Wall clock time and date at job start Wed Apr 1 2020 02:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30199 * 126.20798 * 2 1 4 4 N 1.39801 * 110.12990 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.33477 * 179.97438 * 4 3 2 6 6 C 1.36630 * 109.32198 * 359.97438 * 4 3 2 7 7 N 1.32923 * 133.26908 * 180.02562 * 6 4 3 8 8 C 1.31196 * 121.84313 * 179.97438 * 7 6 4 9 9 C 1.40176 * 121.37569 * 359.97438 * 8 7 6 10 10 C 1.47690 * 120.40872 * 179.97438 * 9 8 7 11 11 O 1.21570 * 120.00011 * 321.26113 * 10 9 8 12 12 N 1.34781 * 119.99680 * 141.26492 * 10 9 8 13 13 C 1.46494 * 120.00054 * 4.89238 * 12 10 9 14 14 C 1.46497 * 119.99826 * 184.89431 * 12 10 9 15 15 H 1.09009 * 110.77658 * 8.75051 * 14 12 10 16 16 C 1.55157 * 110.72193 * 245.51350 * 14 12 10 17 17 C 1.54913 * 101.57790 * 277.13904 * 16 14 12 18 18 N 1.47434 * 104.83059 * 322.98746 * 17 16 14 19 19 C 1.36934 * 125.64680 * 204.17414 * 18 17 16 20 20 H 1.07998 * 119.99936 * 179.97438 * 19 18 17 21 21 C 1.38816 * 120.00106 * 359.94870 * 19 18 17 22 22 N 1.31612 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47093 * 60.00075 * 23 21 19 25 25 H 1.48490 * 109.47171 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47302 * 300.00479 * 23 21 19 27 27 C 1.47021 * 108.70134 * 24.13234 * 18 17 16 28 28 C 1.39502 * 119.18141 * 0.25745 * 9 8 7 29 29 C 1.39665 * 117.94872 * 359.50626 * 28 9 8 30 30 H 1.08998 * 109.46998 * 90.02392 * 1 2 3 31 31 H 1.09002 * 109.46844 * 210.02140 * 1 2 3 32 32 H 1.08996 * 109.47063 * 330.02136 * 1 2 3 33 33 H 1.09000 * 109.46987 * 270.03670 * 5 4 3 34 34 H 1.08996 * 109.47733 * 30.04012 * 5 4 3 35 35 H 1.08999 * 109.46962 * 150.03828 * 5 4 3 36 36 H 1.08003 * 119.30593 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.47064 * 205.50329 * 13 12 10 38 38 H 1.09002 * 109.47098 * 325.49948 * 13 12 10 39 39 H 1.08997 * 109.47403 * 85.49955 * 13 12 10 40 40 H 1.08994 * 111.00266 * 35.20753 * 16 14 12 41 41 H 1.09000 * 111.00619 * 159.06649 * 16 14 12 42 42 H 1.08994 * 110.36890 * 81.82344 * 17 16 14 43 43 H 1.09000 * 110.36506 * 204.15091 * 17 16 14 44 44 H 0.97003 * 119.99801 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.87708 * 239.52009 * 27 18 17 46 46 H 1.09000 * 109.88344 * 118.35557 * 27 18 17 47 47 H 1.08002 * 121.02683 * 179.74513 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0505 0.0000 4 7 3.6195 0.6634 -0.0006 5 6 4.7646 1.5771 -0.0013 6 6 3.6968 -0.7007 -0.0004 7 7 4.7147 -1.5556 -0.0003 8 6 4.5280 -2.8542 0.0004 9 6 3.2395 -3.4063 0.0016 10 6 3.0540 -4.8715 0.0018 11 8 3.7917 -5.5777 -0.6577 12 7 2.0667 -5.4256 0.7331 13 6 1.1118 -4.5703 1.4420 14 6 1.9487 -6.8833 0.8191 15 1 2.8150 -7.3686 0.3694 16 6 0.6372 -7.3685 0.1469 17 6 -0.3933 -7.1513 1.2830 18 7 0.3302 -7.4977 2.5200 19 6 -0.2454 -7.9075 3.6930 20 1 0.3744 -8.1392 4.5465 21 6 -1.6256 -8.0247 3.7851 22 7 -2.3808 -7.7424 2.7449 23 14 -2.4107 -8.5845 5.3850 24 1 -2.0583 -7.6325 6.4689 25 1 -3.8861 -8.6276 5.2238 26 1 -1.9115 -9.9388 5.7341 27 6 1.7719 -7.3312 2.2853 28 6 2.1346 -2.5546 -0.0034 29 6 2.3693 -1.1779 0.0012 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 5.0477 1.8040 -1.0291 34 1 4.4941 2.4992 0.5131 35 1 5.6041 1.1078 0.5116 36 1 5.3849 -3.5115 0.0008 37 1 0.7030 -5.1116 2.2953 38 1 1.6192 -3.6711 1.7914 39 1 0.3026 -4.2918 0.7668 40 1 0.3947 -6.7576 -0.7226 41 1 0.7037 -8.4222 -0.1241 42 1 -0.7141 -6.1100 1.3101 43 1 -1.2511 -7.8101 1.1481 44 1 -3.3452 -7.8246 2.8091 45 1 2.2858 -8.2786 2.4481 46 1 2.1713 -6.5704 2.9560 47 1 1.1287 -2.9478 -0.0067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033315607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:01 Heat of formation + Delta-G solvation = 117.153397 kcal Electronic energy + Delta-G solvation = -30235.087503 eV Core-core repulsion = 26228.236583 eV Total energy + Delta-G solvation = -4006.850919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -41.90503 -40.11153 -38.23994 -37.23423 -34.95003 -34.37190 -32.62904 -31.58305 -30.55511 -29.82022 -29.25895 -27.88631 -26.70659 -25.96725 -24.48755 -24.10557 -23.31468 -21.17401 -20.16861 -20.06167 -18.93827 -17.97279 -17.30597 -16.93370 -16.83543 -16.31468 -16.10999 -15.58625 -15.05599 -14.75022 -14.33172 -13.94201 -13.90571 -13.82738 -13.73020 -13.55077 -13.29161 -13.06114 -12.79051 -12.70745 -12.54838 -12.35091 -12.06514 -11.90862 -11.77918 -11.54295 -11.29458 -11.11061 -10.93320 -10.87430 -10.54813 -10.41281 -10.19291 -9.99876 -9.90914 -9.61288 -9.45067 -9.25337 -8.73207 -8.48803 -8.29833 -6.91348 -5.71717 -3.14083 0.49820 0.71793 1.83344 2.09597 2.77668 3.13747 3.36517 3.41657 3.42154 3.57075 3.79445 3.94189 4.18460 4.43358 4.44957 4.59918 4.78643 4.86190 4.91591 5.04446 5.16551 5.25268 5.27810 5.33973 5.38706 5.41249 5.45828 5.48221 5.54378 5.65962 5.73210 5.76668 5.85328 5.94655 6.13636 6.19360 6.27987 6.32783 6.49878 6.51089 6.55770 6.67165 6.95988 7.15720 7.41538 7.56144 7.56939 7.65167 7.79246 8.27310 8.29783 9.15330 9.75686 10.39647 11.31522 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.002836 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.239948 B = 9870.346818 C =10930.924245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.120 3.880 3 N -0.245 5.245 4 N -0.395 5.395 5 C 0.113 3.887 6 C 0.328 3.672 7 N -0.508 5.508 8 C 0.223 3.777 9 C -0.221 4.221 10 C 0.567 3.433 11 O -0.542 6.542 12 N -0.585 5.585 13 C 0.064 3.936 14 C 0.127 3.873 15 H 0.101 0.899 16 C -0.155 4.155 17 C 0.148 3.852 18 N -0.602 5.602 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.126 3.874 28 C 0.041 3.959 29 C -0.233 4.233 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.175 0.825 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.018 0.982 43 H 0.106 0.894 44 H 0.253 0.747 45 H 0.035 0.965 46 H 0.028 0.972 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.757 16.169 -6.739 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 N -0.059 5.059 4 N -0.185 5.185 5 C -0.028 4.028 6 C 0.089 3.911 7 N -0.223 5.223 8 C 0.053 3.947 9 C -0.229 4.229 10 C 0.355 3.645 11 O -0.421 6.421 12 N -0.316 5.316 13 C -0.078 4.078 14 C 0.024 3.976 15 H 0.119 0.881 16 C -0.195 4.195 17 C 0.023 3.977 18 N -0.329 5.329 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.000 4.000 28 C 0.012 3.988 29 C -0.243 4.243 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.192 0.808 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.036 0.964 43 H 0.124 0.876 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.046 0.954 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.933 17.594 -6.970 21.372 hybrid contribution -1.119 -1.240 0.874 1.885 sum 8.814 16.354 -6.097 19.552 Atomic orbital electron populations 1.20356 0.84873 1.04574 1.03988 1.23588 0.96938 0.88098 0.97201 1.76680 0.86278 1.22826 1.20075 1.48011 1.04583 1.01591 1.64277 1.21814 0.84681 0.93078 1.03256 1.19149 0.90456 0.86303 0.95170 1.66767 1.32625 1.02937 1.19929 1.22777 0.95855 0.88779 0.87241 1.20654 0.95072 0.94628 1.12523 1.17890 0.80654 0.86467 0.79517 1.90766 1.46146 1.62854 1.42326 1.47712 1.28721 1.07310 1.47878 1.22338 0.91815 0.94931 0.98731 1.22186 0.99718 0.78205 0.97529 0.88141 1.23383 0.96269 1.00553 0.99260 1.22059 0.94438 0.99309 0.81886 1.44547 0.99124 1.78757 1.10474 1.19014 0.90000 1.37585 0.88665 0.90559 1.24764 0.95988 1.01798 0.97840 1.69782 1.04082 1.54873 1.28204 0.86169 0.78257 0.78583 0.82562 1.21233 1.21594 1.21180 1.21623 0.88198 0.97825 0.92367 1.21636 1.00034 0.89977 0.87109 1.20309 0.93696 0.94568 1.15695 0.89435 0.89314 0.89836 0.91108 0.89402 0.89109 0.80790 0.87694 0.91974 0.92408 0.92059 0.91012 0.96406 0.87645 0.93656 0.94717 0.95378 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.48 36.01 0.38 -0.19 16 2 C 0.12 1.32 7.44 -80.19 -0.60 0.72 16 3 N -0.24 -2.93 12.39 34.84 0.43 -2.50 16 4 N -0.40 -4.68 4.03 -67.18 -0.27 -4.95 16 5 C 0.11 0.88 11.43 59.85 0.68 1.56 16 6 C 0.33 4.32 7.96 -156.10 -1.24 3.08 16 7 N -0.51 -6.70 10.37 -12.03 -0.12 -6.82 16 8 C 0.22 2.84 10.77 -17.10 -0.18 2.66 16 9 C -0.22 -2.94 5.25 -104.84 -0.55 -3.49 16 10 C 0.57 8.85 7.36 -12.40 -0.09 8.76 16 11 O -0.54 -9.89 16.33 5.30 0.09 -9.80 16 12 N -0.59 -9.24 2.84 -173.01 -0.49 -9.73 16 13 C 0.06 0.93 6.89 59.84 0.41 1.34 16 14 C 0.13 2.23 3.53 -66.10 -0.23 1.99 16 15 H 0.10 1.77 7.08 -51.92 -0.37 1.40 16 16 C -0.16 -2.85 6.67 -24.58 -0.16 -3.01 16 17 C 0.15 3.27 5.05 -2.52 -0.01 3.26 16 18 N -0.60 -14.22 2.84 -170.07 -0.48 -14.70 16 19 C -0.22 -5.89 10.27 -15.06 -0.15 -6.04 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -25.29 10.09 55.49 0.56 -24.73 16 23 Si 0.91 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.13 2.51 6.08 -3.07 -0.02 2.49 16 28 C 0.04 0.48 7.72 -38.58 -0.30 0.18 16 29 C -0.23 -2.87 6.33 -105.20 -0.67 -3.53 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.18 1.93 8.05 -52.48 -0.42 1.51 16 37 H 0.10 1.87 5.22 -51.93 -0.27 1.60 16 38 H 0.06 0.78 5.81 -51.93 -0.30 0.48 16 39 H 0.06 0.75 6.60 -51.93 -0.34 0.41 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.02 0.40 5.99 -51.93 -0.31 0.09 16 43 H 0.11 2.71 5.87 -51.93 -0.30 2.41 16 44 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.56 7.56 -51.93 -0.39 0.17 16 47 H 0.16 1.58 5.37 -52.49 -0.28 1.30 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -31.98 375.47 -8.84 -40.82 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.35 Total: 1.13 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -2.83 Total: 9.47 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.38 Total: -63.44 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.98 -8.84 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033315607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.977 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds