Wall clock time and date at job start Wed Apr 1 2020 01:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48505 * 109.46715 * 239.99765 * 3 2 1 5 5 H 1.48501 * 109.47021 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47458 * 119.99671 * 3 2 1 7 7 C 1.38810 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99680 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00473 * 0.02562 * 7 2 1 10 10 C 1.47865 * 126.94282 * 359.97438 * 9 7 2 11 11 C 1.55484 * 105.17381 * 181.92686 * 10 9 7 12 12 H 1.08999 * 116.04305 * 159.75564 * 11 10 9 13 13 C 1.57434 * 99.68412 * 32.85889 * 11 10 9 14 14 C 1.49291 * 126.94834 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.15430 * 15.83559 * 14 9 7 16 16 C 1.56021 * 104.09172 * 246.69523 * 14 9 7 17 17 N 1.47870 * 105.10203 * 288.76743 * 16 14 9 18 18 C 1.34773 * 126.94117 * 181.98286 * 17 16 14 19 19 O 1.21284 * 120.00180 * 180.02562 * 18 17 16 20 20 C 1.50702 * 120.00131 * 0.02562 * 18 17 16 21 21 H 1.08996 * 110.72745 * 38.35899 * 20 18 17 22 22 C 1.54941 * 110.66630 * 275.26433 * 20 18 17 23 23 C 1.54601 * 102.91778 * 204.15166 * 22 20 18 24 24 C 1.53992 * 105.14273 * 21.95862 * 23 22 20 25 25 N 1.47907 * 107.05784 * 1.22335 * 24 23 22 26 26 C 1.38398 * 110.99947 * 214.15693 * 25 24 23 27 27 N 1.32501 * 119.21725 * 240.12638 * 26 25 24 28 28 C 1.32272 * 120.74110 * 180.26714 * 27 26 25 29 29 C 1.38605 * 119.19705 * 359.48581 * 28 27 26 30 30 C 1.38607 * 118.56029 * 0.25336 * 29 28 27 31 31 N 1.32280 * 119.19188 * 0.02562 * 30 29 28 32 32 H 0.96999 * 120.00450 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.31475 * 300.90780 * 10 9 7 34 34 H 1.09001 * 110.31614 * 63.09696 * 10 9 7 35 35 H 1.09005 * 112.53575 * 191.71148 * 13 11 10 36 36 H 1.08996 * 112.31690 * 64.17374 * 13 11 10 37 37 H 1.08996 * 110.31870 * 169.85292 * 16 14 9 38 38 H 1.09007 * 110.31500 * 47.66966 * 16 14 9 39 39 H 1.08990 * 110.72533 * 85.79639 * 22 20 18 40 40 H 1.09003 * 110.87842 * 322.57746 * 22 20 18 41 41 H 1.09004 * 110.31053 * 263.03814 * 23 22 20 42 42 H 1.09003 * 110.30351 * 140.87386 * 23 22 20 43 43 H 1.08998 * 109.91969 * 241.87318 * 24 23 22 44 44 H 1.09002 * 110.07910 * 120.66964 * 24 23 22 45 45 H 1.08002 * 120.40454 * 179.76837 * 28 27 26 46 46 H 1.08002 * 120.72513 * 180.27558 * 29 28 27 47 47 H 1.08001 * 120.40449 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1423 -2.5668 0.0005 11 6 -0.3649 -4.1048 0.0510 12 1 -1.3442 -4.4355 0.3971 13 6 0.8839 -4.5251 0.9126 14 6 1.9101 -3.7617 0.0016 15 1 2.9642 -3.8351 0.2694 16 6 1.5091 -4.3463 -1.3882 17 7 0.0523 -4.5840 -1.3004 18 6 -0.7397 -5.1198 -2.2501 19 8 -1.9268 -5.2578 -2.0430 20 6 -0.1504 -5.5475 -3.5696 21 1 0.8315 -5.9982 -3.4255 22 6 -0.0631 -4.3465 -4.5445 23 6 -0.0631 -5.0273 -5.9325 24 6 -0.6977 -6.4112 -5.7017 25 7 -1.0615 -6.4885 -4.2702 26 6 -0.9095 -7.7771 -3.7887 27 7 -1.9630 -8.4116 -3.2956 28 6 -1.8510 -9.6418 -2.8226 29 6 -0.6158 -10.2697 -2.8572 30 6 0.4640 -9.5790 -3.3846 31 7 0.2848 -8.3486 -3.8360 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5814 -2.0914 0.8776 34 1 -0.5739 -2.1535 -0.9110 35 1 1.0491 -5.6025 0.9110 36 1 0.8450 -4.1189 1.9233 37 1 2.0352 -5.2833 -1.5708 38 1 1.7284 -3.6281 -2.1784 39 1 0.8605 -3.7892 -4.3882 40 1 -0.9291 -3.6936 -4.4351 41 1 0.9571 -5.1355 -6.3008 42 1 -0.6612 -4.4495 -6.6372 43 1 0.0204 -7.1943 -5.9451 44 1 -1.5899 -6.5212 -6.3181 45 1 -2.7125 -10.1526 -2.4184 46 1 -0.4972 -11.2754 -2.4818 47 1 1.4399 -10.0398 -3.4266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032456708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:12 Heat of formation + Delta-G solvation = 112.358502 kcal Electronic energy + Delta-G solvation = -31240.276252 eV Core-core repulsion = 27233.217411 eV Total energy + Delta-G solvation = -4007.058842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.47700 -40.10283 -38.88118 -37.07169 -33.86171 -33.62139 -33.15797 -31.59652 -29.93984 -29.72928 -28.71891 -28.36633 -25.19995 -24.80147 -24.27544 -23.56394 -22.24132 -21.15183 -20.27504 -19.81035 -18.53224 -17.96299 -17.71856 -17.12881 -16.38744 -16.07001 -15.66209 -15.29836 -15.01831 -14.91819 -14.50200 -14.13568 -13.95609 -13.77604 -13.61553 -13.23957 -13.07106 -12.78147 -12.37951 -12.13261 -11.85400 -11.67413 -11.61421 -11.47731 -11.27638 -11.15540 -11.02813 -10.96717 -10.85412 -10.75543 -10.66290 -10.58554 -10.25144 -10.08573 -9.70741 -9.64716 -9.62552 -9.26145 -8.72268 -8.59438 -7.93192 -6.92111 -5.75707 -3.10610 0.62413 0.93471 2.90553 3.10960 3.37637 3.41904 3.44192 3.50057 3.54787 3.97516 4.38088 4.42127 4.46122 4.61442 4.67539 4.82821 4.88335 4.93779 4.97279 5.14177 5.19765 5.21262 5.35677 5.38647 5.49168 5.57148 5.62150 5.64518 5.70753 5.78432 5.80408 5.93284 5.96386 5.98109 6.11892 6.19870 6.29765 6.41392 6.43718 6.55044 6.60352 6.60832 6.74258 7.07809 7.43268 7.51629 7.72897 7.99741 8.10146 8.16149 8.72151 9.10767 9.71683 10.41149 11.36117 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.003280 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.410305 B = 8534.516176 C = 9198.652048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.596 5.596 10 C 0.175 3.825 11 C 0.101 3.899 12 H 0.112 0.888 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.106 0.894 16 C 0.084 3.916 17 N -0.608 5.608 18 C 0.531 3.469 19 O -0.523 6.523 20 C 0.065 3.935 21 H 0.087 0.913 22 C -0.107 4.107 23 C -0.124 4.124 24 C 0.049 3.951 25 N -0.437 5.437 26 C 0.486 3.514 27 N -0.477 5.477 28 C 0.155 3.845 29 C -0.239 4.239 30 C 0.156 3.844 31 N -0.546 5.546 32 H 0.255 0.745 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.171 0.829 46 H 0.148 0.852 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 -19.727 -8.206 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.002 4.002 12 H 0.130 0.870 13 C -0.190 4.190 14 C 0.033 3.967 15 H 0.123 0.877 16 C -0.042 4.042 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.398 6.398 20 C -0.046 4.046 21 H 0.105 0.895 22 C -0.146 4.146 23 C -0.162 4.162 24 C -0.077 4.077 25 N -0.162 5.162 26 C 0.131 3.869 27 N -0.192 5.192 28 C -0.012 4.012 29 C -0.261 4.261 30 C -0.012 4.012 31 N -0.265 5.265 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.188 0.812 46 H 0.166 0.834 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.142 -18.460 -8.457 20.337 hybrid contribution 1.362 -0.300 0.205 1.409 sum 2.504 -18.760 -8.252 20.647 Atomic orbital electron populations 1.69908 1.04926 1.25434 1.56187 1.24812 0.95663 0.97669 1.02002 0.86205 0.78444 0.83232 0.77861 1.21169 1.21629 1.21146 1.18987 0.90341 0.82082 1.44698 0.90248 1.45229 1.01343 0.99209 1.86275 1.21817 0.84635 0.87242 1.01336 1.24286 0.97583 0.97634 0.80661 0.87039 1.24182 0.96895 0.98682 0.99221 1.23149 0.96450 0.86377 0.90770 0.87650 1.23302 0.80107 0.98592 1.02187 1.49198 1.09246 1.60473 1.15395 1.19653 0.86359 0.78243 0.83977 1.90704 1.14750 1.54857 1.79532 1.22754 0.94529 0.93786 0.93507 0.89490 1.22412 1.04183 0.95709 0.92296 1.22386 1.01313 0.94809 0.97702 1.22914 1.00295 0.98270 0.86258 1.61696 1.50802 1.00021 1.03672 1.21244 0.83797 0.91435 0.90431 1.68171 1.33085 1.08557 1.09358 1.23309 0.97337 0.89465 0.91131 1.22907 0.95565 1.03349 1.04257 1.23069 0.99335 0.89015 0.89763 1.68481 1.26418 1.12488 1.19092 0.93517 0.92663 0.93408 0.91935 0.89791 0.93294 0.91069 0.89385 0.89573 0.90624 0.90061 0.92233 0.89513 0.81206 0.83391 0.81590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.71 10.56 55.49 0.59 -26.12 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.16 10.37 -15.06 -0.16 -6.32 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.60 -14.32 3.02 -156.71 -0.47 -14.79 16 10 C 0.17 4.24 4.75 -1.97 -0.01 4.23 16 11 C 0.10 2.04 5.23 -62.62 -0.33 1.71 16 12 H 0.11 2.24 8.05 -51.93 -0.42 1.83 16 13 C -0.15 -2.63 6.82 -22.13 -0.15 -2.78 16 14 C 0.14 2.65 5.52 -62.58 -0.35 2.30 16 15 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 16 C 0.08 1.46 5.80 -1.67 -0.01 1.45 16 17 N -0.61 -11.78 2.95 -156.85 -0.46 -12.24 16 18 C 0.53 10.60 7.00 -10.99 -0.08 10.52 16 19 O -0.52 -12.26 16.95 5.55 0.09 -12.17 16 20 C 0.07 1.05 2.10 -66.93 -0.14 0.91 16 21 H 0.09 1.36 6.86 -51.93 -0.36 1.00 16 22 C -0.11 -1.53 6.49 -24.87 -0.16 -1.69 16 23 C -0.12 -1.36 6.93 -25.37 -0.18 -1.54 16 24 C 0.05 0.61 6.58 -2.75 -0.02 0.60 16 25 N -0.44 -7.01 4.67 -165.29 -0.77 -7.78 16 26 C 0.49 7.55 6.19 -322.82 -2.00 5.55 16 27 N -0.48 -7.43 10.47 -13.93 -0.15 -7.57 16 28 C 0.16 1.68 11.30 -17.23 -0.19 1.48 16 29 C -0.24 -1.99 10.16 -39.31 -0.40 -2.39 16 30 C 0.16 1.50 11.30 -17.22 -0.19 1.31 16 31 N -0.55 -7.23 8.78 -13.93 -0.12 -7.36 16 32 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.06 1.48 7.46 -51.93 -0.39 1.09 16 34 H 0.05 1.33 7.68 -51.93 -0.40 0.94 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.05 0.73 7.96 -51.93 -0.41 0.32 16 38 H 0.07 1.33 8.06 -51.92 -0.42 0.91 16 39 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 40 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.70 7.20 -51.93 -0.37 0.33 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -35.21 378.87 -12.02 -47.23 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.95 Total: 3.39 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: -4.45 Total: 15.13 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -1.39 Total: -75.86 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.21 -12.02 -47.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032456708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.592 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds