Wall clock time and date at job start Wed Apr 1 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48505 * 109.46715 * 239.99765 * 3 2 1 5 5 H 1.48501 * 109.47021 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47458 * 119.99671 * 3 2 1 7 7 C 1.38810 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99680 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00473 * 0.02562 * 7 2 1 10 10 C 1.47865 * 126.94282 * 359.97438 * 9 7 2 11 11 C 1.55484 * 105.17381 * 181.92686 * 10 9 7 12 12 H 1.08999 * 116.04305 * 159.75564 * 11 10 9 13 13 C 1.57434 * 99.68412 * 32.85889 * 11 10 9 14 14 C 1.49291 * 126.94834 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.15430 * 15.83559 * 14 9 7 16 16 C 1.56021 * 104.09172 * 246.69523 * 14 9 7 17 17 N 1.47870 * 105.10203 * 288.76743 * 16 14 9 18 18 C 1.34773 * 126.94117 * 181.98286 * 17 16 14 19 19 O 1.21284 * 120.00180 * 180.02562 * 18 17 16 20 20 C 1.50702 * 120.00131 * 0.02562 * 18 17 16 21 21 H 1.08996 * 110.72745 * 38.35899 * 20 18 17 22 22 C 1.54941 * 110.66630 * 275.26433 * 20 18 17 23 23 C 1.54601 * 102.91778 * 204.15166 * 22 20 18 24 24 C 1.53992 * 105.14273 * 21.95862 * 23 22 20 25 25 N 1.47907 * 107.05784 * 1.22335 * 24 23 22 26 26 C 1.38398 * 110.99947 * 214.15693 * 25 24 23 27 27 N 1.32501 * 119.21725 * 240.12638 * 26 25 24 28 28 C 1.32272 * 120.74110 * 180.26714 * 27 26 25 29 29 C 1.38605 * 119.19705 * 359.48581 * 28 27 26 30 30 C 1.38607 * 118.56029 * 0.25336 * 29 28 27 31 31 N 1.32280 * 119.19188 * 0.02562 * 30 29 28 32 32 H 0.96999 * 120.00450 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.31475 * 300.90780 * 10 9 7 34 34 H 1.09001 * 110.31614 * 63.09696 * 10 9 7 35 35 H 1.09005 * 112.53575 * 191.71148 * 13 11 10 36 36 H 1.08996 * 112.31690 * 64.17374 * 13 11 10 37 37 H 1.08996 * 110.31870 * 169.85292 * 16 14 9 38 38 H 1.09007 * 110.31500 * 47.66966 * 16 14 9 39 39 H 1.08990 * 110.72533 * 85.79639 * 22 20 18 40 40 H 1.09003 * 110.87842 * 322.57746 * 22 20 18 41 41 H 1.09004 * 110.31053 * 263.03814 * 23 22 20 42 42 H 1.09003 * 110.30351 * 140.87386 * 23 22 20 43 43 H 1.08998 * 109.91969 * 241.87318 * 24 23 22 44 44 H 1.09002 * 110.07910 * 120.66964 * 24 23 22 45 45 H 1.08002 * 120.40454 * 179.76837 * 28 27 26 46 46 H 1.08002 * 120.72513 * 180.27558 * 29 28 27 47 47 H 1.08001 * 120.40449 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1423 -2.5668 0.0005 11 6 -0.3649 -4.1048 0.0510 12 1 -1.3442 -4.4355 0.3971 13 6 0.8839 -4.5251 0.9126 14 6 1.9101 -3.7617 0.0016 15 1 2.9642 -3.8351 0.2694 16 6 1.5091 -4.3463 -1.3882 17 7 0.0523 -4.5840 -1.3004 18 6 -0.7397 -5.1198 -2.2501 19 8 -1.9268 -5.2578 -2.0430 20 6 -0.1504 -5.5475 -3.5696 21 1 0.8315 -5.9982 -3.4255 22 6 -0.0631 -4.3465 -4.5445 23 6 -0.0631 -5.0273 -5.9325 24 6 -0.6977 -6.4112 -5.7017 25 7 -1.0615 -6.4885 -4.2702 26 6 -0.9095 -7.7771 -3.7887 27 7 -1.9630 -8.4116 -3.2956 28 6 -1.8510 -9.6418 -2.8226 29 6 -0.6158 -10.2697 -2.8572 30 6 0.4640 -9.5790 -3.3846 31 7 0.2848 -8.3486 -3.8360 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5814 -2.0914 0.8776 34 1 -0.5739 -2.1535 -0.9110 35 1 1.0491 -5.6025 0.9110 36 1 0.8450 -4.1189 1.9233 37 1 2.0352 -5.2833 -1.5708 38 1 1.7284 -3.6281 -2.1784 39 1 0.8605 -3.7892 -4.3882 40 1 -0.9291 -3.6936 -4.4351 41 1 0.9571 -5.1355 -6.3008 42 1 -0.6612 -4.4495 -6.6372 43 1 0.0204 -7.1943 -5.9451 44 1 -1.5899 -6.5212 -6.3181 45 1 -2.7125 -10.1526 -2.4184 46 1 -0.4972 -11.2754 -2.4818 47 1 1.4399 -10.0398 -3.4266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032456708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:11 Heat of formation + Delta-G solvation = 89.120210 kcal Electronic energy + Delta-G solvation = -31241.283940 eV Core-core repulsion = 27233.217411 eV Total energy + Delta-G solvation = -4008.066530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.43493 -41.57443 -40.12856 -38.54912 -35.46743 -34.72047 -34.12389 -33.33385 -31.25951 -30.83663 -30.33244 -29.89149 -26.99177 -25.71918 -25.47915 -24.88547 -23.58336 -22.13018 -21.72999 -21.44468 -20.09042 -19.11376 -18.90327 -18.42141 -17.99094 -17.36767 -16.79746 -16.58118 -16.24040 -16.17555 -15.80647 -15.65806 -15.37122 -14.81142 -14.78071 -14.58512 -14.44042 -13.91492 -13.76983 -13.51996 -13.44148 -13.33528 -13.11811 -12.88458 -12.74242 -12.66127 -12.49870 -12.31057 -12.19268 -12.09413 -11.96016 -11.93264 -11.89456 -11.67228 -11.53715 -10.92431 -10.71466 -10.53249 -10.40530 -9.64620 -9.56042 -8.91556 -7.82973 -5.19490 -0.19751 0.16897 1.48045 1.50937 1.55582 1.57227 1.71968 2.34585 2.49573 2.66962 3.15267 3.28139 3.34741 3.43483 3.49532 3.68194 3.74879 3.76306 3.85877 3.91425 3.95244 4.02077 4.08491 4.17243 4.21240 4.31500 4.34202 4.50595 4.60587 4.63566 4.71255 4.79488 4.83050 4.86047 4.91449 4.96004 4.96914 5.10349 5.11258 5.19491 5.25853 5.42584 5.45235 5.56600 5.65131 5.73009 6.09424 6.21395 6.61972 7.02899 7.11901 7.18893 7.71393 8.42039 9.28023 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.003280 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.410305 B = 8534.516176 C = 9198.652048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.231 4.231 8 H 0.098 0.902 9 N -0.614 5.614 10 C 0.191 3.809 11 C 0.100 3.900 12 H 0.105 0.895 13 C -0.127 4.127 14 C 0.139 3.861 15 H 0.139 0.861 16 C 0.091 3.909 17 N -0.610 5.610 18 C 0.524 3.476 19 O -0.569 6.569 20 C 0.077 3.923 21 H 0.098 0.902 22 C -0.109 4.109 23 C -0.111 4.111 24 C 0.051 3.949 25 N -0.464 5.464 26 C 0.459 3.541 27 N -0.528 5.528 28 C 0.135 3.865 29 C -0.214 4.214 30 C 0.147 3.853 31 N -0.558 5.558 32 H 0.243 0.757 33 H 0.018 0.982 34 H -0.003 1.003 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.196 0.804 46 H 0.194 0.806 47 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -22.872 -8.656 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.231 1.231 6 H -0.200 1.200 7 C -0.360 4.360 8 H 0.115 0.885 9 N -0.338 5.338 10 C 0.065 3.935 11 C -0.004 4.004 12 H 0.123 0.877 13 C -0.166 4.166 14 C 0.033 3.967 15 H 0.156 0.844 16 C -0.033 4.033 17 N -0.344 5.344 18 C 0.313 3.687 19 O -0.448 6.448 20 C -0.033 4.033 21 H 0.116 0.884 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.075 4.075 25 N -0.190 5.190 26 C 0.104 3.896 27 N -0.243 5.243 28 C -0.030 4.030 29 C -0.235 4.235 30 C -0.020 4.020 31 N -0.277 5.277 32 H 0.052 0.948 33 H 0.036 0.964 34 H 0.015 0.985 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.212 0.788 46 H 0.211 0.789 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.629 -21.666 -8.912 23.880 hybrid contribution 0.277 0.518 0.384 0.702 sum 4.906 -21.147 -8.528 23.324 Atomic orbital electron populations 1.70164 1.06673 1.25208 1.58588 1.25669 0.96346 1.01211 1.03036 0.85155 0.76965 0.78817 0.78401 1.20083 1.23138 1.19953 1.19506 0.91288 0.82972 1.42223 0.88479 1.45466 1.01256 1.01028 1.86083 1.21364 0.85140 0.89812 0.97162 1.24110 0.99015 0.94628 0.82598 0.87698 1.24073 0.93861 1.00454 0.98214 1.23564 0.98204 0.83319 0.91658 0.84363 1.23246 0.79025 1.00169 1.00878 1.49294 1.10211 1.59963 1.14940 1.20449 0.85905 0.77343 0.85038 1.90667 1.16819 1.56795 1.80475 1.22608 0.94535 0.94664 0.91543 0.88439 1.22408 1.03066 0.95036 0.94220 1.22385 1.03043 0.93704 0.95743 1.22977 1.00690 0.99138 0.84716 1.61563 1.51388 1.00996 1.05043 1.21163 0.84749 0.91505 0.92209 1.68082 1.34330 1.10907 1.11006 1.23898 0.99662 0.88492 0.90970 1.23356 0.93816 1.04662 1.01648 1.23865 1.01433 0.88006 0.88691 1.68458 1.25232 1.14159 1.19809 0.94757 0.96416 0.98505 0.88538 0.89874 0.89173 0.92333 0.88732 0.92602 0.88034 0.88775 0.91426 0.89365 0.78767 0.78887 0.77641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.73 10.56 21.65 0.23 -58.50 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 45.10 29.55 68.60 2.03 47.13 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.23 -12.19 10.37 84.03 0.87 -11.31 16 8 H 0.10 4.67 7.83 -2.91 -0.02 4.65 16 9 N -0.61 -29.60 3.02 -649.72 -1.96 -31.56 16 10 C 0.19 9.81 4.75 86.97 0.41 10.22 16 11 C 0.10 4.12 5.23 46.86 0.25 4.37 16 12 H 0.11 4.44 8.05 -2.39 -0.02 4.42 16 13 C -0.13 -4.17 6.82 33.57 0.23 -3.94 16 14 C 0.14 4.86 5.52 46.91 0.26 5.12 16 15 H 0.14 3.98 8.14 -2.38 -0.02 3.96 16 16 C 0.09 3.00 5.80 87.16 0.51 3.50 16 17 N -0.61 -23.68 2.95 -768.54 -2.27 -25.95 16 18 C 0.52 21.44 7.00 87.66 0.61 22.05 16 19 O -0.57 -28.09 16.95 -3.04 -0.05 -28.14 16 20 C 0.08 2.50 2.10 44.52 0.09 2.59 16 21 H 0.10 2.89 6.86 -2.39 -0.02 2.87 16 22 C -0.11 -3.12 6.49 31.80 0.21 -2.91 16 23 C -0.11 -2.29 6.93 31.47 0.22 -2.07 16 24 C 0.05 1.22 6.58 86.44 0.57 1.79 16 25 N -0.46 -14.99 4.67 -676.86 -3.16 -18.15 16 26 C 0.46 14.00 6.19 261.49 1.62 15.62 16 27 N -0.53 -16.38 10.47 -197.99 -2.07 -18.45 16 28 C 0.14 2.70 11.30 84.71 0.96 3.65 16 29 C -0.21 -2.75 10.16 22.45 0.23 -2.52 16 30 C 0.15 2.28 11.30 84.71 0.96 3.23 16 31 N -0.56 -13.53 8.78 -197.99 -1.74 -15.27 16 32 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.02 1.02 7.46 -2.39 -0.02 1.00 16 34 H 0.00 -0.20 7.68 -2.39 -0.02 -0.22 16 35 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.09 2.30 7.96 -2.39 -0.02 2.29 16 38 H 0.06 2.11 8.06 -2.38 -0.02 2.09 16 39 H 0.09 2.52 8.06 -2.39 -0.02 2.50 16 40 H 0.06 1.91 8.05 -2.39 -0.02 1.89 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.49 7.20 -2.39 -0.02 1.47 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 46 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 47 H 0.21 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -83.92 378.87 0.43 -83.49 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.97 Total: 19.46 kcal Atomic # 6 Polarization: 37.50 SS G_CDS: 8.45 Total: 45.95 kcal Atomic # 7 Polarization: -156.91 SS G_CDS: -10.97 Total: -167.89 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -83.92 0.43 -83.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032456708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.611 kcal (2) G-P(sol) polarization free energy of solvation -83.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds