Wall clock time and date at job start Wed Apr 1 2020 02:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38308 * 119.96178 * 2 1 4 4 C 1.38262 * 120.13945 * 180.25194 * 3 2 1 5 5 C 1.38135 * 120.06875 * 359.50084 * 4 3 2 6 6 C 1.50704 * 120.03368 * 180.25226 * 5 4 3 7 7 C 1.38850 * 119.93035 * 0.47904 * 5 4 3 8 8 N 1.39926 * 120.07079 * 179.74917 * 7 5 4 9 9 C 1.34775 * 119.99900 * 145.30268 * 8 7 5 10 10 O 1.21287 * 119.99948 * 4.49853 * 9 8 7 11 11 C 1.50703 * 120.00170 * 184.48651 * 9 8 7 12 12 H 1.09006 * 109.46646 * 60.00466 * 11 9 8 13 13 C 1.53002 * 109.47117 * 300.00691 * 11 9 8 14 14 N 1.46502 * 109.47207 * 180.02562 * 11 9 8 15 15 C 1.35310 * 125.87011 * 85.00521 * 14 11 9 16 16 C 1.35347 * 106.17586 * 179.97438 * 15 14 11 17 17 C 1.50704 * 126.75156 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.47009 * 95.00454 * 17 16 15 19 19 C 1.36938 * 120.00139 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99568 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00024 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00069 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99973 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47377 * 89.99735 * 23 21 19 25 25 H 1.48496 * 109.46928 * 210.00289 * 23 21 19 26 26 H 1.48504 * 109.46542 * 329.99753 * 23 21 19 27 27 N 1.33769 * 106.49753 * 0.02562 * 16 15 14 28 28 N 1.28641 * 108.88748 * 359.72996 * 27 16 15 29 29 C 1.38089 * 119.96677 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47513 * 89.99907 * 1 2 3 31 31 H 1.09003 * 109.46887 * 209.99911 * 1 2 3 32 32 H 1.09004 * 109.47405 * 329.99322 * 1 2 3 33 33 H 1.08000 * 119.93051 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.96468 * 179.74537 * 4 3 2 35 35 H 1.08997 * 109.46669 * 270.22656 * 6 5 4 36 36 H 1.08995 * 109.47449 * 30.22740 * 6 5 4 37 37 H 1.09001 * 109.46754 * 150.22893 * 6 5 4 38 38 H 0.96996 * 120.00468 * 325.31151 * 8 7 5 39 39 H 1.08993 * 109.47229 * 299.99714 * 13 11 9 40 40 H 1.09000 * 109.47271 * 59.99899 * 13 11 9 41 41 H 1.09001 * 109.47032 * 179.97438 * 13 11 9 42 42 H 1.07996 * 126.90893 * 359.97122 * 15 14 11 43 43 H 1.09007 * 109.46896 * 215.00384 * 17 16 15 44 44 H 1.08997 * 109.47093 * 335.00374 * 17 16 15 45 45 H 0.97006 * 119.99561 * 359.97438 * 18 17 16 46 46 H 0.96999 * 120.00274 * 179.97438 * 22 21 19 47 47 H 1.07997 * 120.03621 * 359.97190 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2025 -0.0053 5 6 4.2762 0.0093 -0.0001 6 6 5.7832 0.0149 -0.0001 7 6 3.5857 -1.1954 0.0003 8 7 4.2876 -2.4058 0.0002 9 6 3.7957 -3.4701 0.6649 10 8 2.7066 -3.4038 1.1946 11 6 4.5987 -4.7425 0.7499 12 1 5.5492 -4.5399 1.2437 13 6 4.8601 -5.2758 -0.6601 14 7 3.8516 -5.7411 1.5186 15 6 2.9074 -6.5763 1.0269 16 6 2.4825 -7.3227 2.0730 17 6 1.4325 -8.4032 2.0422 18 7 2.0787 -9.7075 1.8770 19 6 1.3193 -10.8457 1.8209 20 1 0.2440 -10.7817 1.8989 21 6 1.9316 -12.0815 1.6638 22 7 3.2420 -12.1593 1.5682 23 14 0.8957 -13.6340 1.5865 24 1 0.5285 -13.9145 0.1752 25 1 1.6732 -14.7755 2.1320 26 1 -0.3383 -13.4461 2.3910 27 7 3.1780 -6.9126 3.1395 28 7 3.9845 -5.9783 2.7767 29 6 2.1967 -1.1963 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6560 2.1325 -0.0004 34 1 4.1168 2.1398 -0.0094 35 1 6.1465 0.0159 -1.0278 36 1 6.1432 0.9063 0.5134 37 1 6.1498 -0.8736 0.5140 38 1 5.1282 -2.4790 -0.4781 39 1 3.9097 -5.4783 -1.1539 40 1 5.4158 -4.5329 -1.2324 41 1 5.4413 -6.1958 -0.5987 42 1 2.5622 -6.6354 0.0053 43 1 0.8715 -8.3914 2.9768 44 1 0.7531 -8.2260 1.2085 45 1 3.0445 -9.7648 1.8066 46 1 3.6699 -13.0229 1.4588 47 1 1.6568 -2.1316 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603185708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:59 Heat of formation + Delta-G solvation = 107.100877 kcal Electronic energy + Delta-G solvation = -29000.174465 eV Core-core repulsion = 24992.887636 eV Total energy + Delta-G solvation = -4007.286829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.02058 -41.16127 -39.22953 -35.72957 -35.66928 -34.60950 -33.75288 -31.98107 -31.06405 -29.91349 -29.84084 -29.54808 -26.19794 -25.47156 -25.11790 -23.73826 -22.76884 -22.12183 -21.15344 -20.81357 -20.37410 -18.37437 -17.64141 -17.22036 -16.65027 -16.28635 -15.98028 -15.78178 -15.14369 -14.83925 -14.59739 -14.49614 -14.28360 -14.06258 -13.66478 -13.65123 -13.43886 -13.29994 -13.11295 -13.08776 -12.97471 -12.60271 -12.39551 -12.31501 -12.09294 -11.85629 -11.77194 -11.59465 -11.21199 -10.88409 -10.77633 -10.74899 -10.48953 -10.37351 -10.05420 -9.80095 -9.66062 -8.93958 -8.84263 -8.76050 -8.48636 -6.87380 -5.70365 -2.99510 0.83582 1.03020 1.68728 1.99041 2.14791 2.67180 2.99517 3.36224 3.48159 3.53338 3.55644 3.83512 4.03690 4.26033 4.38106 4.42973 4.64927 4.66701 4.71373 4.75779 4.86394 4.91076 5.03500 5.06906 5.10858 5.22014 5.32171 5.32451 5.35759 5.42731 5.47912 5.55524 5.58106 5.68232 5.77382 5.86264 5.89223 5.98784 6.09910 6.22444 6.30144 6.46535 6.65454 6.68046 6.72989 6.82076 6.85901 7.49781 7.75146 8.47084 8.88573 9.58853 10.14899 10.51367 11.52504 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.002070 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.947615 B =13523.102353 C =14255.256475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.130 4.130 4 C -0.100 4.100 5 C -0.116 4.116 6 C -0.115 4.115 7 C 0.146 3.854 8 N -0.666 5.666 9 C 0.505 3.495 10 O -0.490 6.490 11 C 0.134 3.866 12 H 0.141 0.859 13 C -0.165 4.165 14 N -0.288 5.288 15 C -0.029 4.029 16 C -0.003 4.003 17 C 0.233 3.767 18 N -0.726 5.726 19 C -0.237 4.237 20 H 0.073 0.927 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.247 5.247 28 N -0.090 5.090 29 C -0.116 4.116 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.412 0.588 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.185 0.815 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.385 0.615 46 H 0.254 0.746 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 31.094 -10.427 33.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.149 4.149 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.172 4.172 7 C 0.053 3.947 8 N -0.313 5.313 9 C 0.289 3.711 10 O -0.361 6.361 11 C 0.027 3.973 12 H 0.158 0.842 13 C -0.224 4.224 14 N -0.082 5.082 15 C -0.179 4.179 16 C -0.140 4.140 17 C 0.104 3.896 18 N -0.370 5.370 19 C -0.368 4.368 20 H 0.091 0.909 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.115 5.115 28 N -0.068 5.068 29 C -0.136 4.136 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.249 0.751 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.235 31.333 -8.693 32.935 hybrid contribution -0.140 -1.053 -1.333 1.704 sum 5.095 30.280 -10.026 32.301 Atomic orbital electron populations 1.20807 0.90829 1.03148 1.02440 1.19840 0.96362 0.92529 0.98636 1.21038 0.94126 0.97594 1.02116 1.20817 0.94030 0.96881 1.00144 1.19667 0.96114 0.91735 1.04361 1.20741 0.90884 1.03226 1.02341 1.17488 0.91200 0.84182 1.01868 1.43328 1.26075 1.09607 1.52271 1.20757 0.87239 0.84756 0.78339 1.90824 1.19826 1.81940 1.43558 1.21297 0.95561 0.85315 0.95153 0.84193 1.22230 1.04739 1.03910 0.91473 1.46699 1.27845 1.25645 1.07994 1.23206 0.96371 0.96232 1.02105 1.22401 1.01897 1.00914 0.88792 1.18947 0.89522 0.81947 0.99200 1.42310 1.06676 0.99785 1.88274 1.19243 0.90790 0.84873 1.41920 0.90889 1.24755 0.95690 0.97612 1.02995 1.69682 1.07529 1.23922 1.57016 0.86151 0.79110 0.83194 0.77512 1.21783 1.21830 1.20673 1.75074 1.04747 1.06083 1.25565 1.78269 1.20624 1.14695 0.93259 1.21187 0.92354 0.99144 1.00910 0.91016 0.91177 0.91401 0.85919 0.85619 0.91022 0.90956 0.91741 0.75118 0.90082 0.89230 0.88923 0.79752 0.94247 0.94462 0.78120 0.93575 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.07 -0.68 5.88 -104.65 -0.62 -1.29 16 3 C -0.13 -1.02 9.70 -39.55 -0.38 -1.40 16 4 C -0.10 -0.72 9.70 -39.61 -0.38 -1.10 16 5 C -0.12 -0.87 5.90 -104.43 -0.62 -1.49 16 6 C -0.12 -0.53 9.47 36.01 0.34 -0.19 16 7 C 0.15 1.34 6.29 -83.69 -0.53 0.82 16 8 N -0.67 -4.88 4.67 -9.86 -0.05 -4.93 16 9 C 0.50 5.28 7.07 -10.98 -0.08 5.20 16 10 O -0.49 -7.43 13.83 5.55 0.08 -7.36 16 11 C 0.13 1.26 3.66 -69.08 -0.25 1.00 16 12 H 0.14 0.99 8.14 -51.93 -0.42 0.56 16 13 C -0.17 -0.99 8.72 37.16 0.32 -0.67 16 14 N -0.29 -4.35 2.75 -55.89 -0.15 -4.50 16 15 C -0.03 -0.48 10.60 -17.05 -0.18 -0.66 16 16 C 0.00 -0.06 6.61 -82.78 -0.55 -0.61 16 17 C 0.23 5.14 6.82 -5.19 -0.04 5.11 16 18 N -0.73 -19.41 5.59 -61.08 -0.34 -19.75 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 23 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 27 N -0.25 -5.36 12.41 33.29 0.41 -4.95 16 28 N -0.09 -1.71 13.17 60.35 0.79 -0.91 16 29 C -0.12 -1.25 8.35 -39.39 -0.33 -1.58 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 37 H 0.06 0.27 7.17 -51.93 -0.37 -0.10 16 38 H 0.41 1.47 7.15 -40.82 -0.29 1.18 16 39 H 0.08 0.53 7.17 -51.93 -0.37 0.16 16 40 H 0.09 0.21 7.47 -51.93 -0.39 -0.18 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.19 2.41 7.30 -52.49 -0.38 2.03 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.39 11.02 7.66 -40.82 -0.31 10.71 16 46 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.14 1.73 6.20 -52.49 -0.33 1.40 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -38.58 396.10 -7.39 -45.97 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.63 Total: 5.76 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.17 Total: -4.85 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: 1.39 Total: -63.26 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.08 Total: -7.36 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.58 -7.39 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603185708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.072 kcal (2) G-P(sol) polarization free energy of solvation -38.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds