.7443 -6.2847 1.0077 20 6 3.8436 -7.0553 0.8888 21 8 4.0717 -7.6320 -0.1575 22 6 4.7676 -7.1998 2.0256 23 6 5.8878 -7.9923 1.9044 24 6 6.7686 -8.1250 2.9827 25 6 6.5087 -7.4778 4.1538 26 6 5.3576 -6.6754 4.2669 27 7 4.8616 -5.9452 5.2593 28 6 3.7370 -5.3659 4.8696 29 7 3.4762 -5.7010 3.6262 30 7 4.5085 -6.5504 3.2048 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6852 -3.7142 0.8912 34 1 2.6840 -3.7150 -0.8888 35 1 0.9538 -4.9176 2.1515 36 1 -0.2726 -3.8694 1.3994 37 1 -1.2901 -5.9680 2.2426 38 1 -1.4090 -5.8678 0.4692 39 1 0.7211 -7.4017 2.0270 40 1 -0.6714 -8.1241 1.1865 41 1 1.3728 -8.2457 -0.2118 42 1 0.1465 -7.1979 -0.9639 43 1 2.5621 -5.8250 1.8422 44 1 6.0879 -8.5074 0.9765 45 1 7.6500 -8.7422 2.8893 46 1 7.1831 -7.5797 4.9911 47 1 3.1270 -4.7169 5.4804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754345018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:45 Heat of formation + Delta-G solvation = 69.558740 kcal Electronic energy + Delta-G solvation = -30859.947003 eV Core-core repulsion = 26851.032225 eV Total energy + Delta-G solvation = -4008.914779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.84819 -41.54254 -39.76744 -38.42625 -36.52962 -35.30284 -34.32622 -33.77073 -32.08347 -31.33963 -31.29731 -30.66128 -27.12782 -26.01030 -24.76513 -24.58482 -24.10826 -23.17005 -22.31269 -21.88944 -20.20899 -19.44298 -19.18688 -18.65163 -17.76439 -17.51604 -16.94570 -16.84198 -16.74214 -16.33934 -16.09781 -15.58164 -15.43630 -15.21489 -15.15780 -14.97808 -14.71078 -14.18005 -13.97246 -13.65071 -13.52711 -13.28620 -13.15773 -13.03606 -12.95505 -12.79581 -12.74227 -12.66497 -12.31568 -12.20577 -12.01072 -11.90570 -11.58286 -11.45265 -11.28699 -11.19636 -11.07952 -10.92205 -10.73932 -10.16198 -9.45373 -9.04769 -7.99280 -5.28323 -0.88710 -0.16045 0.83372 1.25555 1.42686 1.45577 1.52103 1.79048 1.90546 2.34802 2.51435 2.83064 2.98870 3.33090 3.47383 3.56433 3.69983 3.75101 3.78784 3.90347 4.00370 4.05100 4.14568 4.33354 4.36512 4.39896 4.40300 4.48777 4.55921 4.65910 4.76854 4.84283 4.91123 4.93510 4.98818 5.05789 5.07280 5.18055 5.19925 5.22003 5.24291 5.25522 5.35243 5.39966 5.43502 5.47465 5.52974 6.22451 6.34685 6.75470 6.93213 7.29480 8.02669 8.29808 9.23620 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.003720 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.272594 B = 7526.036790 C = 8852.283130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.166 3.834 11 C -0.089 4.089 12 H 0.089 0.911 13 C -0.105 4.105 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.120 4.120 17 C 0.154 3.846 18 H 0.078 0.922 19 N -0.700 5.700 20 C 0.553 3.447 21 O -0.551 6.551 22 C 0.045 3.955 23 C -0.056 4.056 24 C -0.049 4.049 25 C -0.076 4.076 26 C 0.257 3.743 27 N -0.560 5.560 28 C 0.242 3.758 29 N -0.381 5.381 30 N -0.283 5.283 31 H 0.253 0.747 32 H 0.377 0.623 33 H 0.007 0.993 34 H 0.005 0.995 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.417 0.583 44 H 0.192 0.808 45 H 0.215 0.785 46 H 0.195 0.805 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -23.248 8.245 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.380 5.380 10 C 0.039 3.961 11 C -0.108 4.108 12 H 0.107 0.893 13 C -0.143 4.143 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.159 4.159 17 C 0.049 3.951 18 H 0.096 0.904 19 N -0.356 5.356 20 C 0.339 3.661 21 O -0.431 6.431 22 C -0.065 4.065 23 C -0.079 4.079 24 C -0.074 4.074 25 C -0.097 4.097 26 C 0.005 3.995 27 N -0.291 5.291 28 C -0.057 4.057 29 N -0.214 5.214 30 N -0.060 5.060 31 H 0.062 0.938 32 H 0.210 0.790 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.261 0.739 44 H 0.209 0.791 45 H 0.231 0.769 46 H 0.212 0.788 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 10.281 -23.102 7.540 26.387 hybrid contribution -0.225 1.761 0.257 1.794 sum 10.057 -21.341 7.797 24.847 Atomic orbital electron populations 1.69797 1.06395 1.26274 1.58935 1.25504 0.96421 1.00809 1.03251 0.85254 0.77347 0.79333 0.78072 1.20532 1.21498 1.20622 1.19493 0.91115 0.85616 1.42145 0.91716 1.42451 1.05588 1.00657 1.89283 1.20655 0.93613 0.85454 0.96399 1.21482 0.96968 0.92405 0.99978 0.89325 1.21440 0.97914 0.99025 0.95919 1.21532 0.97352 0.93440 1.02693 1.21442 0.98660 0.97806 0.96729 1.21854 0.97541 0.96983 0.99492 1.21003 0.90132 0.94834 0.89145 0.90407 1.46574 1.22885 1.47686 1.18430 1.17858 0.81412 0.80079 0.86795 1.90802 1.75354 1.48540 1.28405 1.20718 1.00429 1.00963 0.84426 1.22028 0.89212 0.93837 1.02859 1.21850 0.99839 0.96649 0.89044 1.21143 0.92721 0.93938 1.01879 1.22623 0.94907 0.98329 0.83669 1.70837 1.12936 1.17093 1.28214 1.26719 0.92823 0.96139 0.90028 1.77959 1.10564 1.15907 1.17017 1.47874 1.17323 1.30065 1.10718 0.93784 0.78956 0.97532 0.97660 0.93017 0.93049 0.91096 0.90977 0.93536 0.89977 0.91597 0.89207 0.73894 0.79100 0.76854 0.78767 0.73169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.60 13.06 21.65 0.28 -59.31 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 7 C -0.25 -14.77 9.99 84.03 0.84 -13.93 16 8 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 9 N -0.74 -39.17 5.33 -343.46 -1.83 -41.00 16 10 C 0.17 7.28 5.42 86.38 0.47 7.75 16 11 C -0.09 -3.06 2.02 -10.79 -0.02 -3.08 16 12 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 13 C -0.11 -3.43 4.91 30.60 0.15 -3.28 16 14 C -0.11 -2.83 5.92 30.60 0.18 -2.64 16 15 C -0.11 -2.48 5.77 30.59 0.18 -2.31 16 16 C -0.12 -2.93 5.60 30.58 0.17 -2.76 16 17 C 0.15 4.64 2.23 44.98 0.10 4.74 16 18 H 0.08 2.53 7.58 -2.39 -0.02 2.51 16 19 N -0.70 -21.54 3.60 -446.10 -1.61 -23.15 16 20 C 0.55 16.39 7.74 86.60 0.67 17.06 16 21 O -0.55 -17.64 15.95 -4.11 -0.07 -17.71 16 22 C 0.05 1.09 6.80 40.57 0.28 1.37 16 23 C -0.06 -0.80 9.58 22.55 0.22 -0.58 16 24 C -0.05 -0.34 10.04 22.21 0.22 -0.12 16 25 C -0.08 -0.89 10.09 22.44 0.23 -0.66 16 26 C 0.26 5.82 7.88 134.16 1.06 6.88 16 27 N -0.56 -14.35 11.24 -198.17 -2.23 -16.58 16 28 C 0.24 6.21 12.98 180.83 2.35 8.56 16 29 N -0.38 -11.26 9.98 -61.38 -0.61 -11.87 16 30 N -0.28 -7.47 3.92 -181.80 -0.71 -8.18 16 31 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.38 20.85 6.85 -92.70 -0.64 20.21 16 33 H 0.01 0.31 7.61 -2.39 -0.02 0.30 16 34 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 35 H 0.05 1.75 6.51 -2.39 -0.02 1.74 16 36 H 0.05 1.96 7.18 -2.39 -0.02 1.94 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.17 7.60 -2.39 -0.02 1.15 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.42 13.38 3.61 -92.70 -0.33 13.04 16 44 H 0.19 2.04 7.59 -2.91 -0.02 2.02 16 45 H 0.21 -0.76 8.06 -2.91 -0.02 -0.79 16 46 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 47 H 0.25 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -78.72 378.26 2.84 -75.88 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: 0.04 Total: 39.05 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 7.55 Total: 13.51 kcal Atomic # 7 Polarization: -153.39 SS G_CDS: -6.71 Total: -160.10 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.07 Total: -17.71 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -78.72 2.84 -75.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754345018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.436 kcal (2) G-P(sol) polarization free energy of solvation -78.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds